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1.
Dig Dis Sci ; 65(1): 132-140, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31312993

RESUMEN

BACKGROUND: Colchicine binds to intracellular tubulin and prevents mitosis. Colchicine is also used as an anti-inflammatory drug. Meanwhile, excess administration of medication or accidental ingestion of colchicine-containing plants can cause acute colchicine poisoning, which initially results in gastrointestinal effects that may be followed by multiorgan dysfunction. However, the mechanism of colchicine poisoning remains unclear, and there are no standard therapeutic strategies. AIMS: We focused on intestinal barrier function and attempted to reveal the underlying mechanism of colchicine poisoning using an animal model. METHODS: Colchicine was orally administered to C57Bl/6 mice. Then, we performed histopathological analysis, serum endotoxin assays, and intestinal permeability testing. Additionally, the LPS-TLR4 signaling inhibitor TAK-242 was intraperitoneally injected after colchicine administration to analyze the therapeutic effect. RESULTS: We observed villus height reduction and increased numbers of apoptotic cells in the gastrointestinal epithelium of colchicine-treated mice. Both intestinal permeability and serum endotoxin levels were higher in colchicine-treated mice than in control mice. Although colchicine-poisoned mice died within 25 h, those that also received TAK-242 treatment survived for more than 48 h. CONCLUSION: Colchicine disrupted intestinal barrier function and caused endotoxin shock. Therapeutic inhibition of LPS-TLR4 signaling might be beneficial for treating acute colchicine poisoning.


Asunto(s)
Apoptosis/efectos de los fármacos , Traslocación Bacteriana/efectos de los fármacos , Colchicina/envenenamiento , Endotoxinas/sangre , Mucosa Intestinal/efectos de los fármacos , Intestino Delgado/efectos de los fármacos , Choque Séptico/inducido químicamente , Animales , Inyecciones Intraperitoneales , Mucosa Intestinal/metabolismo , Mucosa Intestinal/microbiología , Mucosa Intestinal/ultraestructura , Intestino Delgado/metabolismo , Intestino Delgado/microbiología , Intestino Delgado/ultraestructura , Masculino , Ratones Endogámicos C57BL , Permeabilidad , Choque Séptico/microbiología , Choque Séptico/patología , Choque Séptico/prevención & control , Transducción de Señal , Sulfonamidas/administración & dosificación , Factores de Tiempo , Receptor Toll-Like 4/antagonistas & inhibidores , Receptor Toll-Like 4/metabolismo
2.
Cancer Sci ; 110(9): 2748-2759, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31301081

RESUMEN

In hepatocarcinogenesis induced by diethylnitrosamine (DEN) in B6C3F1 mice, the BrafV637E mutation, corresponding to the human BRAFV600E mutation, plays a pivotal role. The livers of transgenic mice with a hepatocyte-specific human BRAFV600E mutation weighed 4.5 times more than that of normal mice and consisted entirely of hepatocytes, resembling DEN-induced preneoplastic hepatocytes. However, these transgenic mice spontaneously died 7 wk after birth, therefore this study aimed to clarify the causes of death. In the transgenic mice, the liver showed thrombopoietin (TPO) overexpression, which is associated with eventual megakaryocytosis and thrombocytosis, and activated platelets were deposited in hepatic sinusoids. TPO was also overexpressed in the DEN-induced hepatic tumors, and sinusoidal platelet deposition was observed in the hepatic tumors of humans and mice. Podoplanin was expressed in some of the Kupffer cells in the liver of the transgenic mice, indicating that platelet activation occurred via the interaction of podoplanin with C-type lectin receptor 2 (CLEC-2) on the platelet membrane. Additionally, erythrocyte dyscrasia and glomerulonephropathy/interstitial pneumonia associated with platelet deposition were observed. In the transgenic mice, aspirin (Asp) administration prevented platelet activation, reduced the liver/body weight ratio, decreased the platelet deposition in the liver, kidney, and lung, and prevented erythrocyte dyscrasia and ameliorated the renal/pulmonary changes. Thrombopoietin overproduction by BRAFV600E-mutated hepatocytes may contribute to hepatocyte proliferation via thrombocytosis, platelet activation, and the interaction of platelets with hepatic sinusoidal cells, while hematologic, renal, and pulmonary disorders due to aberrant platelet activation may lead to spontaneous death in the transgenic mice.


Asunto(s)
Carcinogénesis/genética , Neoplasias Hepáticas Experimentales/patología , Hígado/patología , Proteínas Proto-Oncogénicas B-raf/genética , Trombopoyetina/metabolismo , Animales , Biopsia , Plaquetas/patología , Médula Ósea/patología , Capilares/patología , Carcinógenos/administración & dosificación , Carcinógenos/toxicidad , Proliferación Celular/genética , Dietilnitrosamina/administración & dosificación , Dietilnitrosamina/toxicidad , Femenino , Regulación Neoplásica de la Expresión Génica , Hepatectomía , Hepatocitos/patología , Humanos , Hígado/irrigación sanguínea , Hígado/citología , Neoplasias Hepáticas Experimentales/inducido químicamente , Neoplasias Hepáticas Experimentales/genética , Masculino , Ratones , Ratones Endogámicos C57BL , Ratones Endogámicos , Ratones Transgénicos , Activación Plaquetaria/genética , Cultivo Primario de Células , Proteínas Proto-Oncogénicas B-raf/metabolismo , Células Tumorales Cultivadas
3.
Biochem Biophys Res Commun ; 503(2): 809-814, 2018 09 05.
Artículo en Inglés | MEDLINE | ID: mdl-29913144

RESUMEN

Paraquat (PQ) is a widely used herbicide in the world despite being highly toxic to humans. PQ causes fatal damage to multiple organs, especially the lungs. While oxidative stress is the main toxic mechanism of PQ, there is no established standard therapy for PQ poisoning. In this study, we investigated the cytoprotective effect of 4-phenylbutyrate (4PBA) on PQ toxicity in human lung adenocarcinoma A549 cells. Phosphorylation levels of major survival signaling kinases Akt and ERK, as well as expression levels of antioxidant enzymes catalase and superoxide dismutase 2 (SOD2) were examined. The cytoprotective mechanism of 4PBA against PQ was compared with the antioxidant reagent trolox. We demonstrated that both 4PBA and trolox attenuated PQ toxicity, but their mechanisms were different. 4PBA increased ERK2 phosphorylation levels, which could be inhibited by the PI3K inhibitor LY294002. The cytoprotective effect of 4PBA was also inhibited by LY294002. Catalase expression levels were increased by 4PBA, although this increase was not inhibited by LY294002. 4PBA did not increase SOD2 expression. Trolox did not affect phosphorylation of Akt or ERK, or the expression of antioxidant enzymes. These results suggest that 4PBA attenuated PQ cytotoxicity by ERK2 activation via PI3K. Our study may provide new findings for understanding the molecular mechanism underlying cytoprotection by 4PBA, as well as new therapeutic targets for PQ poisoning.


Asunto(s)
Proteína Quinasa 1 Activada por Mitógenos/metabolismo , Paraquat/farmacología , Fenilbutiratos/farmacología , Fosfatidilinositol 3-Quinasas/metabolismo , Células A549 , Adenocarcinoma/metabolismo , Adenocarcinoma/patología , Supervivencia Celular/efectos de los fármacos , Citoprotección/efectos de los fármacos , Herbicidas/farmacología , Humanos , Neoplasias Pulmonares/metabolismo , Neoplasias Pulmonares/patología , Fosforilación/efectos de los fármacos
4.
Anal Biochem ; 494: 16-22, 2016 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-26505528

RESUMEN

The aim of this study was to develop a cost-effective genotyping method using high-quality DNA for human identification. A total of 21 short tandem repeats (STRs) and amelogenin were selected, and fluorescent fragments at 22 loci were simultaneously amplified in a single-tube reaction using locus-specific primers with 24-base universal tails and four fluorescent universal primers. Several nucleotide substitutions in universal tails and fluorescent universal primers enabled the detection of specific fluorescent fragments from the 22 loci. Multiplex polymerase chain reaction (PCR) produced intense FAM-, VIC-, NED-, and PET-labeled fragments ranging from 90 to 400 bp, and these fragments were discriminated using standard capillary electrophoretic analysis. The selected 22 loci were also analyzed using two commercial kits (the AmpFLSTR Identifiler Kit and the PowerPlex ESX 17 System), and results for two loci (D19S433 and D16S539) were discordant between these kits due to mutations at the primer binding sites. All genotypes from the 100 samples were determined using 2.5 ng of DNA by our method, and the expected alleles were completely recovered. Multiplex 22-locus genotyping using four fluorescent universal primers effectively reduces the costs to less than 20% of genotyping using commercial kits, and our method would be useful to detect silent alleles from commercial kit analysis.


Asunto(s)
Amelogenina/genética , Cartilla de ADN/metabolismo , Repeticiones de Microsatélite/genética , Reacción en Cadena de la Polimerasa Multiplex , Alelos , Amelogenina/análisis , Cartilla de ADN/química , Femenino , Colorantes Fluorescentes/química , Sitios Genéticos , Genotipo , Técnicas de Genotipaje , Humanos , Masculino , Mucosa Bucal/metabolismo
5.
Mol Cell Probes ; 28(1): 13-8, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24075877

RESUMEN

Short insertion/deletion (Indel) polymorphisms of approximately 2-6 bp are useful as biallelic markers for forensic analysis, and the application of Indel genotyping as a supplementary tool would improve human identification accuracy. We examined the allele frequencies of 37 autosomal Indels in the Japanese population and developed a novel dual-color genotyping method for human identification on the basis of universal fluorescent PCR, including the sex-typing amelogenin locus. Target genomic fragment sizes for 38 Indels were 49-143 bp. We analyzed these Indels in 100 Japanese individuals using the M13(-47) sequence as a universal primer. For dual-color genotyping, we designed a novel universal primer with high amplification efficiency and specificity. Using FAM-labeled M13(-47) and HEX-labeled modified M13(-47) primers, fluorescent signals at all loci were clearly distinguished in two independent multiplex PCRs. Average minor allele frequency was 0.39, and accumulated matching probability was 2.12 × 10(-15). Complete profiles were successfully amplified with as little as 0.25 ng of DNA. This method provides robust, sensitive, and cost-effective genotyping for human identification.


Asunto(s)
Antropología Forense/métodos , Genoma Humano , Técnicas de Genotipaje , Mutación INDEL , Reacción en Cadena de la Polimerasa Multiplex , Polimorfismo Genético , Amelogenina/genética , Cartilla de ADN , Colorantes Fluorescentes , Frecuencia de los Genes , Variación Genética , Genotipo , Técnicas de Genotipaje/economía , Humanos , Japón , Sensibilidad y Especificidad
6.
Leg Med (Tokyo) ; 67: 102336, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-37923589

RESUMEN

DNA methylation modifications are known to influence epigenetic phenomena and have been a focus of forensic science research for some time. Degraded DNA after bisulfite treatment is widely used in DNA methylation analysis. In this study, we analyzed methylation levels at 12 CpG sites of four selected genomic regions by pyrosequencing after bisulfite treatment. DNA was extracted from buccal swab samples collected from 102 Japanese individuals who were 21-77 years old. We also developed a simple method to quantify the degradation levels of bisulfite-converted DNA by real-time PCR, and evaluated the effect of DNA degradation on age estimation. We found that the methylation levels and chronological ages were highly correlated in the four selected regions, and the mean absolute deviation (MAD) between chronological and estimated ages was low at 3.88 years. These results indicated that pyrosequencing analysis at the 12 CpGs was useful for age estimation in the Japanese population. To develop a sensitive quantification method, we analyzed the amplification efficiency of short and long fragments from 10 regions by real-time PCR. The amplification efficiency was highest for CCDC102B, and the degradation levels of bisulfite-converted DNA for the 102 samples were categorized as moderately or heavily degraded. For the younger age groups (20-49 years), the MADs were lower for moderately degraded DNA than they were for heavily degraded DNA. This finding indicates that degradation levels affected the accuracy of age estimation in most of the samples; the exception was the samples from the 50-77 years age group.


Asunto(s)
Envejecimiento , Metilación de ADN , Sulfitos , Humanos , Adulto Joven , Adulto , Persona de Mediana Edad , Anciano , Metilación de ADN/genética , Envejecimiento/genética , Islas de CpG/genética , ADN/genética , Genética Forense/métodos
7.
Biochem Biophys Res Commun ; 432(4): 689-94, 2013 Mar 22.
Artículo en Inglés | MEDLINE | ID: mdl-23416354

RESUMEN

Paraquat is a commonly used herbicide; however, it is highly toxic to humans and animals. Exposure to paraquat causes severe lung damage, leading to pulmonary fibrosis. However, it has not been well clarified as how paraquat causes cellular damage, and there is no established standard therapy for paraquat poisoning. Meanwhile, endoplasmic reticulum stress (ERS) is reported to be one of the causative factors in many diseases, although mammalian cells have a defense mechanism against ERS-induced apoptosis (unfolded protein response). Here, we demonstrated that paraquat changed the expression levels of unfolded protein response-related molecules, resulting in ERS-related cell death in human lung epithelial A549 cells. Moreover, treatment with sodium tauroursodeoxycholate (TUDCA), a chemical chaperone, crucially rescued cells from death caused by exposure to paraquat. These results indicate that paraquat toxicity may be associated with ERS-related molecules/events. Through chemical chaperone activity, treatment with TUDCA reduced paraquat-induced ERS and mildly suppressed cell death. Our findings also suggest that TUDCA treatment represses the onset of pulmonary fibrosis caused by paraquat, and therefore chemical chaperones may have novel therapeutic potential for the treatment of paraquat poisoning.


Asunto(s)
Apoptosis/efectos de los fármacos , Estrés del Retículo Endoplásmico/efectos de los fármacos , Herbicidas/antagonistas & inhibidores , Pulmón/citología , Paraquat/antagonistas & inhibidores , Mucosa Respiratoria/efectos de los fármacos , Ácido Tauroquenodesoxicólico/farmacología , Caspasa 3/biosíntesis , Línea Celular , Proteínas de Unión al ADN/metabolismo , Activación Enzimática/efectos de los fármacos , Factor 2 Eucariótico de Iniciación/metabolismo , Herbicidas/toxicidad , Humanos , ATPasas de Translocación de Protón Mitocondriales/metabolismo , Paraquat/toxicidad , Factores de Transcripción del Factor Regulador X , Mucosa Respiratoria/citología , Mucosa Respiratoria/enzimología , Factores de Transcripción/metabolismo , Respuesta de Proteína Desplegada/efectos de los fármacos
8.
Electrophoresis ; 34(3): 448-55, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23161600

RESUMEN

Amplification/hybridization-based genetic analyses using primers containing locked nucleic acids (LNAs) present many benefits. Here, we developed a novel design for universal fluorescent PCR using LNAs. Universal fluorescent PCR generates intermediate nonlabeled fragments and final fluorescent fragments in a two-step amplification process that uses locus-specific primers with universal tails and universal fluorescent primers. In this study, a few standard nucleotides were replaced with LNAs only in the fluorescent universal primers. The sequence of the fluorescent universal primer significantly affected the amplification efficiency. For primers with three LNAs, the fluorescent primers with stable M13(-47) sequences provided the most efficient signal (approximately tenfold higher than the primers with M13(-21) sequences at lower Tm values). Moreover, AT-rich LNA substitutions in the fluorescent primers produced much lower amplification efficiencies than GC-rich substitutions. GC-rich LNAs produced greater differences in Tm values among primers, and resulted in the preferential production of fluorescently labeled amplicons. The specificity and sensitivity of LNA-containing fluorescent primers were assessed by genotyping eight STRs in Japanese individuals, and full STR profiles could be generated using as little as 0.25 ng of genomic DNA. The method permitted clear discrimination of alleles and represents sensitive STR genotyping at a reduced cost.


Asunto(s)
Cartilla de ADN/química , Colorantes Fluorescentes/química , Técnicas de Genotipaje/métodos , Reacción en Cadena de la Polimerasa Multiplex/métodos , Oligonucleótidos/química , Composición de Base , Línea Celular , Simulación por Computador , ADN/análisis , ADN/genética , Cartilla de ADN/genética , Femenino , Frecuencia de los Genes , Humanos , Repeticiones de Microsatélite , Plásmidos/genética
9.
Genomics ; 99(4): 227-32, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22293435

RESUMEN

Discrimination of Alu insertions is a useful tool for geographic ancestry analysis, and is usually performed by Alu element amplification and agarose gel electrophoresis. Here, we have developed a new fluorescence-based method for multiple Alu genotyping in forensic identification. Allele frequencies were determined in 70 Japanese individuals, and we selected 30 polymorphic Alu insertions. Three primers were designed for each Alu locus to discriminate alleles using the 3-6 bp differences in amplicon sizes. Furthermore, we classified the amplification primers for the 30 loci into three different sets, and PCR using each set of primers provided 10 loci fragments ranging from 50 to 137 bp. Based on population data, the probability of incorrectly assigning a match was 3.7×10(-13). Three independent amplifications and subsequent capillary electrophoresis enabled the sensitive genotyping of small amounts of DNA, indicating that this method is suitable for identifying individuals of Japanese ethnicity.


Asunto(s)
Elementos Alu/genética , Pueblo Asiatico/genética , Reacción en Cadena de la Polimerasa Multiplex/métodos , Mutagénesis Insercional/métodos , Polimorfismo Genético , Alelos , Cartilla de ADN/genética , Electroforesis Capilar/métodos , Frecuencia de los Genes , Sitios Genéticos , Marcadores Genéticos , Genotipo , Humanos , Japón , Análisis de Secuencia de ADN
10.
J Forensic Sci ; 68(1): 267-274, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-36151731

RESUMEN

Age prediction based on methylation analysis has been reported in many populations, with 10 ng or more of DNA usually required for each determination. In this study, we designed thermostable locked nucleic acid (LNA) primers by replacing a small number of DNA bases in standard DNA primers with LNAs. We evaluated these primer sets by single-base extension analysis using 10, 5, or 2 ng of DNA that would be less than template DNA used in standard methylation testing, and determined sensitivity and accuracy. We analyzed EDARADD, SST, and KLF14 genes, targeting one CpG site in each gene. Melting temperature values of most LNA primers were 4°C higher than those of DNA primers. The intensities of signals from the EDARADD and SST genes were significantly improved by the LNA primers, by 3.3 times and 1.4 times, respectively, compared with the DNA primers using 2 ng of DNA. Coefficient of variation (CV) analysis was used to assess the accuracy of the determined methylation levels. CVs were increased using small amounts of DNA, but lower CVs were detected using LNA primers. We also showed high accuracy of age prediction for 51 individuals using LNA primers. The lowest mean absolute deviation was obtained using 10 ng of DNA and was 3.88 years with the LNA primers. Thermostable PCR primers were simply designed, and the LNAs improved the sensitivity and accuracy of methylation analysis for 10 ng or less of DNA.


Asunto(s)
ADN , Oligonucleótidos , Humanos , Cartilla de ADN/genética , Cartilla de ADN/metabolismo , Metilación , Oligonucleótidos/metabolismo
11.
Leg Med (Tokyo) ; 58: 102092, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35643042

RESUMEN

The appearance of Meadow saffron (Colchicum autumnale), which contains colchicine, closely resembles Alpine leek (Allium victorialis), a popular edible wild vegetable in Northern Japan. This often results in the accidental ingestion of Meadow saffron and acute colchicine poisoning deaths. Here, we report on a case of acute colchicine poisoning death caused by the accidental ingestion of Meadow saffron. A man in his 70 s had been given wild vegetables from his neighborhood, which were then cooked and eaten by himself and his wife. Several hours later, they suffered from abdominal pain, vomiting, and diarrhea. They immediately went to the hospital and received routine treatment. While his wife made a full recovery, he died at home two days after consumption of the vegetables. A forensic autopsy was conducted five days after ingestion of the Meadow saffron and a lethal concentration (21.5 ng/mL) of colchicine in the peripheral blood sample was detected by liquid chromatography-tandem mass spectrometry. Distribution of colchicine in body fluids, tissues and gastrointestinal contents was also investigated. Some of the plants he had eaten were identified as Alpine leek or Meadow saffron by genetic analysis of his stomach contents. Histopathological examination showed apoptotic cells and cell cycle arrest at the metaphase in the intestinal crypts and testis. In addition, we detected high concentrations of endotoxins and tumor necrosis factor-α in his blood, indicating that intestinal mucosal injury induced by colchicine poisoning had allowed endotoxins to invade the body, causing death by endotoxin shock.


Asunto(s)
Colchicum , Causas de Muerte , Colchicina , Endotoxinas/efectos adversos , Humanos , Masculino , Vómitos/inducido químicamente
12.
Mol Cell Probes ; 24(6): 381-6, 2010 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-20797430

RESUMEN

The ligase detection reaction (LDR) is a highly specific genotyping method for single nucleotide variations. Although LDR typically discriminates single nucleotide polymorphism (SNP) alleles at the 3' end of so-called LDR discriminating probes, we designed probes in which the position of nucleotide differences for discrimination was shifted to the second and third nucleotides from the 3' end. Using the 3'-modified probes, we targeted SNPs of the human ABO group and investigated the specificity and efficiency of ligation by a universal LDR assay. We demonstrated that one or two nucleotide shifts of differences in discriminating probes improve the allele balance in detecting both base substitutions and short deletions. In regard to short deletions, moreover, the shifts of nucleotide differences in discriminating probes form the perfect-machted or multiple-mismatched structures (the bulge structures) in the discriminating probe-target DNA duplex and may contribute to enhance ligation efficiency.


Asunto(s)
Sondas de ADN/metabolismo , Reacción en Cadena de la Ligasa/métodos , Nucleótidos/genética , Polimorfismo de Nucleótido Simple/genética , Secuencia de Bases , Bioensayo , Humanos , Datos de Secuencia Molecular , Eliminación de Secuencia
13.
Anal Biochem ; 386(1): 85-90, 2009 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-19070585

RESUMEN

Single nucleotide polymorphism (SNP) is informative for human identification, and much shorter regions are targeted in analysis of biallelic SNP compared with highly polymorphic short tandem repeat (STR). Therefore, SNP genotyping is expected to be more sensitive than STR genotyping of degraded human DNA. To achieve simple, economical, and sensitive SNP genotyping for identification of degraded human DNA, we developed 18 loci for a SNP genotyping technique based on the mini-primer allele-specific amplification (ASA) combined with universal reporter primers (URP). The URP/ASA-based genotyping consisted of two amplifications followed by detection using capillary electrophoresis. The sizes of the target genome fragments ranged from 40 to 67bp in length. In the Japanese population, the frequencies of minor alleles of 18 SNPs ranged from 0.36 to 0.50, and these SNPs are informative for identification. The success rate of SNP genotyping was much higher than that of STR genotyping of artificially degraded DNA. Moreover, we applied this genotyping method to case samples and showed successful SNP genotyping of severely degraded DNA from a 4-year buffered formalin-fixed tissue sample for human identification.


Asunto(s)
Cartilla de ADN , ADN/genética , Técnicas de Amplificación de Ácido Nucleico/métodos , Polimorfismo de Nucleótido Simple/genética , Pueblo Asiatico , Electroforesis Capilar , Genotipo , Humanos , Métodos , Proyectos de Investigación
14.
Forensic Sci Int Genet ; 41: 58-63, 2019 07.
Artículo en Inglés | MEDLINE | ID: mdl-30974414

RESUMEN

Locked nucleic acid (LNA) has been widely used for various genetic analyses, and has many benefits, in terms of the specificity or sensitivity of amplification, because LNA-containing primers/probes form more stable duplexes with template DNA than probes lacking LNA. Here, we developed a new method for discriminating HV1 haplotypes from mitochondrial DNA (mtDNA) mixtures by applying PCR clamping using LNA. PCR clamping is based on the selective inhibition of amplification using LNA-containing probes, which can discriminate single-nucleotide differences. Before designing probes, we selected 171 sequences with single-nucleotide variations from the HV1 region, and evaluated the specificity of LNA-containing probes for them by predicting Tm values. The differences of Tm between mismatched and exactly matched probe-template duplexes depended markedly on the type of LNA nucleotides for discriminating single-nucleotide differences, and the cytosine LNA nucleotide at the site of variations in the probes was most effective to discriminate these differences. For mixture analysis, each probe targeted one or two variations (16209C, 16217C, 16257A/16261T, 16297C/16298C, 16304C, 16362C, or 16362T) that are particularly common in the Japanese population, and seven designed probes completely inhibited the amplification of exactly matched templates. We prepared mixed samples by mixing DNA from two individuals at a ratio of 1:9, 1:4, 1:1, 4:1, or 9:1, and then performed Sanger sequencing analysis after PCR clamping with each probe. Our method distinguished each haplotype at lower ratios from two-person mixtures, and enabled sensitive detection at 12 pg of total DNA including 600 copies of mtDNA. Moreover, we analyzed three-person mixtures with representative sequences, and detected the minor haplotype of one individual present at a rate of 10% by adding two selected probes. The ability to discriminate haplotypes in mixed samples by using LNA-mediated PCR clamping indicates the potential value of mtDNA analysis in criminal investigations.


Asunto(s)
ADN Mitocondrial/genética , Haplotipos , Oligonucleótidos , Reacción en Cadena de la Polimerasa/métodos , Pueblo Asiatico/genética , Sondas de ADN , Humanos , Japón , Polimorfismo de Nucleótido Simple , Sensibilidad y Especificidad , Análisis de Secuencia de ADN/métodos
15.
J Thromb Haemost ; 17(10): 1762-1771, 2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31237986

RESUMEN

BACKGROUND: Hypothermia, either therapeutically induced or accidental (ie, an involuntary decrease in core body temperature to <35°C), results in hemostatic disorders. However, it remains unclear whether hypothermia enhances or inhibits coagulation, especially in severe hypothermia. The present study evaluated the thrombocytic and hemostatic changes in hypothermic mice. METHODS: C57Bl/6 mice were placed at an ambient temperature of -20°C under general anesthesia. When the rectal temperature decreased to 15°C, 10 mice were immediately euthanized, while another 10 mice were rewarmed, kept in normal conditions for 24 hours, and then euthanized. These treatments were also performed in 20 splenectomized mice. RESULTS: The hypothermic mice had adhesion of CD62P-positive platelets with high expression of von Willebrand factor (vWF) in their spleens, while the status of the peripheral platelets was unchanged. Furthermore, the plasma levels of platelet factor 4 (PF4) and pro-platelet basic protein (PPBP), which are biomarkers for platelet degranulation, were significantly higher in hypothermic mice than in control mice, indicating that hypothermia activated the platelets in the splenic pool. Thus, we analyzed these biomarkers in asplenic mice. There was no increase in either PF4 or PPBP in splenectomized hypothermic mice. Additionally, the plasma D-dimer elevation and microthrombosis were caused in rewarmed mice, but not in asplenic rewarmed mice. CONCLUSIONS: Our results indicate that hypothermia leads to platelet activation in the spleen via the upregulation of vWF, and this activation causes hypercoagulability after rewarming.


Asunto(s)
Coagulación Sanguínea , Plaquetas/metabolismo , Hipotermia Inducida , Activación Plaquetaria , Bazo/metabolismo , Trombosis/etiología , Animales , Degranulación de la Célula , Quimiocinas CXC/sangre , Modelos Animales de Enfermedad , Productos de Degradación de Fibrina-Fibrinógeno/metabolismo , Fibrinólisis , Masculino , Ratones Endogámicos C57BL , Selectina-P/sangre , Factor Plaquetario 4/sangre , Transducción de Señal , Trombosis/sangre , Factor de von Willebrand/metabolismo
16.
Int J Pharm ; 351(1-2): 113-8, 2008 Mar 03.
Artículo en Inglés | MEDLINE | ID: mdl-17977676

RESUMEN

L-Carnitine plays an important role in lipid metabolism by facilitating the transport of long-chain fatty acids across the mitochondrial inner membrane followed by fatty acid beta-oxidation. It is known that members of the OCTN family play an important role in L-carnitine transport in the placenta. Investigation of drug-drug or drug-nutrient interaction in the placenta is important for establishment of safety drug medication during pregnancy. The aim of this study was to determine the effects of fluoroquinolones, inhibitors of OCTN2, on L-carnitine transport in the placenta which is known to have a high expression level of OCTN2. We investigated the inhibitory effect of five fluoroquinolones, ciprofloxacin (CPFX), gatifloxacin (GFLX), ofloxacin (OFLX), levofloxacin (LVFX) and grepafloxacin (GPFX), on L-carnitine transport mediated by OCTN2 in placental cell line BeWo cells. We found that all of the fluoroquinolones inhibited L-carnitine transport, GPFX being the strongest inhibitor. We also found that the inhibitory effects of LVFX and GPFX depended on their existence ratio of zwitterionic forms as, we reported previously. Furthermore, we elucidated the LVFX transport mechanism in BeWo cells. LVFX was transported actively by transporters. However, we found that LVFX transport was Na+-independent and l-carnitine had no inhibitory effect on LVFX transport, suggesting that LVFX acts as inhibitor of OCTN2, not as a substrate for OCTN2.


Asunto(s)
Carnitina/farmacocinética , Fluoroquinolonas/farmacología , Proteínas de Transporte de Catión Orgánico/metabolismo , Transporte Biológico , Línea Celular Tumoral , Ciprofloxacina/farmacología , Interacciones Farmacológicas , Gatifloxacina , Humanos , Levofloxacino , Ofloxacino/farmacología , Piperazinas/farmacología , Placenta/citología , Placenta/metabolismo , Sodio/metabolismo , Miembro 5 de la Familia 22 de Transportadores de Solutos
17.
Leg Med (Tokyo) ; 35: 29-33, 2018 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-30248610

RESUMEN

We analyzed the degradation level of DNA from buccal cells under humid conditions using quantitative PCR analysis. Gauze samples with buccal cells were incubated for up to 12 months under three different conditions (25 °C/dry, 25 °C/humid, or 40 °C/humid). The degradation was evaluated based on two degradation ratios (129:41 and 305:41 bp). DNA degraded slowly under the 25 °C/humid condition, and significant differences in the two degradation ratios were detected between 25 °C/dry and 25 °C/humid conditions after 12 months. Moreover, the degradation rapidly progressed under the 40 °C/humid condition, and the two degradation ratios in this condition were much lower than those from 25 °C/dry and 25 °C/humid conditions after a short incubation period (3 months). To evaluate the effect of DNA repair on low-copy degraded DNA, degenerate oligonucleotide-primed PCR (DOP-PCR) was performed before short tandem repeats (STR) genotyping. As a standard DOP-PCR, we used a 22-base primer with 10 degenerate sequences (5'-CTCGAGNNNNNNNNNNATGTGG-3'), and additionally designed DOP-PCR primers with 2, 4, 6, or 8 locked nucleic acids (LNAs). When slightly degraded DNA (305:41-bp ratio = 0.60) was used, DOP-PCR significantly increased the fluorescent intensity and success rate of genotyping using Identifiler and Globalfiler kits. In particular, the reaction with four LNAs produced the highest value. However, such benefits were not observed in the analysis of moderately degraded DNA (305:41-bp ratio = 0.13). Although the recovery rates of STR profiles by DOP-PCR were dependent on the degradation level of low-copy DNA, the effectiveness of DOP-PCR highlights the potential of LNA for degenerate sequences.


Asunto(s)
Reparación del ADN , ADN/metabolismo , Medicina Legal/métodos , Humedad , Mucosa Bucal/citología , Mucosa Bucal/metabolismo , Oligonucleótidos , Células Cultivadas , ADN/análisis , Técnicas de Genotipaje/métodos , Humanos , Repeticiones de Microsatélite , Reacción en Cadena de la Polimerasa/métodos , Temperatura , Factores de Tiempo
18.
Drug Metab Pharmacokinet ; 33(5): 215-218, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30177396

RESUMEN

MCT1 (SLC16A1), MCT4 (SLC16A3), and MCT11 (SLC16A11) are members of the monocarboxylate transporter (MCT) family. MCT1 and MCT4 transport pH-related monocarboxylates, such as lactate and pyruvate. MCT11 may also be a proton-coupled monocarboxylate transporter. Although alterations of these substrates are involved in the pathology of cancer and diabetes, little is known about MCT polymorphisms. In this study, genetic variation was evaluated in SLC16A1, SLC16A3, and SLC16A11 in the Japanese population (healthy volunteers, n = 92). Polymorphisms in the coding regions of the SLC16A1, SLC16A3, and SLC16A11 genes were screened by DNA sequencing. A single polymorphism that caused a change in the amino acid sequence was found in SLC16A1 (rs1049434 (T1470A, D490E)) and in SLC16A3 (rs368788465 (C641T, S214F)). Five polymorphisms were detected in the SLC16A11 gene (rs117767867 (G337A, V113I), rs13342692 (A380G, D127G), rs13342232 (T561C, silent), rs75418188 (G1018A, G340S), and rs75493593 (C1327A, P443T)). This information for a healthy population provides a comparison for further studies of patients with various diseases such as cancer and diabetes.


Asunto(s)
Variación Genética/genética , Transportadores de Ácidos Monocarboxílicos/genética , Simportadores/genética , Femenino , Voluntarios Sanos , Humanos , Japón , Masculino , Polimorfismo Genético/genética
19.
Leg Med (Tokyo) ; 32: 75-78, 2018 May.
Artículo en Inglés | MEDLINE | ID: mdl-29579533

RESUMEN

Electrical injury is damage caused by an electrical current passing through the body. We have previously reported that irregular stripes crossing skeletal muscle fibers (python pattern) and multiple small nuclei arranged in the longitudinal direction of the muscle fibers (chained nuclear change) are uniquely observed by histopathological analysis in the skeletal muscle tissues of patients with electrical injury. However, it remains unclear whether these phenomena are caused by the electrical current itself or by the joule heat generated by the electric current passing through the body. To clarify the causes underlying these changes, we applied electric and heat injury to the exteriorized rat soleus muscle in situ. Although both the python pattern and chained nuclear change were induced by electric injury, only the python pattern was induced by heat injury. Furthermore, a chained nuclear change was induced in the soleus muscle cells by electric current flow in physiological saline at 40 °C ex vivo, but a python pattern was not observed. When the skeletal muscle was exposed to electrical injury in cardiac-arrested rats, a python pattern was induced within 5 h after cardiac arrest, but no chained nuclear change was observed. Therefore, a chained nuclear change is induced by an electrical current alone in tissues in vital condition, whereas a python pattern is caused by joule heat, which may occur shortly after death. The degree and distribution of these skeletal muscle changes may be useful histological markers for analyzing cases of electrical injury in forensic medicine.


Asunto(s)
Biomarcadores , Quemaduras , Traumatismos por Electricidad/diagnóstico , Traumatismos por Electricidad/patología , Músculo Esquelético/lesiones , Músculo Esquelético/patología , Animales , Ratas
20.
Leg Med (Tokyo) ; 9(5): 237-40, 2007 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-17467322

RESUMEN

Sequence analysis of the hypervariable regions (HVRs) of mitochondrial DNA (mtDNA) are routinely performed in forensic casework, however, there are still issues to be resolved, such as the existence of multiple errors in published databases or the limitations of individual discrimination in certain populations. Here, we analyzed the coding region of mtDNA in detail by examining 36 haplogroup (HG)-defining single nucleotide polymorphisms (SNPs) using amplified product-length polymorphisms (APLP) method in conjunction with sequence analysis of HVR1 and HVR2 to establish a methodology for forensically reliable and practical mtDNA testing. The mtDNAs from 217 unrelated Japanese were examined and could be classified into 27 haplogroups. By combining the data of the coding region with those of HVRs, genetic diversity was slightly increased from 0.9817 to 0.9888 for HVR1/HG and from 0.9967 to 0.9970 for HVR1/HVR2/HG, as compared to the results of HVRs only. Moreover, in most cases, reliability of the HVR data could be confirmed by haplogroup motif analysis. Our mtDNA profiling method can provide reliable data in a time and cost-saving way due to the rapid and economical nature of APLP analysis.


Asunto(s)
Pueblo Asiatico/genética , Regiones Determinantes de Complementariedad/genética , ADN Mitocondrial/análisis , Haplotipos , Análisis de Secuencia de Proteína , Dermatoglifia del ADN , Genética de Población , Humanos , Japón , Reacción en Cadena de la Polimerasa , Polimorfismo de Nucleótido Simple
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