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1.

Defining the risk of SARS-CoV-2 variants on immune protection.

DeGrace, Marciela M; Ghedin, Elodie; Frieman, Matthew B; Krammer, Florian; Grifoni, Alba; Alisoltani, Arghavan; Alter, Galit; Amara, Rama R; Baric, Ralph S; Barouch, Dan H; Bloom, Jesse D; Bloyet, Louis-Marie; Bonenfant, Gaston; Boon, Adrianus C M; Boritz, Eli A; Bratt, Debbie L; Bricker, Traci L; Brown, Liliana; Buchser, William J; Carreño, Juan Manuel; Cohen-Lavi, Liel; Darling, Tamarand L; Davis-Gardner, Meredith E; Dearlove, Bethany L; Di, Han; Dittmann, Meike; Doria-Rose, Nicole A; Douek, Daniel C; Drosten, Christian; Edara, Venkata-Viswanadh; Ellebedy, Ali; Fabrizio, Thomas P; Ferrari, Guido; Fischer, Will M; Florence, William C; Fouchier, Ron A M; Franks, John; García-Sastre, Adolfo; Godzik, Adam; Gonzalez-Reiche, Ana Silvia; Gordon, Aubree; Haagmans, Bart L; Halfmann, Peter J; Ho, David D; Holbrook, Michael R; Huang, Yaoxing; James, Sarah L; Jaroszewski, Lukasz; Jeevan, Trushar; Johnson, Robert M.

Nature; 605(7911): 640-652, 2022 05.

Artículo en Inglés | MEDLINE | ID: mdl-35361968

2.

Host obesity impacts genetic variation in influenza A viral populations.

Knoll, Marissa; Honce, Rebekah; Meliopoulos, Victoria; Segredo-Otero, Ernesto Alejandro; Johnson, Katherine E E; Schultz-Cherry, Stacey; Ghedin, Elodie; Gresham, David.

J Virol; : e0177823, 2024 May 24.

Artículo en Inglés | MEDLINE | ID: mdl-38785423

3.

Influenza A virus reassortment is strain dependent.

Taylor, Kishana Y; Agu, Ilechukwu; José, Ivy; Mäntynen, Sari; Campbell, A J; Mattson, Courtney; Chou, Tsui-Wen; Zhou, Bin; Gresham, David; Ghedin, Elodie; Díaz Muñoz, Samuel L.

PLoS Pathog; 19(3): e1011155, 2023 03.

Artículo en Inglés | MEDLINE | ID: mdl-36857394

4.

Accurate virus identification with interpretable Raman signatures by machine learning.

Ye, Jiarong; Yeh, Yin-Ting; Xue, Yuan; Wang, Ziyang; Zhang, Na; Liu, He; Zhang, Kunyan; Ricker, RyeAnne; Yu, Zhuohang; Roder, Allison; Perea Lopez, Nestor; Organtini, Lindsey; Greene, Wallace; Hafenstein, Susan; Lu, Huaguang; Ghedin, Elodie; Terrones, Mauricio; Huang, Shengxi; Huang, Sharon Xiaolei.

Proc Natl Acad Sci U S A; 119(23): e2118836119, 2022 06 07.

Artículo en Inglés | MEDLINE | ID: mdl-35653572

5.

Influenza Defective Interfering Virus Promotes Multiciliated Cell Differentiation and Reduces the Inflammatory Response in Mice.

Wang, Chang; Honce, Rebekah; Salvatore, Mirella; Chow, Daniela; Randazzo, Davide; Yang, Jianjun; Twells, Nicholas M; Mahal, Lara K; Schultz-Cherry, Stacey; Ghedin, Elodie.

J Virol; 97(6): e0049323, 2023 06 29.

Artículo en Inglés | MEDLINE | ID: mdl-37255439

6.

Lower Airway Dysbiosis Augments Lung Inflammatory Injury in Mild-to-Moderate Chronic Obstructive Pulmonary Disease.

Sulaiman, Imran; Wu, Benjamin G; Chung, Matthew; Isaacs, Bradley; Tsay, Jun-Chieh J; Holub, Meredith; Barnett, Clea R; Kwok, Benjamin; Kugler, Matthias C; Natalini, Jake G; Singh, Shivani; Li, Yonghua; Schluger, Rosemary; Carpenito, Joseph; Collazo, Destiny; Perez, Luisanny; Kyeremateng, Yaa; Chang, Miao; Campbell, Christina D; Hansbro, Philip M; Oppenheimer, Beno W; Berger, Kenneth I; Goldring, Roberta M; Koralov, Sergei B; Weiden, Michael D; Xiao, Rui; D'Armiento, Jeanine; Clemente, Jose C; Ghedin, Elodie; Segal, Leopoldo N.

Am J Respir Crit Care Med; 208(10): 1101-1114, 2023 11 15.

Artículo en Inglés | MEDLINE | ID: mdl-37677136

7.

Clinical, Virologic, and Immunologic Evaluation of Symptomatic Coronavirus Disease 2019 Rebound Following Nirmatrelvir/Ritonavir Treatment.

Epling, Brian P; Rocco, Joseph M; Boswell, Kristin L; Laidlaw, Elizabeth; Galindo, Frances; Kellogg, Anela; Das, Sanchita; Roder, Allison; Ghedin, Elodie; Kreitman, Allie; Dewar, Robin L; Kelly, Sophie E M; Kalish, Heather; Rehman, Tauseef; Highbarger, Jeroen; Rupert, Adam; Kocher, Gregory; Holbrook, Michael R; Lisco, Andrea; Manion, Maura; Koup, Richard A; Sereti, Irini.

Clin Infect Dis; 76(4): 573-581, 2023 02 18.

Artículo en Inglés | MEDLINE | ID: mdl-36200701

8.

US National Institutes of Health Prioritization of SARS-CoV-2 Variants.

Turner, Sam; Alisoltani, Arghavan; Bratt, Debbie; Cohen-Lavi, Liel; Dearlove, Bethany L; Drosten, Christian; Fischer, Will M; Fouchier, Ron A M; Gonzalez-Reiche, Ana Silvia; Jaroszewski, Lukasz; Khalil, Zain; LeGresley, Eric; Johnson, Marc; Jones, Terry C; Mühlemann, Barbara; O'Connor, David; Sedova, Mayya; Shukla, Maulik; Theiler, James; Wallace, Zachary S; Yoon, Hyejin; Zhang, Yun; van Bakel, Harm; Degrace, Marciela M; Ghedin, Elodie; Godzik, Adam; Hertz, Tomer; Korber, Bette; Lemieux, Jacob; Niewiadomska, Anna M; Post, Diane J; Rolland, Morgane; Scheuermann, Richard; Smith, Derek J.

Emerg Infect Dis; 29(5)2023 05.

Artículo en Inglés | MEDLINE | ID: mdl-37054986

9.

Successful lung transplantation using an allograft from a COVID-19-recovered donor: a potential role for subgenomic RNA to guide organ utilization.

Saharia, Kapil K; Ramelli, Sabrina C; Stein, Sydney R; Roder, Allison E; Kreitman, Allie; Banakis, Stephanie; Chung, Joon-Yong; Burbelo, Peter D; Singh, Manmeet; Reed, Robert M; Patel, Vipul; Rabin, Joseph; Krupnick, Alexander S; Cohen, Jeffrey I; de Wit, Emmie; Ghedin, Elodie; Hewitt, Stephen M; Vannella, Kevin M; Chertow, Daniel S; Grazioli, Alison.

Am J Transplant; 23(1): 101-107, 2023 01.

Artículo en Inglés | MEDLINE | ID: mdl-36695611

10.

Structurally Conserved Domains between Flavivirus and Alphavirus Fusion Glycoproteins Contribute to Replication and Infectious-Virion Production.

Rangel, Margarita V; Catanzaro, Nicholas; Thannickal, Sara A; Crotty, Kelly A; Noval, Maria G; Johnson, Katherine E E; Ghedin, Elodie; Lazear, Helen M; Stapleford, Kenneth A.

J Virol; 96(2): e0177421, 2022 01 26.

Artículo en Inglés | MEDLINE | ID: mdl-34757841

11.

Evaluation of determinants of the serological response to the quadrivalent split-inactivated influenza vaccine.

Wu, Shaohuan; Ross, Ted M; Carlock, Michael A; Ghedin, Elodie; Choi, Hyungwon; Vogel, Christine.

Mol Syst Biol; 18(5): e10724, 2022 05.

Artículo en Inglés | MEDLINE | ID: mdl-35514207

12.

100-year-old pandemic flu viruses yield new genomes.

Nelson, Martha I; Ghedin, Elodie.

Nature; 607(7918): 244-245, 2022 07.

Artículo en Inglés | MEDLINE | ID: mdl-35794385

13.

New Proteomic Signatures to Distinguish Between Zika and Dengue Infections.

Allgoewer, Kristina; Maity, Shuvadeep; Zhao, Alice; Lashua, Lauren; Ramgopal, Moti; Balkaran, Beni N; Liu, Liyun; Purushwani, Savita; Arévalo, Maria T; Ross, Ted M; Choi, Hyungwon; Ghedin, Elodie; Vogel, Christine.

Mol Cell Proteomics; 20: 100052, 2021.

Artículo en Inglés | MEDLINE | ID: mdl-33582300

14.

A rapid and label-free platform for virus capture and identification from clinical samples.

Yeh, Yin-Ting; Gulino, Kristen; Zhang, YuHe; Sabestien, Aswathy; Chou, Tsui-Wen; Zhou, Bin; Lin, Zhong; Albert, Istvan; Lu, Huaguang; Swaminathan, Venkataraman; Ghedin, Elodie; Terrones, Mauricio.

Proc Natl Acad Sci U S A; 117(2): 895-901, 2020 01 14.

Artículo en Inglés | MEDLINE | ID: mdl-31882450

15.

Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.

Heindel, Daniel W; Koppolu, Sujeethraj; Zhang, Yue; Kasper, Brian; Meche, Lawrence; Vaiana, Christopher A; Bissel, Stephanie J; Carter, Chalise E; Kelvin, Alyson A; Elaish, Mohamed; Lopez-Orozco, Joaquin; Zhang, Bin; Zhou, Bin; Chou, Tsui-Wen; Lashua, Lauren; Hobman, Tom C; Ross, Ted M; Ghedin, Elodie; Mahal, Lara K.

Proc Natl Acad Sci U S A; 117(43): 26926-26935, 2020 10 27.

Artículo en Inglés | MEDLINE | ID: mdl-33046650

16.

Yearlong COVID-19 Infection Reveals Within-Host Evolution of SARS-CoV-2 in a Patient With B-Cell Depletion.

Nussenblatt, Veronique; Roder, Allison E; Das, Sanchita; de Wit, Emmie; Youn, Jung-Ho; Banakis, Stephanie; Mushegian, Alexandra; Mederos, Christopher; Wang, Wei; Chung, Matthew; Pérez-Pérez, Lizzette; Palmore, Tara; Brudno, Jennifer N; Kochenderfer, James N; Ghedin, Elodie.

J Infect Dis; 225(7): 1118-1123, 2022 04 01.

Artículo en Inglés | MEDLINE | ID: mdl-34940844

17.

Functional lower airways genomic profiling of the microbiome to capture active microbial metabolism.

Sulaiman, Imran; Wu, Benjamin G; Li, Yonghua; Tsay, Jun-Chieh; Sauthoff, Maya; Scott, Adrienne S; Ji, Kun; Koralov, Sergei B; Weiden, Michael; Clemente, Jose C; Jones, Drew; Huang, Yvonne J; Stringer, Kathleen A; Zhang, Lingdi; Geber, Adam; Banakis, Stephanie; Tipton, Laura; Ghedin, Elodie; Segal, Leopoldo N.

Eur Respir J; 58(1)2021 07.

Artículo en Inglés | MEDLINE | ID: mdl-33446604

18.

Pyruvate produced by Brugia spp. via glycolysis is essential for maintaining the mutualistic association between the parasite and its endosymbiont, Wolbachia.

Voronin, Denis; Schnall, Emily; Grote, Alexandra; Jawahar, Shabnam; Ali, Waleed; Unnasch, Thomas R; Ghedin, Elodie; Lustigman, Sara.

PLoS Pathog; 15(9): e1008085, 2019 09.

Artículo en Inglés | MEDLINE | ID: mdl-31568486

19.

Age-Dependent Glycomic Response to the 2009 Pandemic H1N1 Influenza Virus and Its Association with Disease Severity.

Chen, Shuhui; Kasper, Brian; Zhang, Bin; Lashua, Lauren P; Ross, Ted M; Ghedin, Elodie; Mahal, Lara K.

J Proteome Res; 19(11): 4486-4495, 2020 11 06.

Artículo en Inglés | MEDLINE | ID: mdl-32981324

20.

Development and Characterization of a Reverse-Genetics System for Influenza D Virus.

Yu, Jieshi; Liu, Runxia; Zhou, Bin; Chou, Tsui-Wen; Ghedin, Elodie; Sheng, Zizhang; Gao, Rongyuan; Zhai, Shao-Lun; Wang, Dan; Li, Feng.

J Virol; 93(21)2019 11 01.

Artículo en Inglés | MEDLINE | ID: mdl-31413133

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