Between a reactant rock and a solvent hard place--molecular corrals guide aromatic substitutions.

A novel reaction mechanism is presented for an ortho-magnesium carboxylate driven aromatic nucleophilic substitution in naphthoic acids, supported by high-level density functional theory. Results show that the rate-determining aspects involve an R-group transfer from a Grignard reagent Mg-atom to the C1-atom on a naphthalene ring. This transfer is moderated by a molecular corral comprised of two solvent THF molecules and the naphthoic acid, which collectively marshal the R-group into position. The CAM-B3LYP method was employed together with the all-electron DZVP basis set. Solvent was treated using an implicit dielectric continuum (PCM method) and IDSCRF atomic-radii. Further evolved solvent models were also investigated, consisting of explicit solvating particles forming a primary solvation layer framing the reaction center. Reaction barriers obtained are in close agreement with experimental trends, with R-group substituent-identity tempering repulsion with the molecular corral, in-turn modulating the free-energy barriers. Partitioning of the dynamic bases of entropy contribution to free-energy was central to the successful experimental-theoretical synergy.

Pd(OAc)2-catalyzed C-H activation/C-O cyclization: mechanism, role of oxidant-probed by density functional theory.

A series of density functional theory determinations have been carried out to characterize Pd(OAc)2-catalyzed C-H activation and subsequent intramolecular C-O bond-coupling of phenyl-tert-butanol in perfluorobenzene (C6F6) solvent. Full, nontruncated models of the real chemical transformations were studied, with structures in agreement with recent X-ray determinations. Conformational analyses have provided thermodynamic validity of the geometric structures used. The B3LYP/DZVP and B3LYP/BS1 methods (BS1 = TZVP(H,C,O) + SDD(Pd,I)) were comparatively employed, with C6F6 solvent contributions accounted for by the IDSCRF method; key transition states were confirmed by intrinsic reaction coordinate determinations. The novel reaction mechanism proposed was divided into the following four steps: C-H activation, oxidation, reductive elimination, catalyst recovery. Two competing reaction routes were quantitatively compared, differing in the oxidation state of Pd (+2 vs +4). Results reveal the pathway involving Pd(IV) intermediates to be more spontaneous and, therefore, more probable than the Pd(II) path, the latter hindered by a kinetically inaccessible reductive elimination step, with total energy and free energy barriers of 41.0 and 38.6 kcal·mol(-1), respectively. The roles played by the oxidant and Pd(IV) species have also been addressed through Bader's atoms-in-molecules wave function analyses, providing a quantitative electronic metric for C-H activation chemistry.