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1.

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.

Biancalani, Tommaso; Scalia, Gabriele; Buffoni, Lorenzo; Avasthi, Raghav; Lu, Ziqing; Sanger, Aman; Tokcan, Neriman; Vanderburg, Charles R; Segerstolpe, Åsa; Zhang, Meng; Avraham-Davidi, Inbal; Vickovic, Sanja; Nitzan, Mor; Ma, Sai; Subramanian, Ayshwarya; Lipinski, Michal; Buenrostro, Jason; Brown, Nik Bear; Fanelli, Duccio; Zhuang, Xiaowei; Macosko, Evan Z; Regev, Aviv.

Nat Methods; 18(11): 1352-1362, 2021 11.

Artículo en Inglés | MEDLINE | ID: mdl-34711971

2.

Massively parallel single-nucleus RNA-seq with DroNc-seq.

Habib, Naomi; Avraham-Davidi, Inbal; Basu, Anindita; Burks, Tyler; Shekhar, Karthik; Hofree, Matan; Choudhury, Sourav R; Aguet, François; Gelfand, Ellen; Ardlie, Kristin; Weitz, David A; Rozenblatt-Rosen, Orit; Zhang, Feng; Regev, Aviv.

Nat Methods; 14(10): 955-958, 2017 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-28846088

3.

TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics.

Mages, Simon; Moriel, Noa; Avraham-Davidi, Inbal; Murray, Evan; Watter, Jan; Chen, Fei; Rozenblatt-Rosen, Orit; Klughammer, Johanna; Regev, Aviv; Nitzan, Mor.

Nat Biotechnol; 41(10): 1465-1473, 2023 10.

Artículo en Inglés | MEDLINE | ID: mdl-36797494

4.

Emergence of division of labor in tissues through cell interactions and spatial cues.

Adler, Miri; Moriel, Noa; Goeva, Aleksandrina; Avraham-Davidi, Inbal; Mages, Simon; Adams, Taylor S; Kaminski, Naftali; Macosko, Evan Z; Regev, Aviv; Medzhitov, Ruslan; Nitzan, Mor.

Cell Rep; 42(5): 112412, 2023 05 30.

Artículo en Inglés | MEDLINE | ID: mdl-37086403

5.

Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade.

Kaur, Gurman; Porter, Caroline B M; Ashenberg, Orr; Lee, Jack; Riesenfeld, Samantha J; Hofree, Matan; Aggelakopoulou, Maria; Subramanian, Ayshwarya; Kuttikkatte, Subita Balaram; Attfield, Kathrine E; Desel, Christiane A E; Davies, Jessica L; Evans, Hayley G; Avraham-Davidi, Inbal; Nguyen, Lan T; Dionne, Danielle A; Neumann, Anna E; Jensen, Lise Torp; Barber, Thomas R; Soilleux, Elizabeth; Carrington, Mary; McVean, Gil; Rozenblatt-Rosen, Orit; Regev, Aviv; Fugger, Lars.

Nat Commun; 13(1): 4398, 2022 07 29.

Artículo en Inglés | MEDLINE | ID: mdl-35906236

6.

Zebrafish mutants provide insights into Apolipoprotein B functions during embryonic development and pathological conditions.

Templehof, Hanoch; Moshe, Noga; Avraham-Davidi, Inbal; Yaniv, Karina.

JCI Insight; 6(13)2021 07 08.

Artículo en Inglés | MEDLINE | ID: mdl-34236046

7.

Lipid signaling in the endothelium.

Avraham-Davidi, Inbal; Grunspan, Moshe; Yaniv, Karina.

Exp Cell Res; 319(9): 1298-305, 2013 May 15.

Artículo en Inglés | MEDLINE | ID: mdl-23328305

8.

Monocyte and Neutrophil Isolation, Migration, and Phagocytosis Assays.

Maini, Alexander; Foote, Juliet R; Hayhoe, Richard; Patel, Amit A; O'Brien, Alastair; Avraham-Davidi, Inbal; Yona, Simon.

Curr Protoc Immunol; 122(1): e53, 2018 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-29969195

9.

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.

Habib, Naomi; Li, Yinqing; Heidenreich, Matthias; Swiech, Lukasz; Avraham-Davidi, Inbal; Trombetta, John J; Hession, Cynthia; Zhang, Feng; Regev, Aviv.

Science; 353(6302): 925-8, 2016 08 26.

Artículo en Inglés | MEDLINE | ID: mdl-27471252

10.

Zebrafish as a model for apolipoprotein biology: comprehensive expression analysis and a role for ApoA-IV in regulating food intake.

Otis, Jessica P; Zeituni, Erin M; Thierer, James H; Anderson, Jennifer L; Brown, Alexandria C; Boehm, Erica D; Cerchione, Derek M; Ceasrine, Alexis M; Avraham-Davidi, Inbal; Tempelhof, Hanoch; Yaniv, Karina; Farber, Steven A.

Dis Model Mech; 8(3): 295-309, 2015 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-25633982

11.

On-site education of VEGF-recruited monocytes improves their performance as angiogenic and arteriogenic accessory cells.

Avraham-Davidi, Inbal; Yona, Simon; Grunewald, Myriam; Landsman, Limor; Cochain, Clement; Silvestre, Jean Sebastien; Mizrahi, Haim; Faroja, Mohammad; Strauss-Ayali, Dalit; Mack, Matthias; Jung, Steffen; Keshet, Eli.

J Exp Med; 210(12): 2611-25, 2013 Nov 18.

Artículo en Inglés | MEDLINE | ID: mdl-24166715

12.

ApoB-containing lipoproteins regulate angiogenesis by modulating expression of VEGF receptor 1.

Avraham-Davidi, Inbal; Ely, Yona; Pham, Van N; Castranova, Daniel; Grunspan, Moshe; Malkinson, Guy; Gibbs-Bar, Liron; Mayseless, Oded; Allmog, Gabriella; Lo, Brigid; Warren, Carmen M; Chen, Tom T; Ungos, Josette; Kidd, Kameha; Shaw, Kenna; Rogachev, Ilana; Wan, Wuzhou; Murphy, Philip M; Farber, Steven A; Carmel, Liran; Shelness, Gregory S; Iruela-Arispe, M Luisa; Weinstein, Brant M; Yaniv, Karina.

Nat Med; 18(6): 967-73, 2012 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-22581286

13.

Monocyte and neutrophil isolation and migration assays.

Yona, Simon; Hayhoe, Richard; Avraham-Davidi, Inbal.

Curr Protoc Immunol; Chapter 14: 14.15.1-14.15.14, 2010 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-20143313

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