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1.
Int J Mol Sci ; 25(9)2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38731965

RESUMEN

Antimicrobial resistance has recently been considered an emerging catastrophe globally. The public health and environmental threats were aggravated by the injudicious use of antibiotics in animal farming, aquaculture, and croup fields, etc. Consequently, failure of antibiotic therapies is common because of the emergence of multidrug-resistant (MDR) bacteria in the environment. Thus, the reduction in antibiotic spillage in the environment could be an important step for overcoming this situation. Bear in mind, this research was focused on the green synthesis of chitosan nanoparticles (ChiNPs) using Citrus lemon (Assam lemon) extract as a cross-linker and application in controlling MDR bacteria to reduce the antibiotic spillage in that sector. For evaluating antibacterial activity, Staphylococcus aureus and Escherichia coli were isolated from environmental specimens, and their multidrug-resistant pattern were identified both phenotypically by disk diffusion and genotypically by detecting methicillin- (mecA), penicillin- (blaZ), and streptomycin (aadA1)-resistance encoding genes. The inhibitory zone's diameter was employed as a parameter for determining the antibacterial effect against MDR bacteria revealing 30 ± 0.4 mm, 34 ± 0.2 mm, and 36 ± 0.8 mm zones of inhibition against methicillin- (mecA) and penicillin (blaZ)-resistant S. aureus, and streptomycin (aadA1)-resistant E. coli, respectively. The minimum inhibitory concentration at 0.31 mg/mL and minimum bactericidal concentration at 0.62 mg/mL of yielded ChiNPs were used as the broad-spectrum application against MDR bacteria. Finally, the biocompatibility of ChiNPs was confirmed by showing a negligible decrease in BHK-21 cell viability at doses less than 2 MIC, suggesting their potential for future application in antibiotic-free farming practices.


Asunto(s)
Antibacterianos , Quitosano , Farmacorresistencia Bacteriana Múltiple , Escherichia coli , Nanopartículas , Staphylococcus aureus , Antibacterianos/farmacología , Antibacterianos/química , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/genética , Quitosano/farmacología , Quitosano/química , Farmacorresistencia Bacteriana Múltiple/efectos de los fármacos , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Tecnología Química Verde , Pruebas de Sensibilidad Microbiana , Nanopartículas/química , Proteínas de Unión a las Penicilinas/genética , Proteínas de Unión a las Penicilinas/metabolismo , Proteínas de Unión a las Penicilinas/antagonistas & inhibidores , Staphylococcus aureus/efectos de los fármacos
2.
J Water Health ; 20(6): 888-902, 2022 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-35768965

RESUMEN

This study investigated groundwater pollution and potential human health risks from arsenic, iron, and manganese in the rural area of Jashore, Bangladesh. Study results show that the mean value of groundwater pH is 7.25 ± 0.31, with a mean conductivity of 633.94 ± 327.41 µs/cm, while about 73, 97, and 91% of groundwater samples exceeded the Bangladesh drinking water standard limits for As, Fe, and Mn, respectively. Groundwater pollution evaluation indices, including the heavy metal pollution index, the heavy metal evaluation index, the degree of contamination, and the Nemerow pollution index, show that approximately 97, 82, 100, and 100% of samples are in the high degree of pollution category, respectively. Spatial distribution exhibited that the study area is highly exposed to As (73%), Fe (82%), and Mn (46%). In the case of non-carcinogenic health risk via oral exposure, about 94% of samples suggest a high category of risk for infants, and 97% of samples are found to be at high risk for children and adults. The carcinogenic risk of arsenic via an oral exposure pathway suggests that approximately 97% of the samples are found to be at high risk for infants, and all of the samples are at high risk for both adults and children.


Asunto(s)
Arsénico , Agua Subterránea , Metales Pesados , Contaminantes Químicos del Agua , Adulto , Arsénico/análisis , Arsénico/toxicidad , Bangladesh , Niño , Monitoreo del Ambiente , Humanos , Hierro/análisis , Manganeso/análisis , Manganeso/toxicidad , Medición de Riesgo , Contaminantes Químicos del Agua/análisis
3.
J Environ Sci (China) ; 121: 159-174, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-35654507

RESUMEN

In this study, concentrations of Cr, Mn, Ni, Cu, Zn, Cd and Pb were determined in road dusts collected from different locations in Dhaka to assess source, contamination status and health risk. Energy-dispersive X-ray fluorescence spectroscopy and energy-dispersive X-ray spectroscopy were used to determine Cr, Mn, Ni, Cu, Zn, Cd and Pb and their mean concentrations were 162.27 ± 29.46, 721.18 ± 180.14, 35.65 ± 12.55, 104.56 ± 128.33, 515.32 ± 321.90, BDL, and 342.82 ± 591.20 mg/kg, respectively. Among the heavy metals, highest concentrations of Cu, Zn and Pb were found at urban sites-7 (municipal waste dumping) and 8 (medical waste incineration). Highest concentration of Cr followed by Cu and Zn was found at site-5 (Tejgaon, urban). Principal component analysis revealed that anthropogenic activities are the potential sources for Cr, Ni, Cu, Zn and Pb while earth crust for Mn. Pollution index and pollution load index results suggested that all the sites were contaminated and/or degraded by Cr, Cu, Zn and Pb except sites-9 (urban), 10 (sub-urban), 11 (rural) while sites-7 and 8 (urban) were extremely degraded. For noncarcinogenic health risk, hazard quotient values for dermal were higher compared to that of inhalation/ingestion. Though hazard index values were less than 1 at all the sites, these were at least one order of magnitude higher for children group than that of adult group, thus the children group may face more noncarcinogenic health risk at sites-7 and 8. Values of incremental lifetime cancer risk were from 10-9 to 10-11 showed no carcinogenic health risk by road dusts contaminated with the heavy metals.


Asunto(s)
Polvo , Metales Pesados , Adulto , Bangladesh , Cadmio/análisis , Niño , Polvo/análisis , Monitoreo del Ambiente/métodos , Humanos , Plomo/análisis , Metales Pesados/análisis , Medición de Riesgo
4.
BMC Genomics ; 22(1): 706, 2021 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-34592925

RESUMEN

BACKGROUND: Improvement of wheat gercTriticum aestivum L.) yield could relieve global food shortages. Kernel size, as an important component of 1000-kernel weight (TKW), is always a significant consideration to improve yield for wheat breeders. Wheat related species possesses numerous elite genes that can be introduced into wheat breeding. It is thus vital to explore, identify, and introduce new genetic resources for kernel size from wheat wild relatives to increase wheat yield. RESULTS: In the present study, quantitative trait loci (QTL) for kernel length (KL) and width (KW) were detected in a recombinant inbred line (RIL) population derived from a cross between a wild emmer accession 'LM001' and a Sichuan endemic tetraploid wheat 'Ailanmai' using the Wheat 55 K single nucleotide polymorphism (SNP) array-based constructed linkage map and phenotype from six different environments. We identified eleven QTL for KL and KW including two major ones QKL.sicau-AM-3B and QKW.sicau-AM-4B, the positive alleles of which were from LM001 and Ailanmai, respectively. They explained 17.57 to 44.28% and 13.91 to 39.01% of the phenotypic variance, respectively. For these two major QTL, Kompetitive allele-specific PCR (KASP) markers were developed and used to successfully validate their effects in three F3 populations and two natural populations containing a panel of 272 Chinese wheat landraces and that of 300 Chinese wheat cultivars, respectively. QKL.sicau-AM-3B was located at 675.6-695.4 Mb on chromosome arm 3BL. QKW.sicau-AM-4B was located at 444.2-474.0 Mb on chromosome arm 4BL. Comparison with previous studies suggested that these two major QTL were likely new loci. Further analysis indicated that the positive alleles of QKL.sicau-AM-3B and QKW.sicau-AM-4B had a great additive effect increasing TKW by 6.01%. Correlation analysis between KL and other agronomic traits showed that KL was significantly correlated to spike length, length of uppermost internode, TKW, and flag leaf length. KW was also significantly correlated with TKW. Four genes, TRIDC3BG062390, TRIDC3BG062400, TRIDC4BG037810, and TRIDC4BG037830, associated with kernel development were predicted in physical intervals harboring these two major QTL on wild emmer and Chinese Spring reference genomes. CONCLUSIONS: Two stable and major QTL for KL and KW across six environments were detected and verified in three biparental populations and two natural populations. Significant relationships between kernel size and yield-related traits were identified. KASP markers tightly linked the two major QTL could contribute greatly to subsequent fine mapping. These results suggested the application potential of wheat related species in wheat genetic improvement.


Asunto(s)
Fitomejoramiento , Triticum , Cromosomas de las Plantas/genética , Fenotipo , Polimorfismo de Nucleótido Simple , Tetraploidía , Triticum/genética
5.
Plant Mol Biol ; 104(1-2): 173-185, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-32734417

RESUMEN

KEY MESSAGE: A novel and major QTL for the effective tiller number was identified on chromosomal arm 1BL and validated in two genetic backgrounds The effective tiller number (ETN) substantially influences plant architecture and the wheat yield improvement. In this study, we constructed a genetic map of the 2SY (20828/SY95-71) recombinant inbred line population based on the Wheat 55K array as well as the simple sequence repeat (SSR) and Kompetitive Allele Specific PCR (KASP) markers. A comparison between the genetic and physical maps indicated the marker positions were consistent in the two maps. Additionally, we identified seven tillering-related quantitative trait locus (QTLs), including Qetn-sau-1B.1, which is a major QTL localized to a 6.17-cM interval flanked by markers AX-89635557 and AX-111544678 on chromosome 1BL. The Qetn-sau-1B.1 QTL was detected in eight environments and explained 12.12-55.71% of the phenotypic variance. Three genes associated with the ETN were detected in the physical interval of Qetn-sau-1B.1. We used a tightly linked KASP marker, KASP-AX-110129912, to further validate this QTL in two other populations with different genetic backgrounds. The results indicated that Qetn-sau-1B.1 significantly increased the ETN by up to 23.5%. The results of this study will be useful for the precise mapping and cloning of Qetn-sau-1B.1.


Asunto(s)
Cromosomas de las Plantas , Sitios de Carácter Cuantitativo/genética , Triticum/genética , Bangladesh , Mapeo Cromosómico , Marcadores Genéticos/genética , Genotipo , Repeticiones de Microsatélite , Anotación de Secuencia Molecular , Fenotipo
6.
Theor Appl Genet ; 133(1): 297-315, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31628527

RESUMEN

KEY MESSAGE: Major and environmentally stable QTL for flag leaf-related traits in wheat were identified and validated across ten environments using six populations with different genetic backgrounds. Flag leaf size and posture are two important factors of "ideotype" in wheat. Despite numerous studies on genetic analysis of flag leaf size including flag leaf length (FLL), width (FLW), area (FLA) and the ratio of length/width (FLR), few have focused on flag leaf posture including flag leaf angle (FLANG), opening angle (FLOA) and bend angle (FLBA). Further, the numbers of major, environmentally stable and verified genetic loci for flag leaf-related traits are limited. In this study, QTL for FLL, FLW, FLA, FLR, FLANG, FLOA and FLBA were identified based on a recombinant inbred line population together with values from up to ten different environments. Totally, eight major and stably expressed QTL were identified. Three co-located chromosomal intervals for seven major QTL were identified. The five major QTL QFll.sicau-5B.3 and QFll.sicau-2D.3 for FLL, QFlr.sicau-5B for FLR, QFlw.sicau-2D for FLW and QFla.sicau-2D for FLA were successfully validated by the tightly linked Kompetitive Allele Specific PCR (KASP) markers in the other five populations with different genetic backgrounds. A few genes related to leaf growth and development in intervals for these major QTL were predicated. Significant relationships between flag leaf- and yield-related traits were evidenced by analyses of Pearson correlations, conditional QTL and genetic mapping. Taken together, these results provide valuable information for understanding flag leaf size and posture of "ideotype" as well as fine mapping and breeding utilization of promising loci in bread wheat.


Asunto(s)
Hojas de la Planta/anatomía & histología , Sitios de Carácter Cuantitativo/genética , Carácter Cuantitativo Heredable , Triticum/anatomía & histología , Triticum/genética , Pan , Mapeo Cromosómico , Patrón de Herencia/genética , Tamaño de los Órganos/genética , Fenotipo , Reproducibilidad de los Resultados
7.
Theor Appl Genet ; 133(1): 367, 2020 01.
Artículo en Inglés | MEDLINE | ID: mdl-31664478

RESUMEN

Unfortunately, the author contribution statement was missed out in the original publication. The complete statement is given below.

8.
Environ Sci Technol ; 54(4): 2314-2322, 2020 02 18.
Artículo en Inglés | MEDLINE | ID: mdl-31951122

RESUMEN

Polychlorinated naphthalenes (PCNs) are globally transported, carcinogenic, persistent organic pollutants (POPs) that were recently added to the Stockholm Convention with 184 parties. The Tibetan Plateau plays an important role in the global transportation and distribution of POPs. Knowledge of PCN sources and transportation on the Tibetan Plateau is important for their control globally. In this study, we quantified the congener-specific concentrations of PCNs in lichen, moss, soil, and air samples collected on the Tibetan plateau and found that common lichens were effective biomonitors for predicting atmospheric PCNs in this area. The physiochemical properties of the PCNs, the temperatures, and the lichen lipid contents were identified as important factors influencing PCN partitioning between lichens and air. Lichen-air partitioning equations were established and used to predict PCN concentrations in air in Southeast Tibet. The lichens could be used as PCN biomonitors to clarify their spatial variations, sources, and transportation in the southeast of the plateau. PCN concentrations in lichens increased with altitude, suggesting that high-mountain cold-trapping influenced the PCN transportation behavior. Principal component analysis and linear discriminant analysis showed that the major source of PCNs in this region was long-range atmospheric transportation via the Indian monsoon in summer and wind from Southwest Asia in winter. This study provides a novel method using PCN congener profiles as fingerprints and statistical models for studying the geochemical effects of conditions in high-mountain regions on the contamination behaviors of 75 congeners of the notorious PCNs.


Asunto(s)
Contaminantes Atmosféricos , Hidrocarburos Clorados , Líquenes , Monitoreo del Ambiente , Naftalenos , Suelo , Tibet
9.
BMC Genomics ; 20(1): 650, 2019 Aug 14.
Artículo en Inglés | MEDLINE | ID: mdl-31412765

RESUMEN

BACKGROUND: Fusarium crown rot (FCR) is a chronic and severe disease in cereal production in semi-arid regions worldwide. A putative quantitative trait locus conferring FCR resistance, Qcrs.cpi-1H, had previously been mapped on the long arm of chromosome 1H in barley. RESULTS: In this study, five pairs of near-isogenic lines (NILs) targeting the 1HL locus were developed. Analysing the NILs found that the resistant allele at Qcrs.cpi-1H significantly reduced FCR severity. Transcriptomic analysis was then conducted against three of the NIL pairs, which placed the Qcrs.cpi-1H locus in an interval spanning about 11 Mbp. A total of 56 expressed genes bearing single nucleotide polymorphisms (SNPs) were detected in this interval. Five of them contain non-synonymous SNPs. These results would facilitate detailed mapping as well as cloning gene(s) underlying the resistance locus. CONCLUSION: NILs developed in this study and the transcriptomic sequences obtained from them did not only allow the validation of the resistance locus Qcrs.cpi-1H and the identification of candidate genes underlying its resistance, they also allowed the delineation of the resistance locus and the development of SNPs markers which formed a solid base for detailed mapping as well as cloning gene(s) underlying the locus.


Asunto(s)
Resistencia a la Enfermedad/genética , Fusarium/fisiología , Perfilación de la Expresión Génica , Sitios Genéticos/genética , Hordeum/genética , Hordeum/microbiología , Enfermedades de las Plantas/microbiología , Hordeum/inmunología , Enfermedades de las Plantas/inmunología , Polimorfismo de Nucleótido Simple , Sitios de Carácter Cuantitativo/genética
10.
J Neurosci Res ; 97(9): 1066-1080, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31102295

RESUMEN

Alzheimer's disease (AD) is characterized by progressive decline of cognition and associated neuropsychiatric signs including weight loss, anxiety, depression, agitation, and aggression, which is particularly pronounced in the female gender. Previously, we have shown that a novel ionic co-crystal of lithium salicylate proline (LISPRO) is an improved lithium formulation compared to the carbonate or salicylate form of lithium in terms of safety and efficacy in reducing AD pathology in Alzheimer's mice. The current study is designed to compare the prophylactic effects of LISPRO, lithium carbonate (LC), and lithium salicylate (LS) on cognitive and noncognitive impairments in female transgenic APPswe/PS1dE9 AD mice. Female APPswe/PS1dE9 mice at 4 months of age were orally treated with low-dose LISPRO, LS, or LC for 9 months at 2.25 mmol lithium/kg/day followed by determination of body weight, growth of internal organs, and cognitive and noncognitive behavior. No significant differences in body or internal organ weight, anxiety or locomotor activity were found between lithium treated and untreated APPswe/PS1dE9 cohorts. LISPRO, LC, and LS prevented spatial cognitive decline, as determined by Morris water maze and depression as determined by tail suspension test. In addition, LISPRO treatment was superior in preventing associative memory decline determined by contextual fear conditioning and reducing irritability determined by touch escape test in comparison with LC and LS. In conclusion, low-dose LISPRO, LC, and LS treatment prevent spatial cognitive decline and depression-like behavior, while LISPRO prevented hippocampal-dependent associative memory decline and irritability in APPswe/PS1dE9 mice.


Asunto(s)
Enfermedad de Alzheimer/tratamiento farmacológico , Conducta/efectos de los fármacos , Carbonato de Litio/farmacología , Compuestos de Litio/farmacología , Memoria/efectos de los fármacos , Animales , Peso Corporal/efectos de los fármacos , Condicionamiento Psicológico/efectos de los fármacos , Miedo/efectos de los fármacos , Femenino , Suspensión Trasera , Locomoción/efectos de los fármacos , Aprendizaje por Laberinto/efectos de los fármacos , Ratones , Ratones Transgénicos , Actividad Motora/efectos de los fármacos , Prolina , Salicilatos , Memoria Espacial/efectos de los fármacos
11.
Theor Appl Genet ; 132(1): 217-225, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-30327844

RESUMEN

KEY MESSAGE: This study demonstrates the feasibility of developing co-segregating markers and identifying candidate genes for Fusarium crown rot resistance in barley based on the generation and exploitation of a near-isogenic line-derived large population. Fusarium crown rot (FCR) is a chronic and severe disease in cereals in semi-arid regions worldwide. Previous studies showed that FCR assessment could be affected by many factors including plant height, growth rate as well as drought stress. Thus, accurate assessment, which is essential for detailed mapping of any locus conferring FCR resistance, is difficult. Targeting one of the resistance loci reported earlier, we developed a near-isogenic line-derived population consisting of 1820 F9 lines. By analysing this population, the Qcrs.cpi-4H locus was mapped to an interval of 0.09 cM covering a physical distance of about 637 kb and 13 markers co-segregating with the targeted locus were developed. Candidate genes underlying the resistance locus were identified by analysing the expression and sequence variation of genes in the targeted interval. The accurate localization and the development of co-segregating markers should facilitate the incorporation of this large-effect QTL into breeding programmes as well as the cloning of gene(s) underlying the locus.


Asunto(s)
Resistencia a la Enfermedad/genética , Marcadores Genéticos , Hordeum/genética , Fitomejoramiento , Enfermedades de las Plantas/genética , Mapeo Cromosómico , Fusarium/patogenicidad , Hordeum/microbiología , Enfermedades de las Plantas/microbiología
12.
Theor Appl Genet ; 132(11): 3155-3167, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31435704

RESUMEN

KEY MESSAGE: A major and stably expressed QTL for spikelet number per spike identified in a 2-cM interval on chromosome arm 2DS was validated using two populations with different genetic backgrounds. Spikelet number per spike (SNS) plays a key role in wheat yield improvement. Numerous genetic and environmental factors influencing SNS have been documented, but the number of major, stably expressed and validated loci underlying SNS is still limited. In this study, a recombinant inbred line (RIL) population derived from a normal spikelet cultivar and a multiple-spikelet wheat line (with a longer spike with more canonically oriented apical spikelets) was genotyped using a Wheat55K single-nucleotide polymorphism (SNP) array and simple sequence repeat (SSR) markers. SNS was measured for this RIL population in eight environments. Five QTL were each identified in two or more environments. One of them, QSns.sau-2D (LOD = 3.47-38.24, PVE = 10.16-45.68%), was detected in all the eight environments. The QTL was located in a 2-cM interval on chromosome arm 2DS flanked by the markers AX-109836946 and AX-111956072. This QTL, QSns.sau-2D, significantly increased SNS by up to 14.72%. Several genes associated with plant growth and development were identified in the physical interval of QSns.sau-2D. This QTL was further validated by the tightly linked Kompetitive Allele Specific PCR (KASP) marker, KASP-AX-94721936, in two other populations with different genetic backgrounds. The significant correlation between SNS and anthesis date, plant height, spike length, grain number per spike and thousand-grain weight were detected and discussed. These results lay the foundation for fine mapping and cloning gene(s) underlying QSns.sau-2D.


Asunto(s)
Genética de Población , Sitios de Carácter Cuantitativo , Triticum/genética , Alelos , Mapeo Cromosómico , Genotipo , Repeticiones de Microsatélite , Fenotipo , Triticum/crecimiento & desarrollo
13.
Theor Appl Genet ; 131(3): 613-624, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-29170790

RESUMEN

KEY MESSAGE: This study demonstrates how identification of genes underpinning disease-resistance QTL based on differential expression and SNPs can be improved by performing transcriptomic analysis on multiple near isogenic lines. Transcriptomic analysis has been widely used to understand the genetic basis of a trait of interest by comparing genotypes with contrasting phenotypes. However, these approaches identify such large sets of differentially expressed genes that it proves difficult to isolate which genes underpin the phenotype of interest. This study tests whether using multiple near isogenic lines (NILs) can improve the resolution of RNA-seq-based approaches to identify genes underpinning disease-resistance QTL. A set of NILs for a major effect Fusarium crown rot-resistance QTL in barley on the 4HL chromosome arm were analysed under Fusarium crown rot using RNA-seq. Differential gene expression and single nucleotide polymorphism detection analyses reduced the number of putative candidates from thousands within individual NIL pairs to only one hundred and two genes, which were differentially expressed or contained SNPs in common across NIL pairs and occurred on 4HL. Our findings support the value of performing RNA-seq analysis using multiple NILs to remove genetic background effects. The enrichment analyses indicated conserved differences in the response to infection between resistant and sensitive isolines suggesting that sensitive isolines are impaired in systemic defence response to Fusarium pseudograminearum.


Asunto(s)
Resistencia a la Enfermedad/genética , Hordeum/genética , Enfermedades de las Plantas/genética , Sitios de Carácter Cuantitativo , Análisis de Secuencia de ARN , Fusarium , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genotipo , Hordeum/microbiología , Fenotipo , Enfermedades de las Plantas/microbiología , Polimorfismo de Nucleótido Simple
14.
J Neurosci Res ; 95(4): 973-991, 2017 04.
Artículo en Inglés | MEDLINE | ID: mdl-27531392

RESUMEN

Soluble amyloid precursor protein α (sAPPα), a secreted proteolytic fragment of nonamyloidogenic amyloid precursor protein (APP) processing, is known for numerous neuroprotective functions. These functions include but are not limited to proliferation, neuroprotection, synaptic plasticity, memory formation, neurogenesis, and neuritogenesis in cell culture and animal models. In addition, sAPPα influences amyloid-ß (Aß) production by direct modulation of APP ß-secretase proteolysis as well as Aß-related or unrelated tau pathology, hallmark pathologies of Alzheimer's disease (AD). Thus, the restoration of sAPPα levels and functions in the brain by increasing nonamyloidogenic APP processing and/or manipulation of its signaling could reduce AD pathology and cognitive impairment. It is likely that identification and characterization of sAPPα receptors in the brain, downstream effectors, and signaling pathways will pave the way for an attractive therapeutic target for AD prevention or intervention. © 2016 Wiley Periodicals, Inc.


Asunto(s)
Enfermedad de Alzheimer/metabolismo , Péptidos beta-Amiloides/metabolismo , Precursor de Proteína beta-Amiloide/metabolismo , Encéfalo/metabolismo , Enfermedad de Alzheimer/terapia , Animales , Modelos Animales de Enfermedad , Humanos
15.
J Neurochem ; 135(3): 630-7, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26342176

RESUMEN

We recently found that sAPPα decreases amyloid-beta generation by directly associating with ß-site amyloid precursor protein (APP)-converting enzyme 1 (BACE1), thereby modulating APP processing. Because inhibition of BACE1 decreases glycogen synthase kinase 3 beta (GSK3ß)-mediated Alzheimer's disease (AD)-like tau phosphorylation in AD patient-derived neurons, we determined whether sAPPα also reduces GSK3ß-mediated tau phosphorylation. We initially found increased levels of inhibitory phosphorylation of GSK3ß (Ser9) in primary neurons from sAPPα over-expressing mice. Further, recombinant human sAPPα evoked the same phenomenon in SH-SY5Y cells. Further, in SH-SY5Y cells over-expressing BACE1, and HeLa cells over-expressing human tau, sAPPα reduced GSK3ß activity and tau phosphorylation. Importantly, the reductions in GSK3ß activity and tau phosphorylation elicited by sAPPα were prevented by BACE1 but not γ-secretase inhibition. In accord, AD mice over-expressing human sAPPα had less GSK3ß activity and tau phosphorylation compared with controls. These results implicate a direct relationship between APP ß-processing and GSK3ß-mediated tau phosphorylation and further define the central role of sAPPα in APP autoregulation and AD pathogenesis.


Asunto(s)
Precursor de Proteína beta-Amiloide/farmacología , Glucógeno Sintasa Quinasa 3/fisiología , Transducción de Señal/fisiología , Proteínas tau/antagonistas & inhibidores , Proteínas tau/metabolismo , Animales , Línea Celular Tumoral , Células Cultivadas , Relación Dosis-Respuesta a Droga , Glucógeno Sintasa Quinasa 3 beta , Humanos , Ratones , Ratones Endogámicos C57BL , Fosforilación/efectos de los fármacos , Fosforilación/fisiología , Transducción de Señal/efectos de los fármacos
16.
Rapid Commun Mass Spectrom ; 29(7): 601-10, 2015 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-26212277

RESUMEN

RATIONALE: For public security and safety, it is highly desirable to develop an ion source for the detection of explosives that is highly sensitive, compact in size, robust, and does not use any special carrier gases such as helium. In this work, a hollow cathode discharge (HCD) ion source was developed for the detection of explosives using ambient air as a carrier gas. METHODS: To detect nonvolatile and thermally unstable explosives with high sensitivities, a new HCD ion source was designed and coupled with an ion trap mass spectrometer. RESULTS: Five explosives--hexamethylene triperoxide diamine (HMTD), 1,3,5-trinitroperhydro-1,3,5-triazine (RDX), pentaerythritol tetranitrate (PETN), nitroglycerin (NG) and trinitrotoluene (TNT)--were detected with limits of detection of lower than ng. The intensities of the NO3(-) adduct ions with RDX, PETN, and NG showed a marked increase with increase in ion source pressure in the range of 1-28 Torr. CONCLUSIONS: Because the major NOx(-) ions (x = 2, 3) produced in the plasma act as reagent ions in ion-molecule reactions of explosives, air is best suited as a carrier gas for the detection of explosives. It is proposed that the NOx(-) (x = 2, 3) and O3 contributed to the formation of [TNT-H](-) and [TNT-NO](-) ions, via the reactions NOx(-) + TNT → [TNT-H](-) + HNOx and [TNT](-) + O3 → [TNT-NO](-) + NO2 + O2.

17.
Data Brief ; 57: 111014, 2024 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-39498159

RESUMEN

This data article describes a dataset derived from a comprehensive household survey aimed at understanding the dynamics of agrarian transformation and its impacts on rural community food security within the Lower Gangetic Basin, specifically along the Arial Khan River, Bangladesh. The survey was conducted as part of a doctoral research project and encompasses data collected from 250 households across a defined Mouza within the basin. The dataset provides detailed insights into various dimensions such as household demographics, land ownership and use, agricultural practices and transformations, socio-cultural and environmental factors, power dynamics, food security status, and the strategies employed to enhance food security. The survey employed a structured questionnaire comprising 78 questions distributed across seven distinct sections. Each section aimed to capture specific aspects of the household's agricultural and food security-related characteristics. Data collection was carried out from September 2023 to March 2024, following ethical guidelines approved by the University Malaysia Sabah, which included obtaining informed consent from all participants. This dataset is unique as it offers a granular look at the interplay between agricultural practices and food security in a region highly susceptible to the impacts of environmental change and economic transformations. The data are presented in a structured format across multiple Microsoft Excel sheets, which are comprehensively labeled to facilitate ease of access and analysis. The dataset is significant for researchers and policymakers focusing on agricultural development, food security, and rural development in South Asia. It provides a valuable resource for comparative studies, policy formulation, and in educational settings, aiming to address issues of sustainability and community resilience in agrarian societies.

18.
IEEE J Biomed Health Inform ; 28(7): 3798-3809, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38954560

RESUMEN

Major depressive disorder (MDD) is a chronic mental illness which affects people's well-being and is often detected at a later stage of depression with a likelihood of suicidal ideation. Early detection of MDD is thus necessary to reduce the impact, however, it requires monitoring vitals in daily living conditions. EEG is generally multi-channel and due to difficulty in signal acquisition, it is unsuitable for home-based monitoring, whereas, wearable sensors can collect single-channel ECG. Classical machine-learning based MDD detection studies commonly use various heart rate variability features. Feature generation, which requires domain knowledge, is often challenging, and requires computation power, often unsuitable for real time processing, MDDBranchNet is a proposed parallel-branch deep learning model for MDD binary classification from a single channel ECG which uses additional ECG-derived signals such as R-R signal and degree distribution time series of horizontal visibility graph. The use of derived branches was able to increase the model's accuracy by around 7%. An optimal 20-second overlapped segmentation of ECG recording was found to be beneficial with a 70% prediction threshold for maximum MDD detection with a minimum false positive rate. The proposed model evaluated MDD prediction from signal excerpts, irrespective of location (first, middle or last one-third of the recording), instead of considering the entire ECG signal with minimal performance variation stressing the idea that MDD phenomena are likely to manifest uniformly throughout the recording.


Asunto(s)
Aprendizaje Profundo , Trastorno Depresivo Mayor , Electrocardiografía , Procesamiento de Señales Asistido por Computador , Humanos , Electrocardiografía/métodos , Trastorno Depresivo Mayor/fisiopatología , Trastorno Depresivo Mayor/diagnóstico , Algoritmos , Adulto , Masculino
19.
J Am Soc Mass Spectrom ; 35(9): 2209-2221, 2024 Sep 04.
Artículo en Inglés | MEDLINE | ID: mdl-39164201

RESUMEN

Detection of illicit compounds like explosives and drugs of abuse at trace levels is crucial to provide public security and health safety. A dual ambient sampling system hollow cathode discharge (HCD) ion source was developed to investigate its performance. Here, trinitrotoluene (TNT), trinitrobenzene (TNB), hexamethylene triperoxide diamine (HMTD), and triacetone triperoxide (TATP) as explosives and methamphetamine (MA) as drugs of abuse were taken as model compounds. Two sample inlets, inlet-1 and inlet-2, are available for ambient sampling. In negative ion mode, N2 and air HCD plasmas are confined close to inlet-1, but in positive ion mode, they are confined close to inlet-2. Special design of the ion source makes it feasible to generate multiple ions from a single analyte, which assists in understanding the gas phase ionization mechanism. In negative ion mode, both TNT and TNB gave radical ions, [M]-•, as major ions for N2 HCD plasma as they were introduced via inlet-1 or inlet-2. TNB gave radical ions for air and N2 HCD plasmas, while TNT exhibited adduct ions, [TNT-H]-, by using air HCD plasma. In positive ion mode, HMTD gave [HMTD + H]+ m/z 209 ions, while TATP only produced adduct ions with ammonia, [TATP + NH4]+ m/z 240. Regardless of ion source inlet, MA showed protonated molecule ions, [MA + H]+ m/z 150. As analytes were introduced via inlet-1, the stability of the HCD background ion signal reduced, leading to a decrease in sensitivity. Unlike that in negative ion mode, introduction of ambient air in positive ion mode enhanced the sensitivity of the air HCD ion source through the formation of hydronium ions, which gave protonated molecule ions. Ionization mechanisms are also discussed.

20.
Heliyon ; 10(9): e29392, 2024 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-38694041

RESUMEN

Textile industries are now focusing on sustainable issues in manufacturing operations to save the environment. The study focuses on the use of cotton fibers (recycled) sourced from fabric (knitted) waste (pre-consumer) to manufacture elastic yarn (dual-core) for denim fabric. The study involves the production of yarns (dual-core) using a redesigned ring spinning method with different elastomeric components, including T400® (Polyethylene terephthalate)/Polytrimethylene terephthalate), Polybutylene terephthalate (PBT), Polyester (PES), Lycra® (elastane), virgin cotton and cotton (recycled) fiber. The study investigates various yarn (Ne 18/1) characteristics such as strength, IPI (imperfection index), elongation %, unevenness %, and hairiness. It is noticed that the elongation and strength of recycled yarn (double core) are lower and IPI (Imperfection index), unevenness %, and hairiness values are higher than 100 % cotton (virgin) yarn (double core). One-way ANOVA (statistical analysis) is employed to assess the significance of differences among yarns manufactured from various core materials and found significant variation for all characteristics. Additionally, the article introduces the MOORA (multi-objective optimization based on ratio analysis) technique as a decision-making tool to determine the best yarn among three alternatives (PES yarn, PBT yarn, and T400 yarn) based on their properties, considering attributes and finding T400 filament containing yarn as the best option. The study introduces a sustainable approach using recycled cotton in yarn (double core) production and employs decision-making tools to assess and rank the performance of different yarn alternatives.

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