Understanding C-H bond oxidations: H. and H- transfer in the oxidation of toluene by permanganate.

The oxidation of toluene by permanganate has been studied as a model for the oxidation of C-H bonds by metal reagents, metalloenzymes, and metal oxide surfaces. In water, the reaction proceeds by hydride (H-) transfer from toluene to a permanganate oxygen, whereas in toluene solution, permanganate abstracts a hydrogen atom (H.). The ability of permanganate to abstract a hydrogen atom is rationalized on the basis of the strong O-H bond formed on H. addition to permanganate. This approach allows understanding and prediction of the rates of hydrogen atom transfer from substrates to metal active sites.

A region of the Sir1 protein dedicated to recognition of a silencer and required for interaction with the Orc1 protein in saccharomyces cerevisiae.

Silencing of the cryptic mating-type loci HMR and HML requires the recognition of DNA sequence elements called silencers by the Sir1p, one of four proteins dedicated to the assembly of silenced chromatin in Saccharomyces cerevisiae. The Sir1p is thought to recognize silencers indirectly through interactions with proteins that bind the silencer DNA directly, such as the origin recognition complex (ORC). Eight recessive alleles of SIR1 were discovered that encode mutant Sir1 proteins specifically defective in their ability to recognize the HMR-E silencer. The eight missense mutations all map within a 17-amino-acid segment of Sir1p, and this segment was also required for Sir1p's interaction with Orc1p. The mutant Sir1 proteins could function in silencing if tethered to a silencer directly through a heterologous DNA-binding domain. Thus the amino acids identified are required for Sir1 protein's recognition of the HMR-E silencer and interaction with Orc1p, but not for its ability to function in silencing per se. The approach used to find these mutations may be applicable to defining interaction surfaces on proteins involved in other processes that require the assembly of macromolecular complexes.

Evolutionary changes over the fifty-year history of a hybrid population of sunflowers (Helianthus).

Although there are many studies of the evolution and ecology of hybrid zones, few extend over long enough time periods to track evolutionary changes in the zones or assess the ultimate outcome of hybridization. Here we describe the current genetic and morphological composition of a hybrid sunflower population relative to its initial makeup 50 years ago. It appears that few genetically pure parental plants remain in the hybrid population and the average phenotype has shifted from an initial bias toward Helianthus bolanderi to a predominance of H. annuus-like plants. The similarity to H. annuus is more pronounced for morphology than for neutral genetic markers. In contrast to the shift in morphology that occurred primarily in the past 40 years, overall pollen viability increased to its current level during the first 10 to 15 years of hybridization, indicating the presence of strong fertility selection. Dramatic differences are seen in morphology, genetics, and pollen viability between the eastern and western halves of the population, thus confirming observations by previous authors and suggesting that selection pressures in the two halves differ. The trends seen in this hybrid population over the past 50 years suggest that H. bolanderi is undergoing genetic assimilation, and this trend may be representative of its fate throughout its range.

Giving context emotional significance by administration of aversive pictures.

Repeated presentation of a picture of an autopsy during a particular auditory context during two experimental sessions resulted in habituation of the unconditioned skin conductance response to the picture and in acquisition of conditioned emotional properties by the auditory context. An emotionally neutral picture, presented in a different auditory context provided a control condition for comparison with the aversive condition. The onset of the aversive auditory context evoked significantly larger skin conductance responses in Session 2 than were evoked by the neutral context. Furthermore, significantly more frequent unelicited skin conductance responses occurred during the aversive context than during the neutral one. These differences between the contexts were observed equally in subjects high in trait anxiety as in subjects low in trait anxiety. The high and low anxiety groups different in frequency of unelicited skin conductance responses, regardless of context. It was concluded that context can acquire conditioned tonic emotional properties as a result of the occurrence of phasic aversive events, even while the reactions to the phasic events are themselves habituating. This phenomenon does not interact with the subject's trait anxiety level.

The Sir1 protein's association with a silenced chromosome domain.

Silencing of the cryptic mating-type locus HMR requires recognition of a small DNA sequence element, the HMR-E silencer, by the Sir1p, one of four Sir proteins required for the assembly of silenced chromatin domains in Saccharomyces cerevisiae. The Sir1p recognizes the silencer through interactions with the origin recognition complex (ORC), a protein complex that binds the silencer DNA directly. Sir1p was physically associated with HMR in chromatin, and this association required a Sir1p-ORC interaction, suggesting that it reflected the Sir1p silencer-recognition function required for silencing. Sir1p was not associated with nonsilencer replication origins that bind the ORC, indicating that a Sir1p-ORC interaction is confined to silencers. Significantly, the other SIR genes were required for Sir1p's association with HMR. Thus, multiple protein contacts required for and unique to silent chromatin may confine a Sir1p-ORC interaction to silencers. The Sir1p was present at extremely low concentrations in yeast cells yet was associated with HMR at all stages of the cell cycle examined. These data provide insights into the mechanisms that establish and restrict the assembly of silenced chromatin to only a few discrete chromosomal domains.

Hybridization, introgression, and linkage evolution.

Genetic mapping methods provide a unique opportunity to study the interactions of differentiated genes and genomes in a hybrid genetic background. After a brief discussion of theoretical and analytical concerns, we review the application of these methods to a wide range of evolutionary issues. Map-based studies of experimental hybrids indicate that most postzygotic reproductive barriers in plants are polygenic and that the expression of extreme or novel traits in segregating hybrids (transgressive segregation) results from the complementary action of divergent parental alleles. However, genetic studies of hybrid vigor do not concur in their interpretations of the relative roles of dominance, overdominance, and epistasis. Map-based studies of natural hybrids are much rarer, but the few existing studies confirm the polygenic basis of postzygotic barriers and demonstrate the utility of genetic linkage for detecting cryptic introgression. In addition, studies of experimental and natural hybrid lineages provide compelling evidence that homoploid hybrid speciation has occurred in nature, and that it represents a rapid and repeatable mode of speciation. Data further indicate that this mode is facilitated by strong fertility selection and high chromosomal mutation rates. We recommend that future studies of hybrid genomes focus on natural hybrids, not only because of the paucity of data in this area, but also because of the availability of highly recombinant hybrid genotypes in hybrid zones. Of particular value will be studies of long-lived or difficult-to-propagate organisms, which previously have not been amenable to genetic study.

Partial nucleotide sequence of poplar mosaic virus RNA confirms its classification as a carlavirus.

The nucleotide sequence of the 3'-proximal 1328 nucleotides of poplar mosaic virus (PMV) was determined and shown to contain two large open reading frames (ORFs). The ORF nearer to the 3' terminus of the RNA is capable of encoding a polypeptide of 14K with a 'zinc-finger' motif, and is homologous to sequences in corresponding positions in five other carlaviruses. The other ORF encodes a protein of 36K which includes two sequences of amino acids identified in tryptic digests as virion capsid protein, and has amino acid sequences in common with both carlaviruses and potexviruses.