Interfacing Arduino Boards with Optical Sensor Arrays: Overview and Realization of an Accurate Solar Compass.

In this paper, an overview of the potentiality of Arduino boards is presented, together with a description of the Arduino interfacing with light multi-sensors. These sensors can be arranged in linear arrays or in a matrix configuration (CCD or CMOS type cameras) and are equipped with tens, hundreds, or even thousands of elements whose sizes range from a few microns to tens of microns. The use of these sensors requires electronics that have high time accuracy, since they work through regular pulses sent by an external source and, furthermore, have the ability to digitize and store voltage signals precisely and quickly. We show that, with the appropriate settings, a simple Arduino board can handle both 1D and 2D optical sensors. Finally, we describe a solar compass made with such a board coupled to one of the tested optical array sensors that is capable of providing the north direction with a very high degree of accuracy.

Monitoring of Cleaning Treatments for Paper Heritage with Raman Spectroscopy Mapping.

In the field of book heritage, it is important to develop cleaning/disinfecting treatments that can slow down the degradation of paper to prevent evident and irreversible damage. The objectives of the cleaning treatments are to remove external contaminants and oxidation and decomposition products of the paper, but these processes must not modify the unique characteristics of the book heritage resulting in irreversible changes in the structure of the paper. Recently, several innovative cleaning treatments were developed with the aim of being minimally invasive; however, to assess the effect of these treatments on paper, it is necessary to use a diagnostic non-destructive, rapid, and affordable process. In previous work, we used surface scanning Raman spectroscopy to develop a diagnostic protocol able to follow the aging processes of the paper, discriminating between hydrolysis and oxidation. In this paper, we applied this protocol to study the action of different types of treatments (hydrogel and EUV irradiation), evaluating both their effectiveness and impact on paper parameters. The results reported here demonstrate that the developed in operando diagnostic procedure can follow the changes in the paper structure comparing them to the variability due to the intrinsic inhomogeneity of paper, without sample contact in a rapid and effective way.

Converting a smartphone into an accurate solar compass.

We have developed an app, named Sunpass, that is able to convert every smartphone into a solar compass. Sunpass uses input data from the smartphone sensors, calculates the Sun position, and elaborates data to give the desired information. The azimuth values measured by a smartphone equipped with Sunpass show a typical accuracy of 0.5°, which is limited by camera aberrations and misalignment of both accelerometer and CCD camera of the smartphone. In this paper, we show that both accuracy and reliability in azimuth measurements can be improved by a specific calibration procedure and a dedicated mechanical tool. We obtained a remarkable accuracy better than 0.06° on the single azimuth measurements, which improves to 0.03° on the average of eight measurements.

Electro-optical sun compass with a very high degree of accuracy.

We present a novel electro-optical solar compass that is able to determine the true North direction with an accuracy better than 1/100 of degree, superior to that of any other magnetic or electronic compass that does not resort to differential GPS. The compass has an electronic sensor to determine the line of sight of the Sun and a simple but effective algorithm to calculate the position of the Sun. The excellent results obtained during the experimental tests demonstrate the advantages of this compass, which is also compact and not expensive.

A Polymer Physics Model to Dissect Genome Organization in Healthy and Pathological Phenotypes.

Novel technologies revealed a nontrivial spatial organization of the chromosomes within the cell nucleus, which includes different levels of compartmentalization and architectural patterns. Notably, such complex three-dimensional structure plays a crucial role in vital biological functions and its alterations can produce extensive rewiring of genomic regulatory regions, thus leading to gene misexpression and disease. Here, we show that theoretical and computational approaches, based on polymer physics, can be employed to dissect chromatin contacts in three-dimensional space and to predict the effects of pathogenic structural variants on the genome architecture. In particular, we discuss the folding of the human EPHA4 and the murine Pitx1 loci as case studies.

Qualitative detection of Mg content in a leaf of Hedera helix by using X-ray radiation from a laser plasma source.

In this article, a method to reveal the presence of Mg content inside the different parts of leaves of Hedera helix is presented. In fact a sample of a Hedera helix's leaf, commonly characterized by a green and a white side, is analyzed under X-ray radiation. The presence of two zones with different colors in the Hedera helix's leaf has not been explained. In this connection, there are presently three hypotheses to explain the characteristic double-color appearance of the leaf. The first hypothesis suggests a different cytoplasmic inheritance of chloroplasts at the cell division, the second a different allelic composition, homozygote and heterozygote, between the two zones, and finally the third the action of a virus which changes the color properties in the Hedera's leaves. The resulting effect is a different content of "something" between the green and the white side. We utilized X-ray radiation, obtained from a plasma source with a Mg target, to image Hedera helix leaves and we found that the green side of the leaf is highlighted. We may suppose that the reason why the X-rays from a Mg plasma source, allow us to pick up the green side is probably due to the greater presence of the amount of Mg (from chlorophyll or other complexes and/or salts) in the two sides, green and white, of the leaf.

High-resolution water window X-ray imaging of in vivo cells and their products using LiF crystal detectors.

High contrast imaging of in vivo Chlorella sorokiniana cells with submicron spatial resolution was obtained with a contact water window X-ray microscopy technique using a point-like, laser-plasma produced, water-window X-ray radiation source, and LiF crystals as detectors. This novel type of X-ray imaging detectors is based on photoluminescence of stable electronic point defects, characterized by high intrinsic resolution. The fluorescence images obtained on LiF crystals exposed in single-shot experiments demonstrate the high sensitivity and dynamic range of this new detector. The powerful performances of LiF crystals allowed us to detect the exudates of Chlorella cells in their living medium and their spatial distribution in situ, without any special sample preparation.

Microradiography as a tool to detect heavy metal uptake in plants for phytoremediation applications.

In this paper, an application of contact microradiography with soft X-rays for detecting the uptake site of heavy metal in the whole plant leaves is investigated. The X-ray source is a laser-plasma one based on an Nd:glass laser. The soft X-ray radiation emitted from the plasma laser targets of magnesium, iron, and copper can be strongly absorbed in the leaves' regions rich in iron, magnesium, and copper. This absorbance could point to structures in the leaves where these heavy elements are found. In this work, leaves treated with copper sulfate diluted in water at 1, 2, and 5% were imaged by using a copper target, in order to evaluate differences with untreated control leaves. Our results showed that this methodology highlighted the presence of copper in the treated leaves. This new methodology should detect heavy element pollutants inside plants and it should also be a useful analytic tool in phytoremediation studies.

Differences in X-ray absorption due to cadmium treatment in Saponaria officinalis leaves.

A method for detecting cadmium uptake in leaves of Saponaria officinalis doped with a solution of cadmium acetate is described. The technique based on the exposure of dried leaves to X-rays of a wavelength close to that of the metal K-edge could be useful for phytoremediation studies as it could reveal the bioaccumulation in plants due to the treatment either in vivo or in vitro with heavy metals. X-ray microradiography measurements are in agreement with those from peroxidase enzyme assay utilized to follow the oxidative damage induced by heavy metals. At present, as we will see in this report, microradiography has still poorer sensitivity in comparison with enzyme assay, but it has the advantage of being faster, not destructive, and usable even at very high doping levels, where the enzyme assay technique results are fully saturated. Further analysis of the optical density values could lead to a quantitative measurement of the heavy metal in the sample. Thus, the technology developed in this article could be useful for tracing the intake in phytoremediation studies.

Detection of lead in Zea mays by dual-energy X-ray microtomography at the SYRMEP beamline of the ELETTRA synchrotron and by atomic absorption spectroscopy.

This study is related to the application of the X-ray dual-energy microradiography technique together with the atomic absorption spectroscopy (AAS) for the detection of lead on Zea mays stem, ear, root, and leaf samples. To highlight the places with lead intake, the planar radiographs taken with monochromatic X-ray radiation in absorption regime with photon energy below and above the absorption edge of a given chemical element, respectively, are analyzed and processed. To recognize the biological structures involved in the intake, the dual-energy images with the lead signal have been compared with the optical images of the same Z. mays stem. The ear, stem, root, and leaf samples have also been analyzed with the AAS technique to measure the exact amount of the hyperaccumulated lead. The AAS measurement revealed that the highest intake occurred in the roots while the lowest in the maize ears and in the leaf. It seems there is a particular mechanism that protects the seeds and the leaves in the intake process.

X-ray microscopy of plant cells by using LiF crystal as a detector.

A lithium fluoride (LiF) crystal has been utilized as a new soft X-ray detector to image different biological samples at a high spatial resolution. This new type of image detector for X-ray microscopy has many interesting properties: high resolution (nanometer scale), permanent storage of images, the ability to clear the image and reuse the LiF crystal, and high contrast with greater dynamic range. Cells of the unicellular green algae Chlamydomonas dysosmos and Chlorella sorokiniana, and pollen grains of Olea europea have been used as biological materials for imaging. The biological samples were imaged on LiF crystals by using the soft X-ray contact microscopy and contact micro-radiography techniques. The laser plasma soft X-ray source was generated using a Nd:YAG/Glass laser focused on a solid target. The X-ray energy range for image acquisition was in the water-window spectral range for single shot contact microscopy of very thin biological samples (single cells) and around 1 keV for multishots microradiography. The main aim of this article is to highlight the possibility of using a LiF crystal as a detector for the biological imaging using soft X-ray radiation and to demonstrate its ability to visualize the microstructure within living cells.

Analytical design method for a modified Schwarzschild optics.

An innovative solution for the Schwarzschild optic, based on a modification of the position of the object, is proposed. This solution allows one to reach a larger numerical aperture and hence a better resolution compared with the standard configuration of the Schwarzschild optics. Furthermore, we propose an analytical solution that allows the optical system to be designed without the need of any ray-tracing software.