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1.

Phylogenomics and the rise of the angiosperms.

Zuntini, Alexandre R; Carruthers, Tom; Maurin, Olivier; Bailey, Paul C; Leempoel, Kevin; Brewer, Grace E; Epitawalage, Niroshini; Françoso, Elaine; Gallego-Paramo, Berta; McGinnie, Catherine; Negrão, Raquel; Roy, Shyamali R; Simpson, Lalita; Toledo Romero, Eduardo; Barber, Vanessa M A; Botigué, Laura; Clarkson, James J; Cowan, Robyn S; Dodsworth, Steven; Johnson, Matthew G; Kim, Jan T; Pokorny, Lisa; Wickett, Norman J; Antar, Guilherme M; DeBolt, Lucinda; Gutierrez, Karime; Hendriks, Kasper P; Hoewener, Alina; Hu, Ai-Qun; Joyce, Elizabeth M; Kikuchi, Izai A B S; Larridon, Isabel; Larson, Drew A; de Lírio, Elton John; Liu, Jing-Xia; Malakasi, Panagiota; Przelomska, Natalia A S; Shah, Toral; Viruel, Juan; Allnutt, Theodore R; Ameka, Gabriel K; Andrew, Rose L; Appelhans, Marc S; Arista, Montserrat; Ariza, María Jesús; Arroyo, Juan; Arthan, Watchara; Bachelier, Julien B; Bailey, C Donovan; Barnes, Helen F.

Nature; 629(8013): 843-850, 2024 May.

Artículo en Inglés | MEDLINE | ID: mdl-38658746

2.

Deconstructing age estimates for angiosperms.

Carruthers, Tom; Scotland, Robert W.

Mol Phylogenet Evol; 186: 107861, 2023 09.

Artículo en Inglés | MEDLINE | ID: mdl-37329931

3.

The Implications of Incongruence between Gene Tree and Species Tree Topologies for Divergence Time Estimation.

Carruthers, Tom; Sun, Miao; Baker, William J; Smith, Stephen A; de Vos, Jurriaan M; Eiserhardt, Wolf L.

Syst Biol; 71(5): 1124-1146, 2022 08 10.

Artículo en Inglés | MEDLINE | ID: mdl-35167690

4.

Species as a Heuristic: Reconciling Theory and Practice.

Wells, Tom; Carruthers, Tom; Muñoz-Rodríguez, Pablo; Sumadijaya, Alex; Wood, John R I; Scotland, Robert W.

Syst Biol; 71(5): 1233-1243, 2022 08 10.

Artículo en Inglés | MEDLINE | ID: mdl-34672346

5.

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life.

Baker, William J; Bailey, Paul; Barber, Vanessa; Barker, Abigail; Bellot, Sidonie; Bishop, David; Botigué, Laura R; Brewer, Grace; Carruthers, Tom; Clarkson, James J; Cook, Jeffrey; Cowan, Robyn S; Dodsworth, Steven; Epitawalage, Niroshini; Françoso, Elaine; Gallego, Berta; Johnson, Matthew G; Kim, Jan T; Leempoel, Kevin; Maurin, Olivier; Mcginnie, Catherine; Pokorny, Lisa; Roy, Shyamali; Stone, Malcolm; Toledo, Eduardo; Wickett, Norman J; Zuntini, Alexandre R; Eiserhardt, Wolf L; Kersey, Paul J; Leitch, Ilia J; Forest, Félix.

Syst Biol; 71(2): 301-319, 2022 02 10.

Artículo en Inglés | MEDLINE | ID: mdl-33983440

6.

Discovery and characterization of sweetpotato's closest tetraploid relative.

Muñoz-Rodríguez, Pablo; Wells, Tom; Wood, John R I; Carruthers, Tom; Anglin, Noelle L; Jarret, Robert L; Scotland, Robert W.

New Phytol; 234(4): 1185-1194, 2022 05.

Artículo en Inglés | MEDLINE | ID: mdl-35064679

7.

Uncertainty in Divergence Time Estimation.

Carruthers, Tom; Scotland, Robert W.

Syst Biol; 70(4): 855-861, 2021 06 16.

Artículo en Inglés | MEDLINE | ID: mdl-33313882

8.

The Implications of Interrelated Assumptions on Estimates of Divergence Times and Rates of Diversification.

Carruthers, Tom; Scotland, Robert W.

Syst Biol; 70(6): 1181-1199, 2021 10 13.

Artículo en Inglés | MEDLINE | ID: mdl-33760070

9.

Insights from Empirical Analyses and Simulations on Using Multiple Fossil Calibrations with Relaxed Clocks to Estimate Divergence Times.

Carruthers, Tom; Scotland, Robert W.

Mol Biol Evol; 37(5): 1508-1529, 2020 05 01.

Artículo en Inglés | MEDLINE | ID: mdl-31899514

10.

The Implications of Lineage-Specific Rates for Divergence Time Estimation.

Carruthers, Tom; Sanderson, Michael J; Scotland, Robert W.

Syst Biol; 69(4): 660-670, 2020 07 01.

Artículo en Inglés | MEDLINE | ID: mdl-31808929

11.

The temporal dynamics of evolutionary diversification in Ipomoea.

Carruthers, Tom; Muñoz-Rodríguez, Pablo; Wood, John R I; Scotland, Robert W.

Mol Phylogenet Evol; 146: 106768, 2020 05.

Artículo en Inglés | MEDLINE | ID: mdl-32081764

12.

Repeated upslope biome shifts in Saxifraga during late-Cenozoic climate cooling.

Carruthers, Tom; Moerland, Michelangelo S; Ebersbach, Jana; Favre, Adrien; Folk, Ryan A; Hawkins, Julie A; Muellner-Riehl, Alexandra N; Röser, Martin; Soltis, Douglas E; Tkach, Natalia; Baker, William J; de Vos, Jurriaan M; Eiserhardt, Wolf L.

Nat Commun; 15(1): 1100, 2024 Feb 06.

Artículo en Inglés | MEDLINE | ID: mdl-38321017

13.

exTREEmaTIME: a method for incorporating uncertainty into divergence time estimates.

Carruthers, Tom; Scotland, Robert W.

Biol Open; 11(2)2022 02 15.

Artículo en Inglés | MEDLINE | ID: mdl-35147180

14.

Heuristics, species, and the analysis of systematic data.

Wells, Tom; Carruthers, Tom; Scotland, Robert W.

Trends Plant Sci; 27(6): 524-527, 2022 06.

Artículo en Inglés | MEDLINE | ID: mdl-35450796

15.

Evolutionary Biology: A New Phylogenetic Framework for an Iconic Plant Radiation.

Carruthers, Tom; Muñoz-Rodríguez, Pablo; Scotland, Robert W.

Curr Biol; 30(24): R1473-R1476, 2020 12 21.

Artículo en Inglés | MEDLINE | ID: mdl-33352127

16.

A taxonomic monograph of Ipomoea integrated across phylogenetic scales.

Muñoz-Rodríguez, Pablo; Carruthers, Tom; Wood, John R I; Williams, Bethany R M; Weitemier, Kevin; Kronmiller, Brent; Goodwin, Zoë; Sumadijaya, Alex; Anglin, Noelle L; Filer, Denis; Harris, David; Rausher, Mark D; Kelly, Steven; Liston, Aaron; Scotland, Robert W.

Nat Plants; 5(11): 1136-1144, 2019 11.

Artículo en Inglés | MEDLINE | ID: mdl-31712754

17.

Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia.

Muñoz-Rodríguez, Pablo; Carruthers, Tom; Wood, John R I; Williams, Bethany R M; Weitemier, Kevin; Kronmiller, Brent; Ellis, David; Anglin, Noelle L; Longway, Lucas; Harris, Stephen A; Rausher, Mark D; Kelly, Steven; Liston, Aaron; Scotland, Robert W.

Curr Biol; 28(8): 1246-1256.e12, 2018 04 23.

Artículo en Inglés | MEDLINE | ID: mdl-29657119

18.

Atlantic bluefin tuna: a novel multistock spatial model for assessing population biomass.

Taylor, Nathan G; McAllister, Murdoch K; Lawson, Gareth L; Carruthers, Tom; Block, Barbara A.

PLoS One; 6(12): e27693, 2011.

Artículo en Inglés | MEDLINE | ID: mdl-22174745

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Phylogenomics and the rise of the angiosperms.

Deconstructing age estimates for angiosperms.

The Implications of Incongruence between Gene Tree and Species Tree Topologies for Divergence Time Estimation.

Species as a Heuristic: Reconciling Theory and Practice.

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life.

Discovery and characterization of sweetpotato's closest tetraploid relative.

Uncertainty in Divergence Time Estimation.

The Implications of Interrelated Assumptions on Estimates of Divergence Times and Rates of Diversification.

Insights from Empirical Analyses and Simulations on Using Multiple Fossil Calibrations with Relaxed Clocks to Estimate Divergence Times.

The Implications of Lineage-Specific Rates for Divergence Time Estimation.

The temporal dynamics of evolutionary diversification in Ipomoea.

Repeated upslope biome shifts in Saxifraga during late-Cenozoic climate cooling.

exTREEmaTIME: a method for incorporating uncertainty into divergence time estimates.

Heuristics, species, and the analysis of systematic data.

Evolutionary Biology: A New Phylogenetic Framework for an Iconic Plant Radiation.

A taxonomic monograph of Ipomoea integrated across phylogenetic scales.

Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia.

Atlantic bluefin tuna: a novel multistock spatial model for assessing population biomass.