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1.
Environ Microbiol ; 19(2): 673-686, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-27871145

RESUMEN

Cyanobacteria are important phytoplankton in the Baltic Sea, an estuarine-like environment with pronounced north to south gradients in salinity and nutrient concentrations. Here, we present a metagenomic and -transcriptomic survey, with subsequent analyses targeting the genetic identity, phylogenetic diversity, and spatial distribution of Baltic Sea cyanobacteria. The cyanobacterial community constituted close to 12% of the microbial population sampled during a pre-bloom period (June-July 2009). The community was dominated by unicellular picocyanobacteria, specifically a few highly abundant taxa (Synechococcus and Cyanobium) with a long tail of low abundance representatives, and local peaks of bloom-forming heterocystous taxa. Cyanobacteria in the Baltic Sea differed genetically from those in adjacent limnic and marine waters as well as from cultivated and sequenced picocyanobacterial strains. Diversity peaked at brackish salinities 3.5-16 psu, with low N:P ratios. A shift in community composition from brackish to marine strains was accompanied by a change in the repertoire and expression of genes involved in salt acclimation. Overall, the pre-bloom cyanobacterial population was more genetically diverse, widespread and abundant than previously documented, with unicellular picocyanobacteria being the most abundant clade along the entire Baltic Sea salinity gradient.


Asunto(s)
Aclimatación , Cianobacterias/metabolismo , Salinidad , Agua de Mar/microbiología , Microbiología del Agua , Países Bálticos , Cianobacterias/clasificación , Cianobacterias/genética , Ecosistema , Variación Genética , Filogenia
2.
Environ Microbiol ; 18(12): 4442-4455, 2016 12.
Artículo en Inglés | MEDLINE | ID: mdl-27306515

RESUMEN

Rhodopsins are light-driven ion-pumping membrane proteins found in many organisms and are proposed to be of global importance for oceanic microbial energy generation. Several studies have focused on marine environments, with less exploration of rhodopsins in brackish waters. We investigated microbial rhodopsins in the Baltic Sea using size-fractionated metagenomic and metatranscriptomic datasets collected along a salinity gradient spanning from ∼0 to 35 PSU. The normalised genomic abundance of rhodopsins in Bacteria, as well as rhodopsin gene expression, was highest in the smallest size fraction (0.1-0.8 µm), relative to the medium (0.8-3.0 µm) and large (>3.0 µm) size fractions. The abundance of rhodopsins in the two smaller size fractions displayed a positive correlation with salinity. Proteobacteria and Bacteroidetes rhodopsins were the most abundant while Actinobacteria rhodopsins, or actinorhodopsins, were common at lower salinities. Phylogenetic analysis indicated that rhodopsins have adapted independently to the marine-brackish transition on multiple occasions, giving rise to green light-adapted variants from ancestral blue light-adapted ones. A notable diversity of viral-like rhodopsins was also detected in the dataset and potentially linked with eukaryotic phytoplankton blooms. Finally, a new clade of likely proton-pumping rhodopsin with non-canonical amino acids in the spectral tuning and proton accepting site was identified.


Asunto(s)
Bacterias/genética , Bacterias/metabolismo , Océanos y Mares , Rodopsinas Microbianas/química , Rodopsinas Microbianas/genética , Microbiología del Agua , Adaptación Fisiológica/genética , Regulación Bacteriana de la Expresión Génica/fisiología , Luz , Filogenia , Fitoplancton/metabolismo
3.
BMC Genomics ; 16: 193, 2015 Mar 17.
Artículo en Inglés | MEDLINE | ID: mdl-25885210

RESUMEN

BACKGROUND: Insertion sequences (ISs) are approximately 1 kbp long "jumping" genes found in prokaryotes. ISs encode the protein Transposase, which facilitates the excision and reinsertion of ISs in genomes, making these sequences a type of class I ("cut-and-paste") Mobile Genetic Elements. ISs are proposed to be involved in the reductive evolution of symbiotic prokaryotes. Our previous sequencing of the genome of the cyanobacterium 'Nostoc azollae' 0708, living in a tight perpetual symbiotic association with a plant (the water fern Azolla), revealed the presence of an eroding genome, with a high number of insertion sequences (ISs) together with an unprecedented large proportion of pseudogenes. To investigate the role of ISs in the reductive evolution of 'Nostoc azollae' 0708, and potentially in the formation of pseudogenes, a bioinformatic investigation of the IS identities and positions in 47 cyanobacterial genomes was conducted. To widen the scope, the IS contents were analysed qualitatively and quantitatively in 20 other genomes representing both free-living and symbiotic bacteria. RESULTS: Insertion Sequences were not randomly distributed in the bacterial genomes and were found to transpose short distances from their original location ("local hopping") and pseudogenes were enriched in the vicinity of IS elements. In general, symbiotic organisms showed higher densities of IS elements and pseudogenes than non-symbiotic bacteria. A total of 1108 distinct repeated sequences over 500 bp were identified in the 67 genomes investigated. In the genome of 'Nostoc azollae' 0708, IS elements were apparent at 970 locations (14.3%), with 428 being full-length. Morphologically complex cyanobacteria with large genomes showed higher frequencies of IS elements, irrespective of life style. CONCLUSIONS: The apparent co-location of IS elements and pseudogenes found in prokaryotic genomes implies earlier IS transpositions into genes. As transpositions tend to be local rather than genome wide this likely explains the proximity between IS elements and pseudogenes. These findings suggest that ISs facilitate the reductive evolution in for instance in the symbiotic cyanobacterium 'Nostoc azollae' 0708 and in other obligate prokaryotic symbionts.


Asunto(s)
Cianobacterias/genética , Elementos Transponibles de ADN , Evolución Molecular , Seudogenes , Simbiosis/genética , Cianobacterias/metabolismo , Orden Génico , Tamaño del Genoma , Genoma Bacteriano , Mutagénesis Insercional , Filogenia , Secuencias Repetitivas de Ácidos Nucleicos
4.
Mar Drugs ; 11(8): 3091-108, 2013 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-23966039

RESUMEN

Cyanobacteria produce a range of secondary metabolites, one being the neurotoxic non-protein amino acid ß-N-methylamino-L-alanine (BMAA), proposed to be a causative agent of human neurodegeneration. As for most cyanotoxins, the function of BMAA in cyanobacteria is unknown. Here, we examined the effects of BMAA on the physiology of the filamentous nitrogen-fixing cyanobacterium Nostoc sp. PCC 7120. Our data show that exogenously applied BMAA rapidly inhibits nitrogenase activity (acetylene reduction assay), even at micromolar concentrations, and that the inhibition was considerably more severe than that induced by combined nitrogen sources and most other amino acids. BMAA also caused growth arrest and massive cellular glycogen accumulation, as observed by electron microscopy. With nitrogen fixation being a process highly sensitive to oxygen species we propose that the BMAA effects found here may be related to the production of reactive oxygen species, as reported for other organisms.


Asunto(s)
Aminoácidos Diaminos/metabolismo , Fijación del Nitrógeno/fisiología , Nostoc/metabolismo , Especies Reactivas de Oxígeno/metabolismo , Aminoácidos/metabolismo , Aminoácidos Diaminos/administración & dosificación , Toxinas de Cianobacterias , Glucógeno/metabolismo , Microscopía Electrónica , Nitrogenasa/metabolismo
5.
Proc Natl Acad Sci U S A ; 107(20): 9252-7, 2010 May 18.
Artículo en Inglés | MEDLINE | ID: mdl-20439734

RESUMEN

beta-methylamino-L-alanine (BMAA), a neurotoxic nonprotein amino acid produced by most cyanobacteria, has been proposed to be the causative agent of devastating neurodegenerative diseases on the island of Guam in the Pacific Ocean. Because cyanobacteria are widespread globally, we hypothesized that BMAA might occur and bioaccumulate in other ecosystems. Here we demonstrate, based on a recently developed extraction and HPLC-MS/MS method and long-term monitoring of BMAA in cyanobacterial populations of a temperate aquatic ecosystem (Baltic Sea, 2007-2008), that BMAA is biosynthesized by cyanobacterial genera dominating the massive surface blooms of this water body. BMAA also was found at higher concentrations in organisms of higher trophic levels that directly or indirectly feed on cyanobacteria, such as zooplankton and various vertebrates (fish) and invertebrates (mussels, oysters). Pelagic and benthic fish species used for human consumption were included. The highest BMAA levels were detected in the muscle and brain of bottom-dwelling fishes. The discovery of regular biosynthesis of the neurotoxin BMAA in a large temperate aquatic ecosystem combined with its possible transfer and bioaccumulation within major food webs, some ending in human consumption, is alarming and requires attention.


Asunto(s)
Aminoácidos Diaminos/farmacocinética , Cianobacterias/química , Exposición a Riesgos Ambientales , Cadena Alimentaria , Toxinas Marinas/farmacocinética , Neurotoxinas/farmacocinética , Aminoácidos Diaminos/biosíntesis , Aminoácidos Diaminos/metabolismo , Animales , Cromatografía Líquida de Alta Presión , Toxinas de Cianobacterias , Peces/metabolismo , Humanos , Invertebrados/química , Toxinas Marinas/biosíntesis , Toxinas Marinas/metabolismo , Neurotoxinas/biosíntesis , Neurotoxinas/metabolismo , Mar del Norte , Suecia , Espectrometría de Masas en Tándem , Zooplancton/química
6.
Microbiology (Reading) ; 158(Pt 2): 345-352, 2012 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-22053003

RESUMEN

The establishment of non-diazotrophic cultures of the filamentous marine cyanobacterium Trichodesmium erythraeum IMS101 enabled the first detailed investigation of the process leading to the development of its unique nitrogen-fixing cell type, the diazocyte. Trichome heterogeneity was apparent already within 3-8 h, while the differentiation of mature diazocytes, containing the nitrogenase enzyme, required 27 h after the removal of combined nitrogen. The distribution of 'pro-diazocytes' within the trichomes correlates with the localization of mature diazocytes, which suggests that pattern regulation is an early event during diazocyte development. The development was initially identified as changes in the subcellular ultrastructure, most notably the degradation of glycogen granules and gas vacuoles. These changes were preceded by the induced expression of the global nitrogen regulator ntcA at an early stage of combined nitrogen deprivation, followed by elevated expression of genes related to nitrogen metabolism and their corresponding proteins. The strongest induction (10-fold) was related to the transcription of the respiratory gene coxB2, apparent already at an early stage, which suggests an important role for respiration and the subsequent energy generation in the subcellular changes found, and in the creation of the reducing environment required for nitrogen fixation in diazocytes.


Asunto(s)
Cianobacterias/crecimiento & desarrollo , Agua de Mar/microbiología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Cianobacterias/enzimología , Cianobacterias/genética , Cianobacterias/aislamiento & purificación , Regulación Bacteriana de la Expresión Génica , Fijación del Nitrógeno , Nitrogenasa/genética , Nitrogenasa/metabolismo
7.
Proteomics ; 11(3): 406-19, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21268270

RESUMEN

Trichodesmium is a marine filamentous diazotrophic cyanobacterium and an important contributor of "new" nitrogen in the oligotrophic surface waters of the tropical and sub-tropical oceans. It is unique in that it exclusively fixes N(2) at daytime, although it belongs to the non-heterocystous filamentous segment of the cyanobacterial radiation. Here we present the first quantitative proteomic analysis of Trichodesmium erythraeum IMS101 when grown under different nitrogen regimes using 2-DE/MALDI-TOF-MS. Addition of combined nitrogen (NO3-) prevented development of the morphological characteristics of the N(2)-fixing cell type (diazocytes), inhibited expression of the nitrogenase enzyme subunits and consequently N(2) fixation activity. The diazotrophic regime (N(2) versus NO3- cultures) elicited the differential expression of more than 100 proteins, which represented 13.5% of the separated proteins. Besides proteins directly related to N(2) fixation, proteins involved in the synthesis of reducing equivalents and the generation of a micro-oxic environment were strongly up-regulated, as was in particular Dps, a protein related to iron acquisition and potentially other vital cellular processes. In contrast, proteins involved in the S-adenosylmethionine (SAM) cycle, synthesis of amino acids and production of carbon skeletons for storage and synthesis of amino acids were suppressed. The data are discussed in the context of Trichodesmium's unusual N(2)-fixing physiology.


Asunto(s)
Cianobacterias/efectos de los fármacos , Cianobacterias/metabolismo , Nitrógeno/farmacología , Proteoma/metabolismo , Proteómica , Cianobacterias/crecimiento & desarrollo , Electroforesis en Gel Bidimensional , Immunoblotting , Proteoma/análisis , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
8.
BMC Evol Biol ; 11: 187, 2011 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-21718514

RESUMEN

BACKGROUND: Cyanobacteria belong to an ancient group of photosynthetic prokaryotes with pronounced variations in their cellular differentiation strategies, physiological capacities and choice of habitat. Sequencing efforts have shown that genomes within this phylum are equally diverse in terms of size and protein-coding capacity. To increase our understanding of genomic changes in the lineage, the genomes of 58 contemporary cyanobacteria were analysed for shared and unique orthologs. RESULTS: A total of 404 protein families, present in all cyanobacterial genomes, were identified. Two of these are unique to the phylum, corresponding to an AbrB family transcriptional regulator and a gene that escapes functional annotation although its genomic neighbourhood is conserved among the organisms examined. The evolution of cyanobacterial genome sizes involves a mix of gains and losses in the clade encompassing complex cyanobacteria, while a single event of reduction is evident in a clade dominated by unicellular cyanobacteria. Genome sizes and gene family copy numbers evolve at a higher rate in the former clade, and multi-copy genes were predominant in large genomes. Orthologs unique to cyanobacteria exhibiting specific characteristics, such as filament formation, heterocyst differentiation, diazotrophy and symbiotic competence, were also identified. An ancestral character reconstruction suggests that the most recent common ancestor of cyanobacteria had a genome size of approx. 4.5 Mbp and 1678 to 3291 protein-coding genes, 4%-6% of which are unique to cyanobacteria today. CONCLUSIONS: The different rates of genome-size evolution and multi-copy gene abundance suggest two routes of genome development in the history of cyanobacteria. The expansion strategy is driven by gene-family enlargment and generates a broad adaptive potential; while the genome streamlining strategy imposes adaptations to highly specific niches, also reflected in their different functional capacities. A few genomes display extreme proliferation of non-coding nucleotides which is likely to be the result of initial expansion of genomes/gene copy number to gain adaptive potential, followed by a shift to a life-style in a highly specific niche (e.g. symbiosis). This transition results in redundancy of genes and gene families, leading to an increase in junk DNA and eventually to gene loss. A few orthologs can be correlated with specific phenotypes in cyanobacteria, such as filament formation and symbiotic competence; these constitute exciting exploratory targets.


Asunto(s)
Cianobacterias/genética , Evolución Molecular , Duplicación de Gen , Genoma Bacteriano , Fenotipo , Filogenia
9.
Analyst ; 135(1): 127-32, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-20024192

RESUMEN

Beta-N-methylamino-L-alanine (BMAA) is a non-protein amino acid, thought to be inflicting neurodegenerative diseases related to ALS/PDC in human beings. Due to conflicting data concerning the presence of BMAA in various biological matrixes, we present a robust and sensitive method for high confidence identification of BMAA after derivatization by 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate (AQC). The efficient sample pretreatment in combination with LC-MS/MS SRM enables chromatographic separation of BMAA from the isomer 2,3-diaminobutyric acid (DAB). The method is applicable for selective BMAA/DAB detection in various biological samples ranging from a prokaryotic cyanobacterium to eukaryotic fish.


Asunto(s)
Aminoácidos Diaminos/análisis , Aminobutiratos/análisis , Cromatografía Líquida de Alta Presión/métodos , Espectrometría de Masa por Ionización de Electrospray/métodos , Aminoácidos Diaminos/aislamiento & purificación , Aminobutiratos/aislamiento & purificación , Cianobacterias/química , Cianobacterias/metabolismo , Toxinas de Cianobacterias , Humanos , Enfermedades Neurodegenerativas/metabolismo , Extracción en Fase Sólida
10.
New Phytol ; 181(1): 53-61, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-19076717

RESUMEN

The nitrogen-fixing symbiosis between cyanobacteria and the water fern Azolla microphylla is, in contrast to other cyanobacteria-plant symbioses, the only one of a perpetual nature. The cyanobacterium is vertically transmitted between the plant generations, via vegetative fragmentation of the host or sexually within megasporocarps. In the latter process, subsets of the cyanobacterial population living endophytically in the Azolla leaves function as inocula for the new plant generations. Using electron microscopy and immunogold-labeling, the fate of the cyanobacterium during colonization and development of the megasporocarp was revealed. On entering the indusium chamber of the megasporocarps as small-celled motile cyanobacterial filaments (hormogonia), these differentiated into large thick-walled akinetes (spores) in a synchronized manner. This process was accompanied by cytoplasmic reorganizations and the release of numerous membrane vesicles, most of which contained DNA, and the formation of a highly structured biofilm. Taken together the data revealed complex adaptations in the cyanobacterium during its transition between plant generations.


Asunto(s)
Cianobacterias/fisiología , Helechos/fisiología , Simbiosis/fisiología , Biopelículas , Diferenciación Celular , Estructuras de la Membrana Celular/ultraestructura , Cianobacterias/ultraestructura , Helechos/ultraestructura , Fijación del Nitrógeno/fisiología , Reproducción
11.
Amino Acids ; 36(1): 43-8, 2009 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-18188663

RESUMEN

Two different assays have been developed and used in order to investigate the optimal conditions for derivatization and detection of acid beta-N-methyl-amino-L-alanine (BMAA) in a cyanobacterial sample. BMAA was extracted from cyanobacterial cultures both from the cytosolic ("free") fraction and in the precipitated ("protein") fraction using a newly developed extraction scheme and the sample matrix was standardized according to protein concentration to ensure the highest possible derivative yield. A rapid and sensitive HPLC method for fluorescence detection of the non-protein amino acid BMAA in cyanobacteria, utilizing the Waters AccQ-Tag chemistry and Chromolith Performance RP-18e columns was developed. Using this new method and utilizing a different buffer system and column than that recommended by Waters, we decreased the time between injections by 75%. The limit of quantification was determined to be 12 nmol and limit of detection as 120 fmol. The linear range was in the range of 8.5 nmol-84 pmol. Accuracy and precision were well within FDA guidelines for bioanalysis.


Asunto(s)
Aminoácidos Diaminos/química , Cianobacterias/química , Toxinas de Cianobacterias , Técnicas de Dilución del Indicador
12.
J Exp Bot ; 59(5): 1023-34, 2008.
Artículo en Inglés | MEDLINE | ID: mdl-18065763

RESUMEN

Cyanobacteria are able to form stable nitrogen-fixing symbioses with diverse eukaryotes. To extend our understanding of adaptations imposed by plant hosts, two-dimensional gel electrophoresis and mass spectrometry (MS) were used for comparative protein expression profiling of a cyanobacterium (cyanobiont) dwelling in leaf cavities of the water-fern Azolla filiculoides. Homology-based protein identification using peptide mass fingerprinting [matrix-assisted laser desorption ionization-time of flight (MALDI-TOF-MS)], tandem MS analyses, and sequence homology searches resulted in an identification success rate of 79% of proteins analysed in the unsequenced cyanobiont. Compared with a free-living strain, processes related to energy production, nitrogen and carbon metabolism, and stress-related functions were up-regulated in the cyanobiont while photosynthesis and metabolic turnover rates were down-regulated, stressing a slow heterotrophic mode of growth, as well as high heterocyst frequencies and nitrogen-fixing capacities. The first molecular data set on the nature of the NifH post-translational modification in cyanobacteria was also obtained: peptide mass spectra of the protein demonstrated the presence of a 300-400 Da protein modification localized to a specific 13 amino acid sequence, within the part of the protein that is ADP-ribosylated in other bacteria and close to the active site of nitrogenase. Furthermore, the distribution of the highest scoring database hits for the identified proteins points to the possibility of using proteomic data in taxonomy.


Asunto(s)
Cianobacterias/química , Helechos/microbiología , Oxidorreductasas/metabolismo , Proteómica , Simbiosis , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Metabolismo de los Hidratos de Carbono , Dióxido de Carbono/metabolismo , Cianobacterias/fisiología , Electroforesis en Gel Bidimensional , Helechos/fisiología , Datos de Secuencia Molecular , Fijación del Nitrógeno , Oxidorreductasas/química , Mapeo Peptídico , Fotosíntesis , Análisis por Matrices de Proteínas , Análisis de Secuencia de Proteína , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
13.
FEMS Microbiol Ecol ; 63(2): 205-21, 2008 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-18199084

RESUMEN

Benthic nitrogen fixation has been estimated to contribute 15 Tg N year(-1) to the marine nitrogen budget. With benthic marine nitrogen fixation being largely overlooked in more recent surveys, a refocus on benthic diazotrophy was considered important. Variations in nitrogenase activity (acetylene reduction-gas chromatography) in a tropical lagoon in the western Indian Ocean (Zanzibar, Tanzania) were monitored over a 3-year period (2003-2005) and related to cyanobacterial and diazotrophic microbial diversity using a polyphasic approach. Different nitrogenase activity patterns were discerned, with the predominant pattern being high daytime activities combined with low nighttime activities. Analyses of the morphological and 16S rRNA gene diversity among cyanobacteria revealed filamentous nonheterocystous (Oscillatoriales) and unicellular (Chroococcales) representatives to be predominant. Analyses of the nifH gene diversity showed that the major phylotypes belonged to noncyanobacterial prokaryotes. However, as shown by cyanobacterial selective nifH-denaturing gradient gel electrophoresis analysis, cyanobacterial nifH gene sequences were present at all sites. Several nifH and 16S rRNA gene phylotypes were related to uncultured cyanobacteria or bacteria of geographically distant habitats, stressing the widespread occurrence of still poorly characterized microorganisms in tropical benthic marine communities.


Asunto(s)
Cianobacterias/aislamiento & purificación , Nitrogenasa/metabolismo , Oxidorreductasas/genética , Agua de Mar/microbiología , Secuencia de Bases , Biodiversidad , Clonación Molecular , Cianobacterias/clasificación , Cianobacterias/genética , Cianobacterias/ultraestructura , Microscopía Electrónica de Rastreo , Datos de Secuencia Molecular , Filogenia , Polimorfismo de Longitud del Fragmento de Restricción , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ARN , Tanzanía , Clima Tropical
14.
J Plant Physiol ; 164(1): 11-8, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-16603273

RESUMEN

The cellular and subcellular localization of FtsZ, a bacterial cell division protein, were investigated in vegetative cells of the filamentous cyanobacterium Nostoc/Anabaena sp. strain PCC 7120. We show by using immunogold-transmission electron microscopy that FtsZ forms a ring structure in a filamentous cyanobacterium, similar to observations in unicellular bacteria and chloroplasts. This finding, that the FtsZ in a filamentous cyanobacterium accumulates at the growing edge of the division septa leading to the formation of the typical prokaryotic Z-ring arrangement, is novel. Moreover, an apparent cytoplasmic distribution of FtsZ occurred in vegetative cells. During the transition of vegetative cells into terminally differentiated heterocysts the cytoplasmic FtsZ levels decreased substantially. These findings suggest a conserved function of FtsZ among prokaryotes, including filamentous cyanobacteria with cell differentiation capacity, and possibly a role of FtsZ as a cytoskeletal component in the cytoplasm.


Asunto(s)
Proteínas Bacterianas/fisiología , Proteínas del Citoesqueleto/fisiología , Nostoc/metabolismo , Proteínas Recombinantes de Fusión/análisis , Proteínas Bacterianas/análisis , Proteínas Bacterianas/genética , Diferenciación Celular/genética , División Celular/genética , Proteínas del Citoesqueleto/análisis , Proteínas del Citoesqueleto/genética , Electroforesis en Gel de Poliacrilamida , Escherichia coli/genética , Immunoblotting , Microscopía Electrónica de Transmisión , Nostoc/genética , Nostoc/ultraestructura
15.
ISME J ; 11(11): 2611-2623, 2017 11.
Artículo en Inglés | MEDLINE | ID: mdl-28731472

RESUMEN

Transposases are mobile genetic elements suggested to have an important role in bacterial genome plasticity and host adaptation but their transcriptional activity in natural bacterial communities is largely unexplored. Here we analyzed metagenomes and -transcriptomes of size fractionated (0.1-0.8, 0.8-3.0 and 3.0-200 µm) bacterial communities from the brackish Baltic Sea, and adjacent marine waters. The Baltic Sea transposase levels, up to 1.7% of bacterial genes and 2% of bacterial transcripts, were considerably higher than in marine waters and similar to levels reported for extreme environments. Large variations in expression were found between transposase families and groups of bacteria, with a two-fold higher transcription in Cyanobacteria than in any other phylum. The community-level results were corroborated at the genus level by Synechococcus transposases reaching up to 5.2% of genes and 6.9% of transcripts, which is in contrast to marine Synechococcus that largely lack these genes. Levels peaked in Synechococcus from the largest size fraction, suggesting high frequencies of lateral gene transfer and high genome plasticity in colony-forming picocyanobacteria. Together, the results support an elevated rate of transposition-based genome change and adaptation in bacterial populations of the Baltic Sea, and possibly also of other highly dynamic estuarine waters.


Asunto(s)
Bacterias/enzimología , Proteínas Bacterianas/genética , Agua de Mar/microbiología , Transposasas/genética , Bacterias/clasificación , Bacterias/genética , Bacterias/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Países Bálticos , Transferencia de Gen Horizontal , Genoma Bacteriano , Metagenoma , Filogenia , Transposasas/metabolismo
16.
Syst Appl Microbiol ; 40(2): 102-113, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-28081924

RESUMEN

Cyanobacteria are widely distributed primary producers with significant implications for the global biogeochemical cycles of carbon and nitrogen. Diazotrophic cyanobacteria of subsection V (Order Stigonematales) are particularly ubiquitous in photoautotrophic microbial mats of hot springs. The Stigonematal cyanobacterium strain CHP1 isolated from the Porcelana hot spring (Chile) was one of the major contributors of the new nitrogen through nitrogen fixation. Further morphological and genetic characterization verified that the strain CHP1 belongs to Stigonematales, and it formed a separate clade together with other thermophiles of the genera Fischerella and Mastigocladus. Strain CHP1 fixed maximum N2 in the light, independent of the temperature range. At 50°C nifH gene transcripts showed high expression during the light period, whereas the nifH gene expression at 45°C was arrhythmic. The strain displayed a high affinity for nitrate and a low tolerance for high ammonium concentrations, whereas the narB and glnA genes showed higher expression in light and at the beginning of the dark phase. It is proposed that Mastigocladus sp. strain CHP1 would represent a good model for the study of subsection V thermophilic cyanobacteria, and for understanding the adaptations of these photoautotrophic organisms inhabiting microbial mats in hot springs globally.


Asunto(s)
Cianobacterias/efectos de los fármacos , Cianobacterias/efectos de la radiación , Manantiales de Aguas Termales/microbiología , Nitrógeno/metabolismo , Compuestos de Amonio/metabolismo , Chile , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Perfilación de la Expresión Génica , Glutamato-Amoníaco Ligasa/biosíntesis , Luz , Nitratos/metabolismo , Fijación del Nitrógeno , Oxidorreductasas/biosíntesis , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Temperatura
17.
mSystems ; 2(1)2017.
Artículo en Inglés | MEDLINE | ID: mdl-28217745

RESUMEN

Metagenomic and metatranscriptomic data were generated from size-fractionated samples from 11 sites within the Baltic Sea and adjacent marine waters of Kattegat and freshwater Lake Torneträsk in order to investigate the diversity, distribution, and transcriptional activity of virioplankton. Such a transect, spanning a salinity gradient from freshwater to the open sea, facilitated a broad genome-enabled investigation of natural as well as impacted aspects of Baltic Sea viral communities. Taxonomic signatures representative of phages within the widely distributed order Caudovirales were identified with enrichments in lesser-known families such as Podoviridae and Siphoviridae. The distribution of phage reported to infect diverse and ubiquitous heterotrophic bacteria (SAR11 clades) and cyanobacteria (Synechococcus sp.) displayed population-level shifts in diversity. Samples from higher-salinity conditions (>14 practical salinity units [PSU]) had increased abundances of viruses for picoeukaryotes, i.e., Ostreococcus. These data, combined with host diversity estimates, suggest viral modulation of diversity on the whole-community scale, as well as in specific prokaryotic and eukaryotic lineages. RNA libraries revealed single-stranded DNA (ssDNA) and RNA viral populations throughout the Baltic Sea, with ssDNA phage highly represented in Lake Torneträsk. Further, our data suggest relatively high transcriptional activity of fish viruses within diverse families known to have broad host ranges, such as Nodoviridae (RNA), Iridoviridae (DNA), and predicted zoonotic viruses that can cause ecological and economic damage as well as impact human health. IMPORTANCE Inferred virus-host relationships, community structures of ubiquitous ecologically relevant groups, and identification of transcriptionally active populations have been achieved with our Baltic Sea study. Further, these data, highlighting the transcriptional activity of viruses, represent one of the more powerful uses of omics concerning ecosystem health. The use of omics-related data to assess ecosystem health holds great promise for rapid and relatively inexpensive determination of perturbations and risk, explicitly with regard to viral assemblages, as no single marker gene is suitable for widespread taxonomic coverage.

18.
Mol Plant Microbe Interact ; 19(11): 1251-61, 2006 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-17073307

RESUMEN

Molecular mechanisms behind adaptations in the cyanobacterium (Nostoc sp.) to a life in endosymbiosis with plants are still not clarified, nor are the interactions between the partners. To get further insights, the proteome of a Nostoc strain, freshly isolated from the symbiotic gland tissue of the angiosperm Gunnera manicata Linden, was analyzed and compared with the proteome of the same strain when free-living. Extracted proteins were separated by two-dimensional gel electrophoresis and were identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry combined with tandem mass spectrometry. Even when the higher percentage of differentiated cells (heterocysts) in symbiosis was compensated for, the majority of the proteins detected in the symbiotic cyanobacteria were present in the free-living counterpart, indicating that most cellular processes were common for both stages. However, differential expression profiling revealed a significant number of proteins to be down-regulated or missing in the symbiotic stage, while others were more abundant or only expressed in symbiosis. The differential protein expression was primarily connected to i) cell envelope-associated processes, including proteins involved in exopolysaccharide synthesis and surface and membrane associated proteins, ii) to changes in growth and metabolic activities (C and N), including upregulation of nitrogenase and proteins involved in the oxidative pentose phosphate pathway and downregulation of Calvin cycle enzymes, and iii) to the dark, microaerobic conditions offered inside the Gunnera gland cells, including changes in relative phycobiliprotein concentrations. This is the first comprehensive analysis of proteins in the symbiotic state.


Asunto(s)
Magnoliopsida/microbiología , Nostoc/genética , Proteoma/metabolismo , Simbiosis/fisiología , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/genética , Metabolismo de los Hidratos de Carbono , Carbono/metabolismo , Electroforesis en Gel Bidimensional , Metabolismo Energético , Perfilación de la Expresión Génica , Espectrometría de Masas/métodos , Nitrógeno/metabolismo , Nostoc/metabolismo , Nostoc/fisiología , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
19.
FEMS Microbiol Ecol ; 55(3): 382-90, 2006 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-16466377

RESUMEN

Chemotaxis may be important when forming cyanobacterial symbioses. However, knowledge of cyanobacterial attraction towards plants and factors affecting chemotaxis is limited. Chemo-attraction was observed in Nostoc strains 8964:3 and PCC 73102 towards exudate or crushed extract of the natural hosts Gunnera manicata, Cycas revoluta and Blasia pusilla, and the nonhost plants Trifolium repens, Arabidopsis thaliana and Oryza sativa. As all tested plant extracts generated chemotaxis, the possibility to attract cyanobacteria may be widespread in plants. Chemotaxis was reduced by increased temperature and darkness and was stimulated by phosphorous and iron starvation and elevated salt concentration. Sugars (arabinose, galactose, and glucose) had a positive effect on chemotaxis, whereas flavonoids (chrysin and naringenin) and amino acids (methionine, glycine, serine, phenylalanine, glutamine, and lysine) had no effect.


Asunto(s)
Quimiotaxis/fisiología , Cianobacterias/fisiología , Cycas/microbiología , Hepatophyta/microbiología , Magnoliopsida/microbiología , Extractos Vegetales/química , Simbiosis , Arabidopsis/química , Arabidopsis/microbiología , Cianobacterias/crecimiento & desarrollo , Cycas/química , Hepatophyta/química , Magnoliopsida/química , Oryza/química , Oryza/microbiología , Trifolium/química , Trifolium/microbiología
20.
FEMS Microbiol Ecol ; 58(3): 323-32, 2006 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-17117977

RESUMEN

Rates of carbon (C) specific growth and nitrogen (N2) fixation were monitored in cultures of Baltic Sea Nodularia and Aphanizomenon exposed to gradual limitation by inorganic phosphorus (P). Both cyanobacteria responded by decreased cellular P content followed by lowered rates of growth and N2 fixation. C-specific growth and cellular N content changed faster in Aphanizomenon both when inorganic P was lowered as well as during reintroduction of P. Aphanizomenon also showed a more rapid increase in N-specific N2 fixation associated with increased C-specific growth. When ambient concentrations of inorganic P declined, both cyanobacteria displayed higher rates of alkaline phosphatase (APase) activity. Lower substrate half-saturation constants (KM) and higher Vmax : KM ratio of the APase enzyme associated with Nodularia suggest a higher affinity for dissolved organic P (DOP) substrate than Aphanizomenon. Aphanizomenon, which appears more sensitive to changes in ambient dissolved inorganic P, may be adapted to environments with elevated concentrations of P or repeated intrusions of nutrient-rich water. Nodularia on the other hand, with its higher tolerance to increased P starvation may have an ecological advantage in stratified surface waters of the Baltic Sea during periods of low P availability.


Asunto(s)
Aphanizomenon/efectos de los fármacos , Aphanizomenon/crecimiento & desarrollo , Nodularia/efectos de los fármacos , Nodularia/crecimiento & desarrollo , Fosfatos/fisiología , Aphanizomenon/metabolismo , Países Bálticos , Fijación del Nitrógeno/fisiología , Nodularia/metabolismo , Océanos y Mares , Fosfatos/farmacocinética
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