GPU implementation for spline-based wavefront reconstruction.

This paper presents an adaptation of the distributed-spline-based aberration reconstruction method for Shack-Hartmann (SH) slope measurements to extremely large-scale adaptive optics systems and the execution on graphics processing units (GPUs). The introduction of a hierarchical multi-level scheme for the elimination of piston offsets between the locally computed wavefront (WF) estimates solves the piston error propagation observed for a large number of partitions with the original version. To obtain a fully distributed method for WF correction, the projection of the phase estimates is locally approximated and applied in a distributed fashion, providing stable results for low and medium actuator coupling. An implementation of the method with the parallel computing platform CUDA exploits the inherently distributed nature of the algorithm. With a standard off-the-shelf GPU, the computation of the adaptive optics correction updates is accomplished in under 1 ms for the benchmark case of a 200×200 SH array.

Nonlinear spline wavefront reconstruction from Shack-Hartmann intensity measurements through small aberration approximations.

We propose an extension of the Spline based ABerration Reconstruction (SABRE) method to Shack-Hartmann (SH) intensity measurements, through small aberration approximations of the focal spot models. The original SABRE for SH slope measurements is restricted to the use of linear spline polynomials, due to the limited amount of data, and the resolution of its reconstruction is determined by the number of lenslets. In this work, a fast algorithm is presented that directly processes the pixel information of the focal spots, allowing the employment of nonlinear polynomials for high accuracy reconstruction. In order to guarantee the validity of the small aberration approximations, the method is applied in two correction steps, with a first compensation of large, low-order aberrations through the gradient-based linear SABRE followed by compensation of the remaining high-order aberrations with the intensity-based nonlinear SABRE.

On distributed wavefront reconstruction for large-scale adaptive optics systems.

The distributed-spline-based aberration reconstruction (D-SABRE) method is proposed for distributed wavefront reconstruction with applications to large-scale adaptive optics systems. D-SABRE decomposes the wavefront sensor domain into any number of partitions and solves a local wavefront reconstruction problem on each partition using multivariate splines. D-SABRE accuracy is within 1% of a global approach with a speedup that scales quadratically with the number of partitions. The D-SABRE is compared to the distributed cumulative reconstruction (CuRe-D) method in open-loop and closed-loop simulations using the YAO adaptive optics simulation tool. D-SABRE accuracy exceeds CuRe-D for low levels of decomposition, and D-SABRE proved to be more robust to variations in the loop gain.

Computational performance comparison of wavefront reconstruction algorithms for the European Extremely Large Telescope on multi-CPU architecture.

The European Southern Observatory (ESO) is studying the next generation giant telescope, called the European Extremely Large Telescope (E-ELT). With a 42 m diameter primary mirror, it is a significant step from currently existing telescopes. Therefore, the E-ELT with its instruments poses new challenges in terms of cost and computational complexity for the control system, including its adaptive optics (AO). Since the conventional matrix-vector multiplication (MVM) method successfully used so far for AO wavefront reconstruction cannot be efficiently scaled to the size of the AO systems on the E-ELT, faster algorithms are needed. Among those recently developed wavefront reconstruction algorithms, three are studied in this paper from the point of view of design, implementation, and absolute speed on three multicore multi-CPU platforms. We focus on a single-conjugate AO system for the E-ELT. The algorithms are the MVM, the Fourier transform reconstructor (FTR), and the fractal iterative method (FRiM). This study enhances the scaling of these algorithms with an increasing number of CPUs involved in the computation. We discuss implementation strategies, depending on various CPU architecture constraints, and we present the first quantitative execution times so far at the E-ELT scale. MVM suffers from a large computational burden, making the current computing platform undersized to reach timings short enough for AO wavefront reconstruction. In our study, the FTR provides currently the fastest reconstruction. FRiM is a recently developed algorithm, and several strategies are investigated and presented here in order to implement it for real-time AO wavefront reconstruction, and to optimize its execution time. The difficulty to parallelize the algorithm in such architecture is enhanced. We also show that FRiM can provide interesting scalability using a sparse matrix approach.

Queen pheromones in Temnothorax ants: control or honest signal?

BACKGROUND: The division of reproductive labor among group members in insect societies is regulated by "queen pheromones". However, it remains controversial whether these are manipulative, i.e., actively suppress worker reproduction, or honestly signal the fertility status of the queen to which workers react in their own interest by refraining from laying eggs. Manipulative queen control is thought to lead to an evolutionary arms race between queens and workers, resulting in complex queen bouquets that diverge strongly among different populations and species. In contrast, honest signals would evolve more slowly and might therefore differ less strongly within and among species. RESULTS: We aimed at determining the tempo of the evolution of queen signals in two ways. First, we investigated whether queens of Temnothorax ants are capable of controlling egg laying by workers of their own, closely, and distantly related species. Second, we compared the species- and caste-specific patterns of cuticular hydrocarbons, which are assumed to convey information on reproductive status. In mixed-species colonies, queens were not able to fully suppress egg-laying and male production by workers of unrelated species, while workers did not reproduce under the influence of a queen from their own species. Furthermore, the chemical profiles differed more strongly among queens of different species than among the respective workers. CONCLUSIONS: Our results suggest that cuticular hydrocarbons associated with fecundity are not fully conserved in evolution and evolve slightly faster than worker-specific components in the blend of cuticular hydrocarbons. While this higher rate of evolution might reflect an arms race between queens and workers, the observation that workers still respond to the presence of a queen from another species support the honest signal hypothesis. Future studies need to examine alternative explanations for a higher rate of evolution of queen-specific substances, such as an involvement of such compounds in mating.

Policing effectiveness depends on relatedness and group size.

Cohesion of social groups requires the suppression of individual selfishness. Indeed, worker egg laying in insect societies is usually suppressed or punished through aggression and egg removal. The effectiveness of such "policing" is expected to increase with decreasing relatedness, as inclusive fitness of group members is more strongly affected by selfish worker reproduction when group members are less closely related to each other. As inclusive fitness is also influenced by the costs and benefits of helping, the effectiveness of policing should decrease with increasing colony size, because the costs for the whole colony from selfish worker reproduction are proportionally reduced in large groups. Here, we show that policing effectiveness in colonies of the ant Temnothorax unifasciatus is low in large groups and high in small groups when relatedness is high. When we experimentally decreased the relatedness in groups, the policing effectiveness reached the same high level as in small, highly related groups, irrespective of group size. Therefore, our results indicate that policing effectiveness is simultaneously shaped by relatedness and group size, that is, an ecological factor. This may have major implications for testing policing across species of animals.

Retinal adaptive optics imaging with a pyramid wavefront sensor.

The pyramid wavefront sensor (P-WFS) has replaced the Shack-Hartmann (SH-) WFS as the sensor of choice for high-performance adaptive optics (AO) systems in astronomy. Many advantages of the P-WFS, such as its adjustable pupil sampling and superior sensitivity, are potentially of great benefit for AO-supported imaging in ophthalmology as well. However, so far no high quality ophthalmic AO imaging was achieved using this novel sensor. Usually, a P-WFS requires modulation and high precision optics that lead to high complexity and costs of the sensor. These factors limit the competitiveness of the P-WFS with respect to other WFS devices for AO correction in visual science. Here, we present a cost-effective realization of AO correction with a non-modulated P-WFS based on standard components and apply this technique to human retinal in vivo imaging using optical coherence tomography (OCT). P-WFS based high quality AO imaging was successfully performed in 5 healthy subjects and smallest retinal cells such as central foveal cone photoreceptors are visualized. The robustness and versatility of the sensor is demonstrated in the model eye under various conditions and in vivo by high-resolution imaging of other structures in the retina using standard and extended fields of view. As a quality benchmark, the performance of conventional SH-WFS based AO was used and successfully met. This work may trigger a paradigm shift with respect to the wavefront sensor of choice for AO in ophthalmic imaging.

Visualizing human photoreceptor and retinal pigment epithelium cell mosaics in a single volume scan over an extended field of view with adaptive optics optical coherence tomography.

Using adaptive optics optical coherence tomography, human photoreceptors and retinal pigment epithelium (RPE) cells are typically visualized on a small field of view of ∼1° to 2°. In addition, volume averaging is required for visualizing the RPE cell mosaic. To increase the imaging area, we introduce a lens based spectral domain AO-OCT system that shows low aberrations within an extended imaging area of 4°×4° while maintaining a high (theoretical) transverse resolution (at >7 mm pupil diameter) in the order of 2 µm. A new concept for wavefront sensing is introduced that uses light mainly originating from the RPE layer and yields images of the RPE cell mosaic in a single volume acquisition. The capability of the instrument for in vivo imaging is demonstrated by visualizing various cell structures within the posterior retinal layers over an extended field of view.

Chemical correlates of reproduction and worker policing in a myrmicine ant.

In a number of wasps, bees, and in particular ponerine ants, quantitative and qualitative variation in the profile of cuticular hydrocarbons is associated with variation in fecundity and is likely to serve for communicating the reproductive status of an individual. Here, we demonstrate that the chemical profile on the cuticle of fertile workers and queens of the myrmicine ant Temnothorax unifasciatus is different from that of non-reproductive workers. Fertility and apparently also cuticular signatures are reversible under the influence of policing by worker aggression. Though no policing by egg-eating occurs in this species, queen and worker laid eggs also differed in their chemical profile.

Reproductive conflict in social insects: male production by workers in a slave-making ant.

In insect societies, workers cooperate but may also pursue their individual interests, such as laying viable male eggs. The case of obligatory slave-making ants is of particular interest because workers do not engage in maintenance activities and foraging. Therefore, worker egg laying is expected to be less detrimental for colony efficiency than in related, nonparasitic species. Furthermore, as slave-making workers usually do not perform brood care and thus might have little power in manipulating sex allocation, they might be more strongly selected to increase their direct fitness by producing their own sons than workers in nonparasitic species. In this study we investigated worker reproduction in four natural colonies of the slave-making ant Polyergus rufescens, using highly variable microsatellite markers. Our results show that workers produce up to 100% of the males. This study thus presents the first direct evidence of an almost complete takeover of male reproduction by workers in ants.

Everolimus's influence on persistent acute rejection after experimental lung transplantation.

BACKGROUND: In lung transplantation, acute rejection episodes increase the risk of chronic rejection. Therefore treatment of acute rejection needs to be optimized for better long-term outcome of lung-transplantation and patient survival. OBJECTIVES: The aim was to verify whether an inhibitor of the mammalian target of rapamycin (Everolimus) contained the extent of persistent acute rejection after left lung allo-transplantation in rats. MATERIAL AND METHODS: Rats (F344-to-WKY) with a high grade of acute rejection were treated with methylprednisolone (10mg/kg, postoperative days 14-16) alone or in combination with everolimus (2.5 mg/kg, postoperative days 14-30). The rats were killed on postoperative day 20 and 30. Infiltration of inflammatory cells (ED1, CD11a, CD18) and activation of endothelial cells (ICAM-1) were measured by immunohistochemistry RESULTS: Everolimus treatment significantly reduced the number of ICAM-1 positive small vessels (66%; p<0.05) and suppressed the infiltration of leucocytes (CD11a (64%), CD18 (42%); p<0.05) and macrophages (ED1; 22%) in the allografts on POD 30. Despite this clear anti-inflammatory effects, lung allografts still showed severe acute vascular rejection in combination with high grade small airway inflammation. CONCLUSIONS: The shown anti-inflammatory effects of Everolimus could not delay the progression of acute rejection in rat lung allografts.

Suppression of bronchiolitis obliterans in allogeneic rat lung transplantation--effectiveness of everolimus.

BACKGROUND: Chronic rejection (CR) after lung transplantation (LTX) manifests pathologically by fibrotic airway remodelling and bronchiolitis obliterans (BO). The role of the mammalian target of rapamycin inhibitor everolimus in preventing this process is poorly understood. METHODS: A rat model of left lung allo-transplantation (Fisher 344 to Wistar Kyoto) was used to analyze the effect of everolimus (2.5 mg/kg/day) on the development of CR. Drug therapy began on postoperative day (POD) 0, 7 and 14 characterizing different grade of acute rejection (AR) of the allograft before drug treatment. RESULTS: Non-treated recipients developed severe acute rejection (AR) and first signs of CR on POD 20 and a pronounced CR on POD 60. On POD 20, only application of everolimus from POD 0 to 60 significantly reduced acute inflammatory infiltration (p<0.001). Independent of treatment scheme, everolimus suppressed the development of early signs of chronic alterations (POD 20). However, neither early (POD 7-60) nor late (POD 14-60) application of everolimus affected the progression of CR (POD 60). Only its initial treatment (POD 0-60) inhibited the development of BO and vasculopathy (p<0.001). An additional finding was a decrease in body weight after drug application. CONCLUSION: The effectiveness of everolimus after rat LTX depended on the grade of inflammation of the allograft before initiation of drug treatment. Only allografts with no or low grade AR benefit from long-term treatment with everolilmus in the prevention of BO after LTX. It could be speculated that conversion to an everolimus-based immunosuppression after LTX might only be successful in patients free of BO.

Cuticular hydrocarbons in two parapatric species of ants and their hybrid.

Discrimination between nestmates and non-nestmates in social insects is thought to rely on the pattern of cuticular hydrocarbons. We investigated the cuticular hydrocarbon profiles of 2 parapatric sibling ant species, Temnothorax nylanderi (Förster, 1850) and Temnothorax crassispinus (Karavaiev, 1926), and their hybrid. We found that although the profiles show considerable similarities, a discriminant analysis based on the relative peak areas of cuticular hydrocarbons separates the 3 taxa. The profiles of hybrids were not consistently intermediate between those of the paternal species, suggesting either non-additive interactions among the parental biosynthetic pathways or systematic differences in environment-derived odor cues.

Knowing your enemies: seasonal dynamics of host-social parasite recognition.

Despite its evolutionary significance, behavioural flexibility of social response has rarely been investigated in insects. We studied a host-social parasite system: the slave-making ant Polyergus rufescens and its host Formica rufibarbis. Free-living host workers from parasitized and from unparasitized areas were compared in their level of aggression against the parasite and alien conspecifics. We expected that a seasonal change would occur in the acceptance threshold of F. rufibarbis workers from a parasitized area towards the parasite, whereas F. rufibarbis workers from an unparasitized area would not show substantial changes connected with the parasite's peak in activity (raiding and colony-founding season). The results showed a significant adaptive behavioural flexibility of host species workers and are consistent with the acceptance threshold model's (Reeve 1989) prediction that recognition systems are not fixed but context-dependent. In particular, host workers from the unparasitized area were highly aggressive towards the parasite regardless of the season, whereas host workers from the parasitized area significantly increased their aggression towards the parasite during its raiding and colony-founding season. Being able to detect and possibly kill a Polyergus scout searching for host nests can be an effective strategy for a Formica colony to avoid being raided or usurped by a parasite queen.