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1.

Multiple genetic loci influence vaccine-induced protection against Mycobacterium tuberculosis in genetically diverse mice.

Kurtz, Sherry L; Baker, Richard E; Boehm, Frederick J; Lehman, Chelsea C; Mittereder, Lara R; Khan, Hamda; Rossi, Amy P; Gatti, Daniel M; Beamer, Gillian; Sassetti, Christopher M; Elkins, Karen L.

PLoS Pathog; 20(3): e1012069, 2024 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-38452145

2.

Chemical-genetic interaction mapping links carbon metabolism and cell wall structure to tuberculosis drug efficacy.

Koh, Eun-Ik; Oluoch, Peter O; Ruecker, Nadine; Proulx, Megan K; Soni, Vijay; Murphy, Kenan C; Papavinasasundaram, Kadamba; Reames, Charlotte J; Trujillo, Carolina; Zaveri, Anisha; Zimmerman, Matthew D; Aslebagh, Roshanak; Baker, Richard E; Shaffer, Scott A; Guinn, Kristine M; Fitzgerald, Michael; Dartois, Véronique; Ehrt, Sabine; Hung, Deborah T; Ioerger, Thomas R; Rubin, Eric J; Rhee, Kyu Y; Schnappinger, Dirk; Sassetti, Christopher M.

Proc Natl Acad Sci U S A; 119(15): e2201632119, 2022 04 12.

Artículo en Inglés | MEDLINE | ID: mdl-35380903

3.

Ribosome-bound Upf1 forms distinct 80S complexes and conducts mRNA surveillance.

Ganesan, Robin; Mangkalaphiban, Kotchaphorn; Baker, Richard E; He, Feng; Jacobson, Allan.

RNA; 28(12): 1621-1642, 2022 12.

Artículo en Inglés | MEDLINE | ID: mdl-36192133

4.

A budding yeast model for human disease mutations in the EXOSC2 cap subunit of the RNA exosome complex.

Sterrett, Maria C; Enyenihi, Liz; Leung, Sara W; Hess, Laurie; Strassler, Sarah E; Farchi, Daniela; Lee, Richard S; Withers, Elise S; Kremsky, Isaac; Baker, Richard E; Basrai, Munira A; van Hoof, Ambro; Fasken, Milo B; Corbett, Anita H.

RNA; 27(9): 1046-1067, 2021 09.

Artículo en Inglés | MEDLINE | ID: mdl-34162742

5.

Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast.

Au, Wei-Chun; Zhang, Tianyi; Mishra, Prashant K; Eisenstatt, Jessica R; Walker, Robert L; Ocampo, Josefina; Dawson, Anthony; Warren, Jack; Costanzo, Michael; Baryshnikova, Anastasia; Flick, Karin; Clark, David J; Meltzer, Paul S; Baker, Richard E; Myers, Chad; Boone, Charles; Kaiser, Peter; Basrai, Munira A.

PLoS Genet; 16(2): e1008597, 2020 02.

Artículo en Inglés | MEDLINE | ID: mdl-32032354

6.

Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression.

Subramaniyam, Siddharth; DeJesus, Michael A; Zaveri, Anisha; Smith, Clare M; Baker, Richard E; Ehrt, Sabine; Schnappinger, Dirk; Sassetti, Christopher M; Ioerger, Thomas R.

BMC Bioinformatics; 20(1): 603, 2019 Nov 21.

Artículo en Inglés | MEDLINE | ID: mdl-31752678

7.

Activation-induced cytidine deaminase induces reproducible DNA breaks at many non-Ig Loci in activated B cells.

Staszewski, Ori; Baker, Richard E; Ucher, Anna J; Martier, Raygene; Stavnezer, Janet; Guikema, Jeroen E J.

Mol Cell; 41(2): 232-42, 2011 Jan 21.

Artículo en Inglés | MEDLINE | ID: mdl-21255732

8.

Statistical analysis of genetic interactions in Tn-Seq data.

DeJesus, Michael A; Nambi, Subhalaxmi; Smith, Clare M; Baker, Richard E; Sassetti, Christopher M; Ioerger, Thomas R.

Nucleic Acids Res; 45(11): e93, 2017 Jun 20.

Artículo en Inglés | MEDLINE | ID: mdl-28334803

9.

Nbs1 ChIP-Seq Identifies Off-Target DNA Double-Strand Breaks Induced by AID in Activated Splenic B Cells.

Khair, Lyne; Baker, Richard E; Linehan, Erin K; Schrader, Carol E; Stavnezer, Janet.

PLoS Genet; 11(8): e1005438, 2015 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-26263206

10.

CENP-A targeting moves a step back.

Baker, Richard E.

Mol Cell; 33(4): 411-3, 2009 Feb 27.

Artículo en Inglés | MEDLINE | ID: mdl-19250900

11.

Misregulation of Scm3p/HJURP causes chromosome instability in Saccharomyces cerevisiae and human cells.

Mishra, Prashant K; Au, Wei-Chun; Choy, John S; Kuich, P Henning; Baker, Richard E; Foltz, Daniel R; Basrai, Munira A.

PLoS Genet; 7(9): e1002303, 2011 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-21980305

12.

Host-pathogen genetic interactions underlie tuberculosis susceptibility in genetically diverse mice.

Smith, Clare M; Baker, Richard E; Proulx, Megan K; Mishra, Bibhuti B; Long, Jarukit E; Park, Sae Woong; Lee, Ha-Na; Kiritsy, Michael C; Bellerose, Michelle M; Olive, Andrew J; Murphy, Kenan C; Papavinasasundaram, Kadamba; Boehm, Frederick J; Reames, Charlotte J; Meade, Rachel K; Hampton, Brea K; Linnertz, Colton L; Shaw, Ginger D; Hock, Pablo; Bell, Timothy A; Ehrt, Sabine; Schnappinger, Dirk; Pardo-Manuel de Villena, Fernando; Ferris, Martin T; Ioerger, Thomas R; Sassetti, Christopher M.

Elife; 112022 02 03.

Artículo en Inglés | MEDLINE | ID: mdl-35112666

13.

Distinct Bacterial Pathways Influence the Efficacy of Antibiotics against Mycobacterium tuberculosis.

Bellerose, Michelle M; Proulx, Megan K; Smith, Clare M; Baker, Richard E; Ioerger, Thomas R; Sassetti, Christopher M.

mSystems; 5(4)2020 Aug 04.

Artículo en Inglés | MEDLINE | ID: mdl-32753506

14.

Deposition of Centromeric Histone H3 Variant CENP-A/Cse4 into Chromatin Is Facilitated by Its C-Terminal Sumoylation.

Ohkuni, Kentaro; Suva, Evelyn; Au, Wei-Chun; Walker, Robert L; Levy-Myers, Reuben; Meltzer, Paul S; Baker, Richard E; Basrai, Munira A.

Genetics; 214(4): 839-854, 2020 04.

Artículo en Inglés | MEDLINE | ID: mdl-32111629

15.

Cell cycle-dependent association of polo kinase Cdc5 with CENP-A contributes to faithful chromosome segregation in budding yeast.

Mishra, Prashant K; Olafsson, Gudjon; Boeckmann, Lars; Westlake, Timothy J; Jowhar, Ziad M; Dittman, Lauren E; Baker, Richard E; D'Amours, Damien; Thorpe, Peter H; Basrai, Munira A.

Mol Biol Cell; 30(8): 1020-1036, 2019 04 01.

Artículo en Inglés | MEDLINE | ID: mdl-30726152

16.

Functionally Overlapping Variants Control Tuberculosis Susceptibility in Collaborative Cross Mice.

Smith, Clare M; Proulx, Megan K; Lai, Rocky; Kiritsy, Michael C; Bell, Timothy A; Hock, Pablo; Pardo-Manuel de Villena, Fernando; Ferris, Martin T; Baker, Richard E; Behar, Samuel M; Sassetti, Christopher M.

mBio; 10(6)2019 11 26.

Artículo en Inglés | MEDLINE | ID: mdl-31772048

17.

Common Variants in the Glycerol Kinase Gene Reduce Tuberculosis Drug Efficacy.

Bellerose, Michelle M; Baek, Seung-Hun; Huang, Chuan-Chin; Moss, Caitlin E; Koh, Eun-Ik; Proulx, Megan K; Smith, Clare M; Baker, Richard E; Lee, Jong Seok; Eum, Seokyong; Shin, Sung Jae; Cho, Sang-Nae; Murray, Megan; Sassetti, Christopher M.

mBio; 10(4)2019 07 30.

Artículo en Inglés | MEDLINE | ID: mdl-31363023

18.

N-terminal Sumoylation of Centromeric Histone H3 Variant Cse4 Regulates Its Proteolysis To Prevent Mislocalization to Non-centromeric Chromatin.

Ohkuni, Kentaro; Levy-Myers, Reuben; Warren, Jack; Au, Wei-Chun; Takahashi, Yoshimitsu; Baker, Richard E; Basrai, Munira A.

G3 (Bethesda); 8(4): 1215-1223, 2018 03 28.

Artículo en Inglés | MEDLINE | ID: mdl-29432128

19.

SUMO-Targeted Ubiquitin Ligases (STUbLs) Reduce the Toxicity and Abnormal Transcriptional Activity Associated With a Mutant, Aggregation-Prone Fragment of Huntingtin.

Ohkuni, Kentaro; Pasupala, Nagesh; Peek, Jennifer; Holloway, Grace Lauren; Sclar, Gloria D; Levy-Myers, Reuben; Baker, Richard E; Basrai, Munira A; Kerscher, Oliver.

Front Genet; 9: 379, 2018.

Artículo en Inglés | MEDLINE | ID: mdl-30279700

20.

A Lysine Acetyltransferase Contributes to the Metabolic Adaptation to Hypoxia in Mycobacterium tuberculosis.

Rittershaus, Emily S C; Baek, Seung-Hun; Krieger, Inna V; Nelson, Samantha J; Cheng, Yu-Shan; Nambi, Subhalaxmi; Baker, Richard E; Leszyk, John D; Shaffer, Scott A; Sacchettini, James C; Sassetti, Christopher M.

Cell Chem Biol; 25(12): 1495-1505.e3, 2018 12 20.

Artículo en Inglés | MEDLINE | ID: mdl-30318462

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