Reversible processes in collagen dehydration: A molecular dynamics study.

Collagen dehydration is an unavoidable damaging process that causes the lack of fibers' physical properties and it is usually irreversible. However, the identification of low hydration conditions that permit a recovering of initial collagen features after a rehydration treatment is particularly of interest. Monitoring structural changes by means of MD simulations, we investigated the hydration-dehydration-rehydration cycle of two microfibril models built on different fragments of the sequence of rat tail collagen type I. The microfibrils have different hydropathic features, to investigate the influence of amino acid composition on the whole process. We showed that with low hydration at a level corresponding to the first shell, microfibril gains in compactness and tubularity. Crucially, some water molecules remain trapped inside the fibrils, allowing, by rehydrating, a recovery of the initial collagen structural features. Water rearranges in cluster around the protein, and its first layer is more anchored to the surface. However, these changes in distribution and mobility in low hydration conditions get back with rehydration.

Hydration-controlled anisotropic and giant permittivity in TEG-functionalized eumelanin.

Although it has long been known that the peculiar electronic-ionic conductor behavior of eumelanin is critically dependent on hydration, the detailed mechanisms by which water-polymer interactions control and affect the conduction properties have remained largely obscure. In this paper, we report a remarkable anisotropy and giant polarization effect in a synthetic eumelanin (TEGMe) chemically functionalized with hydrophilic TEG residues. FT-IR analyses of water sorption isotherms and AC measurements were consistent with a microporous structure binding or hosting mainly isolated water molecules. In contrast, similar experiments on a commercial synthetic eumelanin (AMe) used as a reference were suggestive of a bulk macroporous scaffold binding or hosting liquid water. These data disclosed for the first time the differential impact on eumelanin conductivity of vapor, liquid and ice-like forms of water adsorbed onto or embedded into the polymer layer. It is thus demonstrated, for the first time, that hydration controls the conduction properties of eumelanin in a more complex manner than is commonly believed, involving, besides the reported semiquinone comproportionation equilibria, the mode of interaction of water molecules as governed by both the chemical and morphological features of the polymer.

Insight on collagen self-assembly mechanisms by coupling molecular dynamics and UV spectroscopy techniques.

Self-assembly of rat tail collagen type I was investigated by means of turbidity measurements and molecular dynamics simulations. Turbidity curves collected at different pH values show that the rate of aggregation was not linear in dependence from pH, with the fastest kinetics at pH 5.0 and the lowest at neutral pH. MD simulations were carried out on two regions with different hydropathicity, monitoring the aggregation of up to four staggered tropocollagen fragments at different ionic strength. At physiological conditions, association of lowly charged regions occurs more easily than for highly charged ones, the latter seeming to aggregate in a sequential way. The first contacts indicate for both regions that the driving force is hydrophobic, the electrostatic contribution becoming relevant at short distance. The direct inter-tropocollagen H-bonds confirm that fibrillogenesis is driven by loss of surface water from the monomers and involves in large percentage hydroxyproline residues. Low ionic strength dynamics leads to the formation of incorrect assemblies, driven by not shielded pairwise charge interactions.

Synthesis, Structure Characterization, and Evaluation in Microglia Cultures of Neuromelanin Analogues Suitable for Modeling Parkinson's Disease.

In the substantia nigra of human brain, neuromelanin (NM) released by degenerating neurons can activate microglia with consequent neurodegeneration, typical of Parkinson's disease (PD). Synthetic analogues of NM were prepared to develop a PD model reproducing the neuropathological conditions of the disease. Soluble melanin-protein conjugates were obtained by melanization of fibrillated ß-lactoglobulin (fLG). The melanic portion of the conjugates contains either eumelanic (EufLG) or mixed eumelanic/pheomelanic composition (PheofLG), the latter better simulating natural NMs. In addition, the conjugates can be loaded with controlled amounts of iron. Upon melanization, PheofLG-Fe conjugates maintain the amyloid cross-ß protein core as the only structurally organized element, similarly to human NMs. The similarity in composition and structural organization with the natural pigment is reflected by the ability of synthetic NMs to activate microglia, showing potential of the novel conjugates to model NM induced neuroinflammation. Thus, synthetic NM/microglia constitute a new model to develop anti-Parkinson drugs.

Infrared and water sorption studies of the hydration structure and mechanism in natural and synthetic melanin.

Although water is a structural and functional determinant in melanins, a direct study of the interaction between water and melanin is still lacking and is the subject of the present work. Melanin forms in cells and organisms' colloidal particles deriving from the hierarchical aggregation of smaller subunits such as protomolecules, stacking units, and small aggregates: its functions must be interpreted in terms of solid-state and surface properties. They are strictly connected to the porosity of the particles when they interact with water and other chemicals. The structural characteristics of water sorbed in the pores are investigated by means of FTIR in the OH stretching vibration region (4000-3000 cm(-1)) on Sepia and synthetic l-Dopa melanins at different and controlled hydration degrees (a(w) = 0.06 to 0.92). Three distinct component bands are recognized in the main OH stretching band, corresponding to three distinct water populations, showing differing behavior for the two kinds of melanin and thus accounting for different molecular structures. On this basis, the historical, albeit current, model of hydration structure of melanin granules, a "strongly" and a "weakly" bound fraction, is reassessed and rediscussed.