Heterogeneous selectivity and morphological evolution of marine clades during the Permian-Triassic mass extinction.

Morphological disparity and taxonomic diversity are distinct measures of biodiversity, typically expected to evolve synergistically. However, evidence from mass extinctions indicates that they can be decoupled, and while mass extinctions lead to a drastic loss of diversity, their impact on disparity remains unclear. Here we evaluate the dynamics of morphological disparity and extinction selectivity across the Permian-Triassic mass extinction. We developed an automated approach, termed DeepMorph, for the extraction of morphological features from fossil images using a deep learning model and applied it to a high-resolution temporal dataset encompassing 599 genera across six marine clades. Ammonoids, brachiopods and ostracods experienced a selective loss of complex and ornamented forms, while bivalves, gastropods and conodonts did not experience morphologically selective extinctions. The presence and intensity of morphological selectivity probably reflect the variations in environmental tolerance thresholds among different clades. In clades affected by selective extinctions, the intensity of diversity loss promoted the loss of morphological disparity. Conversely, under non-selective extinctions, the magnitude of diversity loss had a negligible impact on disparity. Our results highlight that the Permian-Triassic mass extinction had heterogeneous morphological selective impacts across clades, offering new insights into how mass extinctions can reshape biodiversity and ecosystem structure.

Respiratory protein-driven selectivity during the Permian-Triassic mass extinction.

Extinction selectivity determines the direction of macroevolution, especially during mass extinction; however, its driving mechanisms remain poorly understood. By investigating the physiological selectivity of marine animals during the Permian-Triassic mass extinction, we found that marine clades with lower O2-carrying capacity hemerythrin proteins and those relying on O2 diffusion experienced significantly greater extinction intensity and body-size reduction than those with higher O2-carrying capacity hemoglobin or hemocyanin proteins. Our findings suggest that animals with high O2-carrying capacity obtained the necessary O2 even under hypoxia and compensated for the increased energy requirements caused by ocean acidification, which enabled their survival during the Permian-Triassic mass extinction. Thus, high O2-carrying capacity may have been crucial for the transition from the Paleozoic to the Modern Evolutionary Fauna.

Repeated pulses of volcanism drove the end-Permian terrestrial crisis in northwest China.

The Permo-Triassic mass extinction was linked to catastrophic environmental changes and large igneous province (LIP) volcanism. In addition to the widespread marine losses, the Permo-Triassic event was the most severe terrestrial ecological crisis in Earth's history and the only known mass extinction among insects, but the cause of extinction on land remains unclear. In this study, high-resolution Hg concentration records and multiple-archive S-isotope analyses of sediments from the Junggar Basin (China) provide evidence of repeated pulses of volcanic-S (acid rain) and increased Hg loading culminating in a crisis of terrestrial biota in the Junggar Basin coeval with the interval of LIP emplacement. Minor S-isotope analyses are, however, inconsistent with total ozone layer collapse. Our data suggest that LIP volcanism repeatedly stressed end-Permian terrestrial environments in the ~300 kyr preceding the marine extinction locally via S-driven acidification and deposition of Hg, and globally via pulsed addition of CO2.

Automatic identification and morphological comparison of bivalve and brachiopod fossils based on deep learning.

Fossil identification is an essential and fundamental task for conducting palaeontological research. Because the manual identification of fossils requires extensive experience and is time-consuming, automatic identification methods are proposed. However, these studies are limited to a few or dozens of species, which is hardly adequate for the needs of research. This study enabled the automatic identification of hundreds of species based on a newly established fossil dataset. An available "bivalve and brachiopod fossil image dataset" (BBFID, containing >16,000 "image-label" data pairs, taxonomic determination completed) was created. The bivalves and brachiopods contained in BBFID are closely related in morphology, ecology and evolution that have long attracted the interest of researchers. We achieved >80% identification accuracy at 22 genera and ∼64% accuracy at 343 species using EfficientNetV2s architecture. The intermediate output of the model was extracted and downscaled to obtain the morphological feature space of fossils using t-distributed stochastic neighbor embedding (t-SNE). We found a distinctive boundary between the morphological feature points of bivalves and brachiopods in fossil morphological feature distribution maps. This study provides a possible method for studying the morphological evolution of fossil clades using computer vision in the future.

Volcanic CO2 degassing postdates thermogenic carbon emission during the end-Permian mass extinction.

Massive carbon dioxide (CO2) emissions are widely assumed to be the driver of the end-Permian mass extinction (EPME). However, the rate of and total CO2 released, and whether the source changes with time, remain poorly understood, leaving a key question surrounding the trigger for the EPME unanswered. Here, we assimilate reconstructions of atmospheric Pco2 and carbonate δ13C in an Earth system model to unravel the history of carbon emissions and sources across the EPME. We infer a transition from a CO2 source with a thermogenic carbon isotopic signature associated with a slower emission rate to a heavier, more mantle-dominated volcanic source with an increased rate of emissions. This implies that the CO2 degassing style changed as the Siberian Traps emplacement evolved, which is consistent with geochemical proxy records. Carbon cycle feedbacks from terrestrial ecosystem disturbances may have further amplified the warming and the severity of marine extinctions.

Mid-latitudinal habitable environment for marine eukaryotes during the waning stage of the Marinoan snowball glaciation.

During the Marinoan Ice Age (ca. 654-635 Ma), one of the 'Snowball Earth' events in the Cryogenian Period, continental icesheets reached the tropical oceans. Oceanic refugia must have existed for aerobic marine eukaryotes to survive this event, as evidenced by benthic phototrophic macroalgae of the Songluo Biota preserved in black shales interbedded with glacial diamictites of the late Cryogenian Nantuo Formation in South China. However, the environmental conditions that allowed these organisms to thrive are poorly known. Here, we report carbon-nitrogen-iron geochemical data from the fossiliferous black shales and adjacent diamictites of the Nantuo Formation. Iron-speciation data document dysoxic-anoxic conditions in bottom waters, whereas nitrogen isotopes record aerobic nitrogen cycling perhaps in surface waters. These findings indicate that habitable open-ocean conditions were more extensive than previously thought, extending into mid-latitude coastal oceans and providing refugia for eukaryotic organisms during the waning stage of the Marinoan Ice Age.

A Mesozoic fossil lagerstätte from 250.8 million years ago shows a modern-type marine ecosystem.

Finely preserved fossil assemblages (lagerstätten) provide crucial insights into evolutionary innovations in deep time. We report an exceptionally preserved Early Triassic fossil assemblage, the Guiyang Biota, from the Daye Formation near Guiyang, South China. High-precision uranium-lead dating shows that the age of the Guiyang Biota is 250.83 +0.07/-0.06 million years ago. This is only 1.08 ± 0.08 million years after the severe Permian-Triassic mass extinction, and this assemblage therefore represents the oldest known Mesozoic lagerstätte found so far. The Guiyang Biota comprises at least 12 classes and 19 orders, including diverse fish fauna and malacostracans, revealing a trophically complex marine ecosystem. Therefore, this assemblage demonstrates the rapid rise of modern-type marine ecosystems after the Permian-Triassic mass extinction.

Thresholds of temperature change for mass extinctions.

Climate change is a critical factor affecting biodiversity. However, the quantitative relationship between temperature change and extinction is unclear. Here, we analyze magnitudes and rates of temperature change and extinction rates of marine fossils through the past 450 million years (Myr). The results show that both the rate and magnitude of temperature change are significantly positively correlated with the extinction rate of marine animals. Major mass extinctions in the Phanerozoic can be linked to thresholds in climate change (warming or cooling) that equate to magnitudes >5.2 °C and rates >10 °C/Myr. The significant relationship between temperature change and extinction still exists when we exclude the five largest mass extinctions of the Phanerozoic. Our findings predict that a temperature increase of 5.2 °C above the pre-industrial level at present rates of increase would likely result in mass extinction comparable to that of the major Phanerozoic events, even without other, non-climatic anthropogenic impacts.

Mercury deposition in Western Tethys during the Carnian Pluvial Episode (Late Triassic).

The Late Triassic Carnian Pluvial Episode (CPE) was a time of biological turnover and environmental perturbations. Within the CPE interval, C-isotope and sedimentary records indicate multiple pulses of depleted carbon into the atmosphere-ocean system linked to discrete enhancements of the hydrological cycle. Data suggest a similar cascade of events to other extinctions, including being potentially driven by emplacement of a large igneous province (LIP). The age of the Wrangellia LIP overlaps that of the CPE, but a direct link between volcanism and the pulsed CPE remains elusive. We present sedimentary Hg concentrations from Western Tethys successions to investigate volcanic activity through the previously established CPE global negative C-isotope excursions (NCIEs). Higher Hg concentrations and Hg/TOC are recorded just before and during NCIEs and siliciclastic inputs. The depositional settings suggest volcanic Hg inputs into the basins over the NCIEs rather than increases of Hg drawdown or riverine transport. Differences in Hg and Hg/TOC signals between the basins might be linked to coeval LIP style or the temporal resolution of the sedimentary successions. Overall, our new data provide support for a link between pulses of Wrangellia LIP volcanism, NCIEs, and humid phases that mark the CPE in the Western Tethys.

Six-fold increase of atmospheric pCO2 during the Permian-Triassic mass extinction.

The Permian-Triassic mass extinction was marked by a massive release of carbon into the ocean-atmosphere system, evidenced by a sharp negative carbon isotope excursion. Large carbon emissions would have increased atmospheric pCO2 and caused global warming. However, the magnitude of pCO2 changes during the PTME has not yet been estimated. Here, we present a continuous pCO2 record across the PTME reconstructed from high-resolution δ13C of C3 plants from southwestern China. We show that pCO2 increased from 426 +133/-96 ppmv in the latest Permian to 2507 +4764/-1193 ppmv at the PTME within about 75 kyr, and that the reconstructed pCO2 significantly correlates with sea surface temperatures. Mass balance modelling suggests that volcanic CO2 is probably not the only trigger of the carbon cycle perturbation, and that large quantities of 13C-depleted carbon emission from organic matter and methane were likely required during complex interactions with the Siberian Traps volcanism.

Permo-Triassic boundary carbon and mercury cycling linked to terrestrial ecosystem collapse.

Records suggest that the Permo-Triassic mass extinction (PTME) involved one of the most severe terrestrial ecosystem collapses of the Phanerozoic. However, it has proved difficult to constrain the extent of the primary productivity loss on land, hindering our understanding of the effects on global biogeochemistry. We build a new biogeochemical model that couples the global Hg and C cycles to evaluate the distinct terrestrial contribution to atmosphere-ocean biogeochemistry separated from coeval volcanic fluxes. We show that the large short-lived Hg spike, and nadirs in δ202Hg and δ13C values at the marine PTME are best explained by a sudden, massive pulse of terrestrial biomass oxidation, while volcanism remains an adequate explanation for the longer-term geochemical changes. Our modelling shows that a massive collapse of terrestrial ecosystems linked to volcanism-driven environmental change triggered significant biogeochemical changes, and cascaded organic matter, nutrients, Hg and other organically-bound species into the marine system.

The onset of widespread marine red beds and the evolution of ferruginous oceans.

Banded iron formations were a prevalent feature of marine sedimentation ~3.8-1.8 billion years ago and they provide key evidence for ferruginous oceans. The disappearance of banded iron formations at ~1.8 billion years ago was traditionally taken as evidence for the demise of ferruginous oceans, but recent geochemical studies show that ferruginous conditions persisted throughout the later Precambrian, and were even a feature of Phanerozoic ocean anoxic events. Here, to reconcile these observations, we track the evolution of oceanic Fe-concentrations by considering the temporal record of banded iron formations and marine red beds. We find that marine red beds are a prominent feature of the sedimentary record since the middle Ediacaran (~580 million years ago). Geochemical analyses and thermodynamic modelling reveal that marine red beds formed when deep-ocean Fe-concentrations were > 4 nM. By contrast, banded iron formations formed when Fe-concentrations were much higher (> 50 µM). Thus, the first widespread development of marine red beds constrains the timing of deep-ocean oxygenation.The evolution of oceanic redox state in the past is poorly known. Here, the authors present a temporal record of banded iron formations and marine red beds, which indicate deep-ocean oxygenation occurred in the middle Ediacaran, coinciding with the onset of widespread marine red beds.

Early Triassic wrinkle structures on land: stressed environments and oases for life.

Wrinkle structures in rocks younger than the Permian-Triassic (P-Tr) extinction have been reported repeatedly in marine strata, but rarely mentioned in rocks recording land. Here, three newly studied terrestrial P-Tr boundary rock succession in North China have yielded diverse wrinkle structures. All of these wrinkles are preserved in barely bioturbated shore-shallow lacustrine siliciclastic deposits of the Liujiagou Formation. Conversely, both the lacustrine siliciclastic deposits of the underlying Sunjiagou Formation and the overlying Heshanggou Formation show rich bioturbation, but no wrinkle structures or other microbial-related structures. The occurrence of terrestrial wrinkle structures in the studied sections reflects abnormal hydrochemical and physical environments, presumably associated with the extinction of terrestrial organisms. Only very rare trace fossils occurred in the aftermath of the P-Tr extinction, but most of them were preserved together with the microbial mats. This suggests that microbial mats acted as potential oases for the surviving aquatic animals, as a source of food and oxygen. The new finds suggests that extreme environmental stresses were prevalent both in the sea and on land through most of the Early Triassic.

Anoxia/high temperature double whammy during the Permian-Triassic marine crisis and its aftermath.

The Permian-Triassic mass extinction was the most severe biotic crisis in the past 500 million years. Many hypotheses have been proposed to explain the crisis, but few account for the spectrum of extinction selectivity and subsequent recovery. Here we show that selective losses are best accounted for by a combination of lethally warm, shallow waters and anoxic deep waters that acted to severely restrict the habitable area to a narrow mid-water refuge zone. The relative tolerance of groups to this double whammy provides the first clear explanation for the selective extinction losses during this double-pulsed crisis and also the fitful recovery. Thus, high temperature intolerant shallow-water dwellers, such as corals, large foraminifers and radiolarians were eliminated first whilst high temperature tolerant ostracods thrived except in anoxic deeper-waters. In contrast, hypoxia tolerant but temperature intolerant small foraminifers were driven from shallow-waters but thrived on dysoxic slopes margins. Only those mollusc groups, which are tolerant of both hypoxia and high temperatures, were able to thrive in the immediate aftermath of the extinction. Limited Early Triassic benthic recovery was restricted to mid-water depths and coincided with intervals of cooling and deepening of water column anoxia that expanded the habitable mid-water refuge zone.