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1.

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.

Xiao, Rui; Chen, Jia-Yu; Liang, Zhengyu; Luo, Daji; Chen, Geng; Lu, Zhi John; Chen, Yang; Zhou, Bing; Li, Hairi; Du, Xian; Yang, Yang; San, Mingkui; Wei, Xintao; Liu, Wen; Lécuyer, Eric; Graveley, Brenton R; Yeo, Gene W; Burge, Christopher B; Zhang, Michael Q; Zhou, Yu; Fu, Xiang-Dong.

Cell; 178(1): 107-121.e18, 2019 06 27.

Artículo en Inglés | MEDLINE | ID: mdl-31251911

2.

Codon optimality is a major determinant of mRNA stability.

Presnyak, Vladimir; Alhusaini, Najwa; Chen, Ying-Hsin; Martin, Sophie; Morris, Nathan; Kline, Nicholas; Olson, Sara; Weinberg, David; Baker, Kristian E; Graveley, Brenton R; Coller, Jeff.

Cell; 160(6): 1111-24, 2015 Mar 12.

Artículo en Inglés | MEDLINE | ID: mdl-25768907

3.

Probabilistic splicing of Dscam1 establishes identity at the level of single neurons.

Miura, Satoru K; Martins, André; Zhang, Kelvin X; Graveley, Brenton R; Zipursky, S Lawrence.

Cell; 155(5): 1166-77, 2013 Nov 21.

Artículo en Inglés | MEDLINE | ID: mdl-24267895

4.

Dynamic integration of splicing within gene regulatory pathways.

Braunschweig, Ulrich; Gueroussov, Serge; Plocik, Alex M; Graveley, Brenton R; Blencowe, Benjamin J.

Cell; 152(6): 1252-69, 2013 Mar 14.

Artículo en Inglés | MEDLINE | ID: mdl-23498935

5.

Poison Exon Splicing Regulates a Coordinated Network of SR Protein Expression during Differentiation and Tumorigenesis.

Leclair, Nathan K; Brugiolo, Mattia; Urbanski, Laura; Lawson, Shane C; Thakar, Ketan; Yurieva, Marina; George, Joshy; Hinson, John Travis; Cheng, Albert; Graveley, Brenton R; Anczuków, Olga.

Mol Cell; 80(4): 648-665.e9, 2020 11 19.

Artículo en Inglés | MEDLINE | ID: mdl-33176162

6.

Splicing up pluripotency.

Graveley, Brenton R.

Cell; 147(1): 22-4, 2011 Sep 30.

Artículo en Inglés | MEDLINE | ID: mdl-21962502

7.

Perspectives on ENCODE.

Snyder, Michael P; Gingeras, Thomas R; Moore, Jill E; Weng, Zhiping; Gerstein, Mark B; Ren, Bing; Hardison, Ross C; Stamatoyannopoulos, John A; Graveley, Brenton R; Feingold, Elise A; Pazin, Michael J; Pagan, Michael; Gilchrist, Daniel A; Hitz, Benjamin C; Cherry, J Michael; Bernstein, Bradley E; Mendenhall, Eric M; Zerbino, Daniel R; Frankish, Adam; Flicek, Paul; Myers, Richard M.

Nature; 583(7818): 693-698, 2020 07.

Artículo en Inglés | MEDLINE | ID: mdl-32728248

8.

A large-scale binding and functional map of human RNA-binding proteins.

Van Nostrand, Eric L; Freese, Peter; Pratt, Gabriel A; Wang, Xiaofeng; Wei, Xintao; Xiao, Rui; Blue, Steven M; Chen, Jia-Yu; Cody, Neal A L; Dominguez, Daniel; Olson, Sara; Sundararaman, Balaji; Zhan, Lijun; Bazile, Cassandra; Bouvrette, Louis Philip Benoit; Bergalet, Julie; Duff, Michael O; Garcia, Keri E; Gelboin-Burkhart, Chelsea; Hochman, Myles; Lambert, Nicole J; Li, Hairi; McGurk, Michael P; Nguyen, Thai B; Palden, Tsultrim; Rabano, Ines; Sathe, Shashank; Stanton, Rebecca; Su, Amanda; Wang, Ruth; Yee, Brian A; Zhou, Bing; Louie, Ashley L; Aigner, Stefan; Fu, Xiang-Dong; Lécuyer, Eric; Burge, Christopher B; Graveley, Brenton R; Yeo, Gene W.

Nature; 583(7818): 711-719, 2020 07.

Artículo en Inglés | MEDLINE | ID: mdl-32728246

9.

Cas4 Nucleases Define the PAM, Length, and Orientation of DNA Fragments Integrated at CRISPR Loci.

Shiimori, Masami; Garrett, Sandra C; Graveley, Brenton R; Terns, Michael P.

Mol Cell; 70(5): 814-824.e6, 2018 06 07.

Artículo en Inglés | MEDLINE | ID: mdl-29883605

10.

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases.

Webster, Michael W; Chen, Ying-Hsin; Stowell, James A W; Alhusaini, Najwa; Sweet, Thomas; Graveley, Brenton R; Coller, Jeff; Passmore, Lori A.

Mol Cell; 70(6): 1089-1100.e8, 2018 06 21.

Artículo en Inglés | MEDLINE | ID: mdl-29932902

11.

Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.

Dominguez, Daniel; Freese, Peter; Alexis, Maria S; Su, Amanda; Hochman, Myles; Palden, Tsultrim; Bazile, Cassandra; Lambert, Nicole J; Van Nostrand, Eric L; Pratt, Gabriel A; Yeo, Gene W; Graveley, Brenton R; Burge, Christopher B.

Mol Cell; 70(5): 854-867.e9, 2018 06 07.

Artículo en Inglés | MEDLINE | ID: mdl-29883606

12.

Late-life shift in caloric intake affects fly metabolism and longevity.

Li, Michael; Macro, Jacob; Meadows, Kali; Mishra, Dushyant; Martin, Dominique; Olson, Sara; Huggins, Billy Joe; Graveley, Brenton R; Li, James Y H; Rogina, Blanka.

Proc Natl Acad Sci U S A; 120(50): e2311019120, 2023 Dec 12.

Artículo en Inglés | MEDLINE | ID: mdl-38064506

13.

RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.

Benoit Bouvrette, Louis Philip; Wang, Xiaofeng; Boulais, Jonathan; Kong, Jian; Syed, Easin Uddin; Blue, Steven M; Zhan, Lijun; Olson, Sara; Stanton, Rebecca; Wei, Xintao; Yee, Brian; Van Nostrand, Eric L; Fu, Xiang-Dong; Burge, Christopher B; Graveley, Brenton R; Yeo, Gene W; Lécuyer, Eric.

Nucleic Acids Res; 51(D1): D1549-D1557, 2023 01 06.

Artículo en Inglés | MEDLINE | ID: mdl-36321651

14.

Type III-A CRISPR systems as a versatile gene knockdown technology.

Woodside, Walter T; Vantsev, Nikita; Catchpole, Ryan J; Garrett, Sandra C; Olson, Sara; Graveley, Brenton R; Terns, Michael P.

RNA; 28(8): 1074-1088, 2022 08.

Artículo en Inglés | MEDLINE | ID: mdl-35618430

15.

RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex.

Hale, Caryn R; Zhao, Peng; Olson, Sara; Duff, Michael O; Graveley, Brenton R; Wells, Lance; Terns, Rebecca M; Terns, Michael P.

Cell; 139(5): 945-56, 2009 Nov 25.

Artículo en Inglés | MEDLINE | ID: mdl-19945378

16.

RNA Matchmaking: Finding Cellular Pairing Partners.

Graveley, Brenton R.

Mol Cell; 63(2): 186-189, 2016 07 21.

Artículo en Inglés | MEDLINE | ID: mdl-27447984

17.

Distal Alternative Last Exons Localize mRNAs to Neural Projections.

Taliaferro, J Matthew; Vidaki, Marina; Oliveira, Ruan; Olson, Sara; Zhan, Lijun; Saxena, Tanvi; Wang, Eric T; Graveley, Brenton R; Gertler, Frank B; Swanson, Maurice S; Burge, Christopher B.

Mol Cell; 61(6): 821-33, 2016 Mar 17.

Artículo en Inglés | MEDLINE | ID: mdl-26907613

18.

Resources for the Comprehensive Discovery of Functional RNA Elements.

Sundararaman, Balaji; Zhan, Lijun; Blue, Steven M; Stanton, Rebecca; Elkins, Keri; Olson, Sara; Wei, Xintao; Van Nostrand, Eric L; Pratt, Gabriel A; Huelga, Stephanie C; Smalec, Brendan M; Wang, Xiaofeng; Hong, Eurie L; Davidson, Jean M; Lécuyer, Eric; Graveley, Brenton R; Yeo, Gene W.

Mol Cell; 61(6): 903-13, 2016 Mar 17.

Artículo en Inglés | MEDLINE | ID: mdl-26990993

19.

Unique properties of spacer acquisition by the type III-A CRISPR-Cas system.

Zhang, Xinfu; Garrett, Sandra; Graveley, Brenton R; Terns, Michael P.

Nucleic Acids Res; 50(3): 1562-1582, 2022 02 22.

Artículo en Inglés | MEDLINE | ID: mdl-34893878

20.

Direct tracking of reverse-transcriptase speed and template sensitivity: implications for sequencing and analysis of long RNA molecules.

Guo, Li-Tao; Olson, Sara; Patel, Shivali; Graveley, Brenton R; Pyle, Anna Marie.

Nucleic Acids Res; 50(12): 6980-6989, 2022 07 08.

Artículo en Inglés | MEDLINE | ID: mdl-35713547

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