Magnetic Signatures of Hydroxyl- and Water-Terminated Neutral and Tetra-Anionic Mn12 -Acetate.

We investigate the energetics and magnetic signatures of the parent molecular magnet Mn12 -Acetate [Mn12 O12 (COOR)16 (H2 O)4 ] and a chemically decomposed version of this structure, in which the four water molecules are converted to hydroxyl groups and hydrogen molecules. We determine electron addition and water decomposition energetics for this water-containing molecule using density-functional methods and include the recent Fermi-Löwdin-Orbital self-interaction correction. We find that it only costs 0.32 eV to add four electrons to the parent molecule. Furthermore, due to the strong Coulomb attractions between hydroxyl anions and the Mn cations, the energy cost for breaking the four coordinating water molecules into four coordinating hydroxyls and two hydrogen molecules is decreased in the tetra-anionic structure relative to the neutral structure. We calculate magnetic anisotropy barriers for the neutral molecule and the dehydrogenated tetra-anion and show that large changes in the magnetic anisotropy arise the strong attraction between the hydroxyl anions and four of the crown Mn cations. We suggest that the large changes in magnetic signals associated with the [Mn12 O12 (COOR)16 (HOH)4 ] to [Mn12 O12 (COOR)16 (OH- )4 + 2H2 ] decomposition could provide a nondestructive spectroscopic method for learning about water decomposition mechanisms in a class of realizable model catalytic systems that have been synthesized recently. © 2019 Wiley Periodicals, Inc.

Interpretation and Automatic Generation of Fermi-Orbital Descriptors.

We present an interpretation of Fermi-orbital descriptors (FODs) and argue that these descriptors carry chemical bonding information. We show that a bond order derived from these FODs agrees well with reference values, and highlight that optimized FOD positions used within the Fermi-Löwdin orbital self-interaction correction (FLO-SIC) method correspond to expectations from Linnett's double-quartet theory, which is an extension of Lewis theory. This observation is independent of the underlying exchange-correlation functional, which is shown using the local spin density approximation, the Perdew-Burke-Ernzerhof generalized gradient approximation (GGA), and the strongly constrained and appropriately normed meta-GGA. To make FOD positions generally accessible, we propose and discuss four independent methods for the generation of Fermi-orbital descriptors, their implementation as well as their advantages and drawbacks. In particular, we introduce a re-implementation of the electron force field, an approach based on the centers of mass of orbital densities, a Monte Carlo-based algorithm, and a method based on Lewis-like bonding information. All results are summarized with respect to future developments of FLO-SIC and related methods. © 2019 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc.

Analytic atomic gradients in the fermi-löwdin orbital self-interaction correction.

We derived, implemented, and thoroughly tested the complete analytic expression for atomic forces, consisting of the Hellmann-Feynman term and the Pulay correction, for the Fermi-Löwdin orbital self-interaction correction (FLO-SIC) method. Analytic forces are shown to be numerically accurate through an extensive comparison to forces obtained from finite differences. Using the analytic forces, equilibrium structures for a small set of molecules were obtained. This work opens the possibility of routine self-interaction free geometrical relaxations of molecules using the FLO-SIC method. © 2018 Wiley Periodicals, Inc.

Stretched or noded orbital densities and self-interaction correction in density functional theory.

Semilocal approximations to the density functional for the exchange-correlation energy of a many-electron system necessarily fail for lobed one-electron densities, including not only the familiar stretched densities but also the less familiar but closely related noded ones. The Perdew-Zunger (PZ) self-interaction correction (SIC) to a semilocal approximation makes that approximation exact for all one-electron ground- or excited-state densities and accurate for stretched bonds. When the minimization of the PZ total energy is made over real localized orbitals, the orbital densities can be noded, leading to energy errors in many-electron systems. Minimization over complex localized orbitals yields nodeless orbital densities, which reduce but typically do not eliminate the SIC errors of atomization energies. Other errors of PZ SIC remain, attributable to the loss of the exact constraints and appropriate norms that the semilocal approximations satisfy, suggesting the need for a generalized SIC. These conclusions are supported by calculations for one-electron densities and for many-electron molecules. While PZ SIC raises and improves the energy barriers of standard generalized gradient approximations (GGAs) and meta-GGAs, it reduces and often worsens the atomization energies of molecules. Thus, PZ SIC raises the energy more as the nodality of the valence localized orbitals increases from atoms to molecules to transition states. PZ SIC is applied here, in particular, to the strongly constrained and appropriately normed (SCAN) meta-GGA, for which the correlation part is already self-interaction-free. This property makes SCAN a natural first candidate for a generalized SIC.

Fermi-Löwdin orbital self-interaction corrected density functional theory: Ionization potentials and enthalpies of formation.

The Fermi-Löwdin orbital self-interaction correction (FLO-SIC) methodology is applied to atoms and molecules from the standard G2-1 test set. For the first time FLO-SIC results for the GGA-type PBE functional are presented. In addition, examples where FLO-SIC like any proper SIC provides qualitative improvements compared to standard DFT functionals are discussed in detail: the dissociation limit for H 2 + , the step-wise linearity behavior for fractional occupation, as well as the significant reduction of the error of static polarizabilities. Further, ionization potentials and enthalpies of formation obtained by means of the FLO-SIC DFT method are compared to other SIC variants and experimental values. The self-interaction correction gives significant improvements if used with the LDA functional but shows worse performance in case of enthalpies of formation if the PBE-GGA functional is used. The errors are analyzed and the importance of the overbinding of hydrogen is discussed. © 2018 Wiley Periodicals, Inc.

Self-consistent self-interaction corrected density functional theory calculations for atoms using Fermi-Löwdin orbitals: Optimized Fermi-orbital descriptors for Li-Kr.

In the Fermi-Löwdin orbital method for implementing self-interaction corrections (FLO-SIC) in density functional theory (DFT), the local orbitals used to make the corrections are generated in a unitary-invariant scheme via the choice of the Fermi orbital descriptors (FODs). These are M positions in 3-d space (for an M-electron system) that can be loosely thought of as classical electron positions. The orbitals that minimize the DFT energy including the SIC are obtained by finding optimal positions for the FODs. In this paper, we present optimized FODs for the atoms from Li-Kr obtained using an unbiased search method and self-consistent FLO-SIC calculations. The FOD arrangements display a clear shell structure that reflects the principal quantum numbers of the orbitals. We describe trends in the FOD arrangements as a function of atomic number. FLO-SIC total energies for the atoms are presented and are shown to be in close agreement with the results of previous SIC calculations that imposed explicit constraints to determine the optimal local orbitals, suggesting that FLO-SIC yields the same solutions for atoms as these computationally demanding earlier methods, without invoking the constraints.

Antibiotic mixture effects on growth of the leaf-shredding stream detritivore Gammarus fossarum.

Pharmaceuticals contribute greatly to human and animal health. Given their specific biological targets, pharmaceuticals pose a significant environmental risk by affecting organisms and ecosystem processes, including leaf-litter decomposition. Although litter decomposition is a central process in forest streams, the consequences of exposure to pharmaceuticals remain poorly known. The present study assessed the impact of antibiotics as an important class of pharmaceuticals on the growth of the leaf-shredding amphipod Gammarus fossarum over 24 days. Exposure scenarios involved an antibiotic mixture (i.e. sulfamethoxazole, trimethoprim, erythromycin-H2O, roxithromycin, clarithromycin) at 0, 2 and 200 µg/L to assess impacts resulting from exposure to both water and food. The antibiotics had no effect on either leaf-associated fungal biomass or bacterial abundance. However, modification of leaf quality (e.g. through shifts in leaf-associated microbial communities) may have triggered faster growth of gammarids (assessed in terms of body mass gain) at the low antibiotic concentration relative to the control. At 200 µg/L, however, gammarid growth was not stimulated. This outcome might be due to a modified ability of the gut microflora to assimilate nutrients and carbon. Furthermore, the observed lack of increases in the diameter of the gammarids' peduncles, despite an increase in gammarid mass, suggests antibiotic-induced effects in the moulting cycle. Although the processes responsible for the observed effects have not yet been identified, these results suggest a potential role of food-quality, gammarid gut microflora and alteration in the moulting cycle in mediating impacts of antibiotics on these detritivores and the leaf decomposition process in streams.

Acute Toxicity and Environmental Risks of Five Veterinary Pharmaceuticals for Aquatic Macroinvertebrates.

Due to the high use of antibiotics and antiparasitics for the treatment of livestock, there is concern about the potential impacts of the release of these compounds into freshwater ecosystems. In this context, the present study quantified the acute toxicity of two antibiotics (sulfadiazine and sulfadimidine), and three antiparasitic agents (flubendazole, fenbendazole, ivermectin) for nine freshwater invertebrate species. These experiments revealed a low degree of toxicity for the sulfonamide antibiotics, with limited implications in the survival of all test species at the highest test concentrations (50 and 100 mg/L). In contrast, all three antiparasitic agents indicated on the basis of their acute toxicity risks for the aquatic environment. Moreover, chronic toxicity data from the literature for antiparasitics, including effects on reproduction in daphnids, support the concern about the integrity of aquatic ecosystems posed by releases of these compounds. Thus, these pharmaceuticals warrant further careful consideration by environmental risk managers.

Phthalocyanine dimers in a blend: spectroscopic and theoretical studies of MnPc(δ +)/F(16)CoPc(δ -).

We have prepared mixed phthalocyanine films out of MnPc and F(16)CoPc, which were characterized by means of photoemission spectroscopy and electron energy-loss spectroscopy. Our data reveal the formation of MnPc/F(16)CoPc charge transfer dimers in analogy to the related heterojunction. The electronic excitation spectrum of these blends is characterized by a new low energy excitation at 0.6 eV. Density functional theory calculations show that the new signal is caused by a strong absorption between the states of the interface induced two level system.

Hybrid states and charge transfer at a phthalocyanine heterojunction: MnPc(δ+)/F16CoPc(δ-).

Using photoelectron spectroscopy we demonstrate charge transfer at an interface between two well-known transition metal phthalocyanines, MnPc and F16CoPc, resulting in charged MnPc(δ+) and F16CoPc(δ-) species. Moreover, the transferred charge is substantially confined to the two transition metal centers. Density functional theory calculations reveal that a hybrid state is formed between the two types of phthalocyanines, which causes this charge transfer. For the hybrid state the Mn 3d(xz) interacts with the Co 3d(z2) orbital leading to a two-level system. As only the lower of the two hybrid states is occupied, the charge is directly transferred to the Co 3d(z2) orbital.

Stabilization of hypophosphite in the binding pocket of a dinuclear macrocyclic complex: synthesis, structure, and properties of [Ni(2)L(µ-O(2)PH(2))]BPh(4) (L = N(6)S(2) donor ligand).

The dinickel(II) complex [Ni2L(ClO4)]ClO4 (1), where L(2-) represents a 24-membered macrocyclic hexaamine-dithiophenolate ligand, reacts with [nBu4N]H2PO2 to form the hypophosphito-bridged complex [Ni2L(µ-O2PH2)](+), which can be isolated as an air-stable perchlorate [Ni2L(µ-O2PH2)]ClO4 (2) or tetraphenylborate [Ni2L(µ-O2PH2)]BPh4 (3) salt. 3·MeCN crystallizes in the triclinic space group P1̅. The bisoctahedral [Ni2L(µ-O2PH2)](+) cation has a N3Ni(µ1,3-O2PH2)(µ-S)2NiN3 core structure with the hypophosphito ligand attached to the two Ni(II) ions in a µ1,3-bridging mode. The hypophosphito ligand is readily replaced by carboxylates, in agreement with a higher affinity of the [Ni2L](2+) dication for more basic oxoanions. Treatment of [Ni2L(µ-O2PH2)]ClO4 with H2O2 or MCPBA results in the oxidation of the bridging thiolato to sulfonato groups. The hypophosphito group is not oxidized under these conditions due to the steric protection offered by the supporting ligand. An analysis of the temperature-dependent magnetic susceptibility data for 3 reveals the presence of ferromagnetic exchange interactions between the Ni(ii) (S = 1) ions with a value for the magnetic exchange coupling constant J of +22 cm(-1) (H = -2JS1S2). These results are additionally supported by DFT (density functional theory) calculations.

Electronic properties of spiro compounds for organic electronics.

The electronic properties of p-type, n-type, and ambipolar spiro materials have been investigated using a combination of photoemission spectroscopy, electron energy-loss spectroscopy, and density functional based calculations. Our results provide insight into the occupied density of states as well as the electronic excitation spectra. Comparison of experimental and theoretical data allows the identification of the orbitals responsible for charge transport and optical properties.

Electronic structure and transport properties of coupled CdS/ZnSe quantum dots.

Electronic structure and transport characteristics of coupled CdS and ZnSe quantum dots are studied using density functional theory and non equilibrium Greens function method respectively. Our investigations show that in these novel coupled dots, the Frontier occupied and unoccupied molecular orbitals are spatially located in two different parts, thereby indicating the possibility of asymmetry in electronic transport. We have calculated electronic transport through the coupled quantum dot by varying the coupling strength between the individual quantum dots in the limits of weak and strong coupling. Calculations reveal asymmetric current vs voltage curves in both the limits indicating the rectifying properties of the coupled quantum dots. Additionally we discuss the possibility to tune the switching behavior of the coupled dots by different gate geometries.

Antibiotics as a chemical stressor affecting an aquatic decomposer-detritivore system.

Recent evidence indicates that a variety of antibiotic residues may affect the integrity of streams located downstream from wastewater treatment plants. Aquatic communities comprising bacterial and fungal decomposers and invertebrate detritivores (shredders) play an important role in the decomposition of allochthonous leaf litter, which acts as a primary energy source for small running waters. The aim of the present study was to assess whether an antibiotic mixture consisting of sulfamethoxazole, trimethoprim, erythromycin-H2O, roxithromycin, and clarithromycin has an effect on such a decomposer-detritivore system. Leaf discs were exposed to these antibiotics (total concentration of 2 or 200 microg/L) for approximately 20 d before offering these discs and corresponding control discs to an amphipod shredder, Gammarus fossarum, in a food choice experiment. Gammarus preferred the leaf discs conditioned in the presence of the antibiotic mixture at 200 microg/L over the control discs (pair-wise t test; p = 0.006). A similar tendency, while not significant, was observed for leaves conditioned with antibiotics at a concentration of 2 microg/L. The number of bacteria associated with leaves did not differ between treatments at either antibiotic concentration (t test; p = 0.57). In contrast, fungal biomass (measured as ergosterol) was significantly higher in the 200 microg/L treatment (t test; p = 0.038), suggesting that the preference of Gammarus may be related to a shift in fungal communities. Overall these results indicate that mixtures of antibiotics may disrupt important ecosystem processes such as organic matter flow in stream ecosystems, although effects are likely to be weak at antibiotic concentrations typical of streams receiving wastewater treatment plant effluents.

Inhibition of rainbow trout acetylcholinesterase by aqueous and suspended particle-associated organophosphorous insecticides.

Spraydrift and edge-of-field runoff are important routes of pesticide entry into streams. Pesticide contamination originating from spraydrift usually resides in the water phase, while pesticides in contaminated runoff are to a large extent associated with suspended particles (SPs). The effects of two organophosphorous insecticides (OPs), chloropyrifos (CPF) and azinphos-methyl (AZP), on acetylcholinesterase (AChE) activity in rainbow trout were compared between two exposure scenarios, simulating spraydrift- and runoff-borne contamination events in the Lourens River (LR), Western Cape, South Africa. NOECs of brain AChE inhibition, determined after 1h of exposure followed by 24h of recovery, were 0.33microgl(-1) for aqueous CPF, 200mgkg(-1) for SP-associated CPF and 20mgkg(-1) for SP-associated AZP (at 0.5gl(-1) SP). The highest aqueous AZP concentration tested (3.3microgl(-1)) was without significant effects. Previously reported peak levels of aqueous CPF in the LR ( approximately 0.2microgl(-1)) are close to its NOEC (this study), suggesting a significant toxicological risk to fish in the LR. By contrast, reported levels of SP-associated OPs in the LR are 20-200-fold lower than their NOECs (this study). In a comparative in situ study, trout were exposed for seven days at agricultural (LR2, LR3) and upstream reference (LR1) sites. No runoff occurred during the study. Brain AChE was significantly inhibited at LR3. However, OP levels at LR3 (CPF 0.01microgl(-1); AZP 0.14microgl(-1)) were minor compared to concentrations having effects in the laboratory (see above). Additionally, muscle AChE activity was significantly higher in caged trout from LR1 than in animals maintained in laboratory tanks.

Induction of the hypoxia-inducible factor system by low levels of heat shock protein 90 inhibitors.

The heterodimeric hypoxia-inducible factor-1 (HIF-1) is involved in key steps of tumor progression and therapy resistance and thus represents an attractive antitumor target. Because heat shock protein 90 (HSP90) plays an important role in HIF-1alpha protein stabilization and because HSP90 inhibitors are currently being tested in clinical phase I trials for anticancer treatment, we investigated their role as anti-HIF-1alpha agents. Surprisingly, low-dose (5-30 nmol/L) treatment of HeLa cells with three different HSP90 inhibitors (17-AAG, 17-DMAG, and geldanamycin) increased HIF-1-dependent reporter gene activity, whereas higher doses (1-3 micromol/L) resulted in a reduction of hypoxia-induced HIF-1 activity. In line with these data, low-dose treatment with HSP90 inhibitors increased and high-dose treatment reduced hypoxic HIF-1alpha protein levels, respectively. HIF-1alpha protein stabilized by HSP90 inhibitors localized to the nucleus. As a result of HSP90-modulated HIF-1 activity, the levels of the tumor-relevant HIF-1 downstream targets carbonic anhydrase IX, prolyl-4-hydroxylase domain protein 3, and vascular endothelial growth factor were increased or decreased after low-dose or high-dose treatment, respectively. Bimodal effects of 17-AAG on vessel formation were also seen in the chick chorioallantoic membrane angiogenesis assay. In summary, these results suggest that dosage will be a critical factor in the treatment of tumor patients with HSP90 inhibitors.

Electronic structure, transport, and collective effects in molecular layered systems.

The great potential of organic heterostructures for organic device applications is exemplified by the targeted engineering of the electronic properties of phthalocyanine-based systems. The transport properties of two different phthalocyanine systems, a pure copper phthalocyanine (CoPc) and a flourinated copper phthalocyanine-manganese phthalocyanine (F16CoPc/MnPc) heterostructure, are investigated by means of density functional theory (DFT) and the non-equilibrium Green's function (NEGF) approach. Furthermore, a master-equation-based approach is used to include electronic correlations beyond the mean-field-type approximation of DFT. We describe the essential theoretical tools to obtain the parameters needed for the master equation from DFT results. Finally, an interacting molecular monolayer is considered within a master-equation approach.

Symmetry Breaking within Fermi-Löwdin Orbital Self-Interaction Corrected Density Functional Theory.

Fermi-Löwdin orbital self-interaction corrected density functional theory (FLO-SIC DFT) is applied to C3H5, NO3-, O3, and CH3. In general our results indicate that FLO-SIC does favor symmetric setups for molecules with nontrivial chemical bonding. Further we discuss two types of possible symmetry breaking. In the case of O3 a ground state density that breaks symmetry can be found for the symmetric molecular geometry that may be caused by insufficient treatment of correlation energy. The CH3 radical presents a second type of symmetry breaking were the lowest energy geometry becomes distorted. The latter highlights the importance of further development of approximate DFT functionals as well as further extensions of the FLO-SIC method to overcome such nonphysical artifacts.

Charge transfer from and to manganese phthalocyanine: bulk materials and interfaces.

Manganese phthalocyanine (MnPc) is a member of the family of transition-metal phthalocyanines, which combines interesting electronic behavior in the fields of organic and molecular electronics with local magnetic moments. MnPc is characterized by hybrid states between the Mn 3d orbitals and the π orbitals of the ligand very close to the Fermi level. This causes particular physical properties, different from those of the other phthalocyanines, such as a rather small ionization potential, a small band gap and a large electron affinity. These can be exploited to prepare particular compounds and interfaces with appropriate partners, which are characterized by a charge transfer from or to MnPc. We summarize recent spectroscopic and theoretical results that have been achieved in this regard.

Magnetic superexchange interactions: trinuclear bis(oxamidato) versus bis(oxamato) type complexes.

The diethyl ester of o-phenylenebis(oxamic acid) (opbaH2Et2) was treated with an excess of RNH2 in MeOH to cause the exclusive formation of the respective o-phenylenebis(N(R)-oxamides) (opboH4R2, R = Me , Et , (n)Pr ) in good yields. Treatment of with half an equivalent of [Cu2(AcO)4(H2O)2] or one equivalent of [Ni(AcO)2(H2O)4] followed by the addition of four equivalents of [(n)Bu4N]OH resulted in the formation of mononuclear bis(oxamidato) type complexes [(n)Bu4N]2[M(opboR2)] (M = Ni, R = Me , Et , (n)Pr ; M = Cu, R = Me , Et , (n)Pr ). By addition of two equivalents of [Cu(pmdta)(NO3)2] to MeCN solutions of , novel trinuclear complexes [Cu3(opboR2)(L)2](NO3)2 (L = pmdta, R = Me , Et , (n)Pr ) could be obtained. Compounds have been characterized by elemental analysis and NMR/IR spectroscopy. Furthermore, the solid state structures of and have been determined by single-crystal X-ray diffraction studies. By controlled cocrystallization, diamagnetically diluted and (1%) in the host lattice of and (99%) (@ and @), respectively, in the form of single crystals have been made available, allowing single crystal ESR studies to extract all components of the g-factor and the tensors of onsite (Cu)A and transferred (N)A hyperfine (HF) interaction. From these studies, the spin density distribution of the [Cu(opboEt2)](2-) and [Cu(opbo(n)Pr2)](2-) complex fragments of and , respectively, could be determined. Additionally, as a single crystal ENDOR measurement of @ revealed the individual HF tensors of the N donor atoms to be unequal, individual estimates of the spin densities on each N donor atom were made. The magnetic properties of were studied by susceptibility measurements versus temperature to give J values varying from -96 cm(-1) () over -104 cm(-1) () to -132 cm(-1) (). These three trinuclear Cu(II)-containing bis(oxamidato) type complexes exhibit J values which are comparable to and slightly larger in magnitude than those of related bis(oxamato) type complexes. In a summarizing discussion involving experimentally obtained ESR results (spin density distribution) of and , the geometries of the terminal [Cu(pmdta)](2+) fragments of determined by crystallographic studies, together with accompanying quantum chemical calculations, an approach is derived to explain these phenomena and to conclude if the spin density distribution of mononuclear bis(oxamato)/bis(oxamidato) type complexes could be a measure of the J couplings of corresponding trinuclear complexes.