Interactions of microorganisms with polymer nanocomposite surfaces containing oxidized carbon nanotubes.

In many environmental scenarios, the fate and impact of polymer nanocomposites (PNCs) that contain carbon nanotubes (CNT/PNCs) will be influenced by their interactions with microorganisms, with implications for antimicrobial properties and the long-term persistence of PNCs. Using oxidized single-wall (O-SWCNTs) and multi-wall CNTs (O-MWCNTs), we explored the influence that CNT loading (mass fraction≤0.1%-10%) and type have on the initial interactions of Pseudomonas aeruginosa with O-CNT/poly(vinyl alcohol) (PVOH) nanocomposites containing well-dispersed O-CNTs. LIVE/DEAD staining revealed that, despite oxidation, the inclusion of O-SWCNTs or O-MWCNTs caused PNC surfaces to exhibit antimicrobial properties. The fraction of living cells deposited on both O-SWCNT and O-MWCNT/PNC surfaces decreased exponentially with increasing CNT loading, with O-SWCNTs being approximately three times more cytotoxic on a % w/w basis. Although not every contact event between attached microorganisms and CNTs led to cell death, the cytotoxicity of the CNT/PNC surfaces scaled with the total contact area that existed between the microorganisms and CNTs. However, because the antimicrobial properties of CNT/PNC surfaces require direct CNT-microbe contact, dead cells were able to shield living cells from the cytotoxic effects of CNTs, allowing biofilm formation to occur on CNT/PNCs exposed to Pseudomonas aeruginosa for longer time periods.

Bioremediation of organic compounds--putting microbial metabolism to work.

Microorganisms can metabolize many aliphatic and aromatic organic contaminants, either to obtain carbon and/or energy for growth, or as co-substrates, thus converting them to products such as carbon dioxide, water, chloride and biomass. These biotransformations can be exploited for treatment of contaminated soils and ground water.

Biotreatment of PAH-contaminated soils/sediments.

The importance of chemical conditions and mass transfer effects to in situ bioremediation of PAHs is presented using a case study. In situ bioremediation is being evaluated as a means for remediating a coal-tar contaminated aquifer at the site of a former manufactured gas plant. Two objectives of this work have been to evaluate the potential for the indigenous bacteria to biodegrade coal tar constituents and to identify factors controlling biodegradation rates. Aquifer sediments collected from a variety of locations across the site contain bacteria capable of aerobically mineralizing some of the principal aromatic compounds in the groundwater plume (benzene, naphthalene, and phenanthrene). Parallel mineralization assays incubated under aerobic and anaerobic conditions strongly suggest that O2 availability is a primary factor controlling the rate and extent of biodegradation. Data indicate that sorption may have also significantly affected biodegradation rates by limiting the bioavailability of the aromatic compounds. A mass transfer-limited numerical model was developed to explore the effect of sorption and bioavailability on biodegradation rates. In this model biodegradation rates are proportional to aqueous concentration, which is directly reduced by sorption. Both biotransformation and bacterial growth are described as being controlled by the rate of desorptive mass transfer. The influence of sorption on biodegradation is quantified by defining a Bioavailability Factor, Bf. A Thiele Modulus which indicates the ratio of characteristic times for sorption and biodegradation is helpful for determining the extent of mass transfer control during biodegradation of the aromatic compounds. This approach is preferred to equilibrium partitioning models, which may overestimate biodegradation rates by failing to consider the effect of rate-limited desorption on bioavailability.

Non-steady state simulation of BOM removal in drinking water biofilters: model development.

A numerical model was developed to simulate the non-steady-state behavior of biologically-active filters used for drinking water treatment. The biofilter simulation model called "BIOFILT" simulates the substrate (biodegradable organic matter or BOM) and biomass (both attached and suspended) profiles in a biofilter as a function of time. One of the innovative features of BIOFILT compared to previous biofilm models is the ability to simulate the effects of a sudden loss in attached biomass or biofilm due to filter backwash on substrate removal performance. A sensitivity analysis of the model input parameters indicated that the model simulations were most sensitive to the values of parameters that controlled substrate degradation and biofilm growth and accumulation including the substrate diffusion coefficient, the maximum rate of substrate degradation, the microbial yield coefficient, and a dimensionless shear loss coefficient. Variation of the hydraulic loading rate or other parameters that controlled the deposition of biomass via filtration did not significantly impact the simulation results.

Non-steady state simulation of BOM removal in drinking water biofilters: applications and full-scale validation.

A biofilter model called "BIOFILT" was used to simulate the removal of biodegradable organic matter (BOM) in full-scale biofilters subjected to a wide range of operating conditions. Parameters that were varied included BOM composition, water temperature (3.0-22.5 degrees C), and biomass removal during backwashing (0-100%). Results from biofilter simulations suggest a strong dependence of BOM removal on BOM composition. BOM with a greater diffusivity or with faster degradation kinetics was removed to a greater extent and also contributed to shorter biofilter start-up times. In addition, in simulations involving mixtures of BOM (i.e. readily degradable and slowly degradable components), the presence of readily degradable substrate significantly enhanced the removal of slowly degradable material primarily due to the ability to maintain greater biomass levels in the biofilters. Declines in pseudo-steady state BOM removal were observed as temperature was decreased from 22.5 to 3 degrees C and the magnitude of the change was significantly affected by BOM composition. However, significant removals of BOM are possible at low temperatures (3-6 degrees C). Concerning the impact of backwashing on biofilter performance, BOM removal was not affected by backwash resulting in biomass removals of 60% or less. This suggests that periodic backwashing should not significantly impact biofilter performance as observed biomass removals from full-scale biofilters were negligible. In general, the simulation results were in good qualitative and quantitative agreement with experimental results obtained from full-scale biofilters.

Effects of 2-bromoethanesulfonic Acid and 2- chloroethanesulfonic Acid on acetate utilization in a continuous-flow methanogenic fixed-film column.

2-Bromoethanesulfonic acid (BESA) and 2-chloroethanesulfonic acid (CESA) have been reported to be potent inhibitors of methane formation during methanogenic decomposition in batch cultures. However, in a laboratory-scale continuous-flow methanogenic fixed-film column containing a predominance of acetate-decarboxylating methanogens, BESA at 6 x 10 M produced only a 41% inhibition of acetate utilization, and CESA at 5.4 x 10 M produced a 37% inhibition of acetate utilization. BESA and CESA concentrations were not monitored in the effluent, so their fate is unknown. The organisms in the column were capable of degrading trace halogenated aliphatic compounds ( approximately 30 mug/liter) with acetate (100 mg/liter) as the primary substrate. Previous exposure of the cells to halogenated organic compounds may have conferred resistance to BESA and CESA. Degradation of the inhibitor compounds is another possible explanation for the observed effects.

Transformations of halogenated organic compounds under denitrification conditions.

Trihalomethanes, carbon tetrachloride, 1,1,1-trichloroethane, 1,2-dibromoethane, chlorinated benzenes, ethylbenzene, and naphthalene at concentrations commonly found in surface and groundwater were incubated under anoxic conditions to study their transformability in the presence of denitrifying bacteria. None of the aromatic compounds showed significant utilization relative to sterile controls at initial concentrations from 41 to 114 micrograms/liter after 11 weeks of incubation. Of the halogenated aliphatic compounds studied, transformations of carbon tetrachloride and brominated trihalomethanes were observed after 8 weeks in batch denitrification cultures. Carbon from the decomposition of carbon tetrachloride was both assimilated into cell material and mineralized to carbon dioxide. How this was possible remains unexplained, since carbon tetrachloride is transformed to CO2 by hydrolysis and not by oxidation-reduction. Chloroform was detected in bacterial cultures with carbon tetrachloride initially present, indicating that reductive dechlorination had occurred in addition to hydrolysis. The data suggest that transformations of certain halogenated aliphatic compounds are likely to occur under denitrification conditions in the environment.

Transformations of 1- and 2-carbon halogenated aliphatic organic compounds under methanogenic conditions.

Several 1- and 2-carbon halogenated aliphatic organic compounds present at low concentrations (less than 100 micrograms/liter) were degraded under methanogenic conditions in batch bacterial cultures and in a continuous-flow methanogenic fixed-film laboratory-scale column. Greater than 90% degradation was observed within a 2-day detention time under continuous-flow methanogenic conditions with acetate as a primary substrate. Carbon-14 measurements indicated that chloroform, carbon tetrachloride, and 1,2-dichloroethane were almost completely oxidized to carbon dioxide, confirming removal by biooxidation. The initial step in the transformations of tetrachloroethylene and 1,1,2,2-tetrachloroethane to nonchlorinated end products appeared to be reductive dechlorination to trichloroethylene and 1,1,2-trichloroethane, respectively. Transformations of the brominated aliphatic compounds appear to be the result of both biological and chemical processes. The data suggest that transformations of halogenated aliphatic compounds can occur under methanogenic conditions in the environment.

Biodegradation of aromatic compounds under mixed oxygen/denitrifying conditions: a review.

Bioremediation of aromatic hydrocarbons in groundwater and sediments is often limited by dissolved oxygen. Many aromatic hydrocarbons degrade very slowly or not at all under anaerobic conditions. Nitrate is a good alternative electron acceptor to oxygen, and denitrifying bacteria are commonly found in the subsurface and in association with contaminated aquifer materials. Providing both nitrate and microaerophilic levels of oxygen may result in oxidation of the stable benzene rings in aromatic contaminants and allow for the intermediates of this oxidation to degrade via denitrification. The effects of using mixed electron acceptors on biodegradation of subsurface contaminants is unclear. Below some critical oxygen threshold, aerobic biodegradation is inhibited, however high levels of oxygen inhibit denitrification. The mechanisms which regulate electron transfer to oxygen and nitrate are complex. This review: 1) describes the factors which may affect the utilization of oxygen and nitrate as dual electron acceptors during biodegradation; 2) summarizes the incidence of dual use of nitrate and oxygen (aerobic denitrification); and 3) presents evidence of the effectiveness of bioremediation under mixed oxygen/nitrate conditions.

Ethylene dibromide transformation under methanogenic conditions.

Ethylene dibromide present at a low concentration (less than 100 micrograms/liter) was transformed by reductive dehalogenation under methanogenic conditions in batch bacterial cultures and in a continuous-flow, methanogenic, fixed-film, laboratory-scale column.

Utilization rates of trace halogenated organic compounds in acetate-grown biofilms.

Trace concentrations of chlorinated benzenes and chlorinated aliphatics were biotransformed by acetate-supported biofilms, the former under aerobic conditions and the latter under methanogenic conditions. The rates of transformation of the halogenated organic compounds (secondary substrates) differed from that of acetate, the primary substrate; some were higher, some were lower, and some were similar. Factors affecting the relative rates of utilization in multisubstrate systems are not known.

Transport issues and bioremediation modeling for the in situ aerobic co-metabolism of chlorinated solvents.

For aerobic co-metabolism of chlorinated solvents to occur, it is necessary that oxygen, a primary substrate, and the chlorinated compound all be available to an appropriate microorganism--that is, a microorganism capable of producing the nonspecific enzyme that will promote degradation of the contaminant while the primary substrate is aerobically metabolized. Thus, the transport processes that serve to mix the reactants are crucial in determining the rate and extent of biodegradation, particularly when considering in situ biodegradation. These transport processes intersect, at a range of scales, with the biochemical reactions. This paper reviews how the important processes contributing to aerobic co-metabolism of chlorinated solvents at different scales can be integrated into mathematical models. The application of these models to field-scale bioremediation is critically examined. It is demonstrated that modeling can be a useful tool in gaining insight into the physical, chemical, and biological processes relevant to aerobic co-metabolism, designing aerobic co-metabolic bioremediation systems, and predicting system performance. Research needs are identified that primarily relate to gaps in our current knowledge of inter-scale interactions.

Bacterial Adhesion under Static and Dynamic Conditions.

The deposition of various pseudomonads and coryneform bacteria with different hydrophobicities (water contact angles) and negative cell surface charges on negatively charged Teflon and glass surfaces was investigated. The levels of deposition varied between 5.0 x 10 and 1.6 x 10 cells cm and between 5.0 x 10 and 3.6 x 10 cells cm for dynamic column and static batch systems, respectively, indicating that there was a wide variation in physicochemical interactions. Batch and column results were compared in order to better distinguish between hydrodynamic and other system-dependent influences and method-independent physicochemical interactions. Despite the shorter suspension-solid contact time in columns (1 h) than in batch systems (4 h), the level of deposition (expressed as the number of cells that adhered) divided by the applied ambient cell concentration was 4.12 +/- 1.63 times higher in columns than in batch sytems for 15 of 22 strain-surface combinations studied. This demonstrates that transport of microbial particles from bulk liquid to surfaces is more efficient in dynamic columns (transport dominated by convection and diffusion) than in static batch systems (transport by diffusion only). The relative constancy of this ratio for the 15 combinations shows that physicochemical interactions affect adhesion similarly in the two systems. The deviating deposition behavior of the other seven strain-surface combinations could be attributed to method-dependent effects resulting from specific cell characteristics (e.g., to the presence of capsular polymers, to an ability to aggregate, to large cell sizes, or to a tendency to desorb after passage through an air-liquid interface).

Hydrogen transfer between methanogens and fermentative heterotrophs in hyperthermophilic cocultures.

Interactions involving hydrogen transfer were studied in a coculture of two hyperthermophilic microorganisms: Thermotoga maritima, an anaerobic heterotroph, and Methanococcus jannaschii, a hydrogenotrophic methanogen. Cell densities of T. maritima increased 10-fold when cocultured with M. jannaschii at 85 degrees C, and the methanogen was able to grow in the absence of externally supplied H(2) and CO(2). The coculture could not be established if the two organisms were physically separated by a dialysis membrane, suggesting the importance of spatial proximity. The significance of spatial proximity was also supported by cell cytometry, where the methanogen was only found in cell sorts at or above 4.5 microm in samples of the coculture in exponential phase. An unstructured mathematical model was used to compare the influence of hydrogen transport and metabolic properties on mesophilic and hyperthermophilic cocultures. Calculations suggest the increases in methanogenesis rates with temperature result from greater interactions between the methanogenic and fermentative organisms, as evidenced by the sharp decline in H(2) concentration in the proximity of a hyperthermophilic methanogen. The experimental and modeling results presented here illustrate the need to consider the interactions within hyperthermophilic consortia when choosing isolation strategies and evaluating biotransformations at elevated temperatures.

Succession of phenotypic, genotypic, and metabolic community characteristics during in vitro bioslurry treatment of polycyclic aromatic hydrocarbon-contaminated sediments.

Dredged harbor sediment contaminated with polycyclic aromatic hydrocarbons (PAHs) was removed from the Milwaukee Confined Disposal Facility and examined for in situ biodegradative capacity. Molecular techniques were used to determine the successional characteristics of the indigenous microbiota during a 4-month bioslurry evaluation. Ester-linked phospholipid fatty acids (PLFA), multiplex PCR of targeted genes, and radiorespirometry techniques were used to define in situ microbial phenotypic, genotypic, and metabolic responses, respectively. Soxhlet extractions revealed a loss in total PAH concentrations of 52%. Individual PAHs showed reductions as great as 75% (i.e., acenapthene and fluorene). Rates of (14)C-PAH mineralization (percent/day) were greatest for phenanthrene, followed by pyrene and then chrysene. There was no mineralization capacity for benzo[a]pyrene. Ester-linked phospholipid fatty acid analysis revealed a threefold increase in total microbial biomass and a dynamic microbial community composition that showed a strong correlation with observed changes in the PAH chemistry (canonical r(2) of 0.999). Nucleic acid analyses showed copies of genes encoding PAH-degrading enzymes (extradiol dioxygenases, hydroxylases, and meta-cleavage enzymes) to increase by as much as 4 orders of magnitude. Shifts in gene copy numbers showed strong correlations with shifts in specific subsets of the extant microbial community. Specifically, declines in the concentrations of three-ring PAH moieties (i.e., phenanthrene) correlated with PLFA indicative of certain gram-negative bacteria (i.e., Rhodococcus spp. and/or actinomycetes) and genes encoding for naphthalene-, biphenyl-, and catechol-2,3-dioxygenase degradative enzymes. The results of this study suggest that the intrinsic biodegradative potential of an environmental site can be derived from the polyphasic characterization of the in situ microbial community.