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1.

Gene inactivation and its implications for annotation in the era of personal genomics.

Balasubramanian, Suganthi; Habegger, Lukas; Frankish, Adam; MacArthur, Daniel G; Harte, Rachel; Tyler-Smith, Chris; Harrow, Jennifer; Gerstein, Mark.

Genes Dev; 25(1): 1-10, 2011 Jan 01.

Artículo en Inglés | MEDLINE | ID: mdl-21205862

2.

The UCSC Genome Browser database: 2016 update.

Speir, Matthew L; Zweig, Ann S; Rosenbloom, Kate R; Raney, Brian J; Paten, Benedict; Nejad, Parisa; Lee, Brian T; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S; Heitner, Steve; Harte, Rachel A; Haeussler, Maximilian; Guruvadoo, Luvina; Fujita, Pauline A; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P; Haussler, David; Kuhn, Robert M; Kent, W James.

Nucleic Acids Res; 44(D1): D717-25, 2016 Jan 04.

Artículo en Inglés | MEDLINE | ID: mdl-26590259

3.

The UCSC Genome Browser database: 2015 update.

Rosenbloom, Kate R; Armstrong, Joel; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Dreszer, Timothy R; Fujita, Pauline A; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A; Heitner, Steve; Hickey, Glenn; Hinrichs, Angie S; Hubley, Robert; Karolchik, Donna; Learned, Katrina; Lee, Brian T; Li, Chin H; Miga, Karen H; Nguyen, Ngan; Paten, Benedict; Raney, Brian J; Smit, Arian F A; Speir, Matthew L; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W James.

Nucleic Acids Res; 43(Database issue): D670-81, 2015 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-25428374

4.

Comparative analysis of pseudogenes across three phyla.

Sisu, Cristina; Pei, Baikang; Leng, Jing; Frankish, Adam; Zhang, Yan; Balasubramanian, Suganthi; Harte, Rachel; Wang, Daifeng; Rutenberg-Schoenberg, Michael; Clark, Wyatt; Diekhans, Mark; Rozowsky, Joel; Hubbard, Tim; Harrow, Jennifer; Gerstein, Mark B.

Proc Natl Acad Sci U S A; 111(37): 13361-6, 2014 Sep 16.

Artículo en Inglés | MEDLINE | ID: mdl-25157146

5.

The UCSC Genome Browser database: 2014 update.

Karolchik, Donna; Barber, Galt P; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S; Diekhans, Mark; Dreszer, Timothy R; Fujita, Pauline A; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A; Heitner, Steve; Hinrichs, Angie S; Learned, Katrina; Lee, Brian T; Li, Chin H; Raney, Brian J; Rhead, Brooke; Rosenbloom, Kate R; Sloan, Cricket A; Speir, Matthew L; Zweig, Ann S; Haussler, David; Kuhn, Robert M; Kent, W James.

Nucleic Acids Res; 42(Database issue): D764-70, 2014 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-24270787

6.

Current status and new features of the Consensus Coding Sequence database.

Farrell, Catherine M; O'Leary, Nuala A; Harte, Rachel A; Loveland, Jane E; Wilming, Laurens G; Wallin, Craig; Diekhans, Mark; Barrell, Daniel; Searle, Stephen M J; Aken, Bronwen; Hiatt, Susan M; Frankish, Adam; Suner, Marie-Marthe; Rajput, Bhanu; Steward, Charles A; Brown, Garth R; Bennett, Ruth; Murphy, Michael; Wu, Wendy; Kay, Mike P; Hart, Jennifer; Rajan, Jeena; Weber, Janet; Snow, Catherine; Riddick, Lillian D; Hunt, Toby; Webb, David; Thomas, Mark; Tamez, Pamela; Rangwala, Sanjida H; McGarvey, Kelly M; Pujar, Shashikant; Shkeda, Andrei; Mudge, Jonathan M; Gonzalez, Jose M; Gilbert, James G R; Trevanion, Stephen J; Baertsch, Robert; Harrow, Jennifer L; Hubbard, Tim; Ostell, James M; Haussler, David; Pruitt, Kim D.

Nucleic Acids Res; 42(Database issue): D865-72, 2014 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-24217909

7.

GENCODE: the reference human genome annotation for The ENCODE Project.

Harrow, Jennifer; Frankish, Adam; Gonzalez, Jose M; Tapanari, Electra; Diekhans, Mark; Kokocinski, Felix; Aken, Bronwen L; Barrell, Daniel; Zadissa, Amonida; Searle, Stephen; Barnes, If; Bignell, Alexandra; Boychenko, Veronika; Hunt, Toby; Kay, Mike; Mukherjee, Gaurab; Rajan, Jeena; Despacio-Reyes, Gloria; Saunders, Gary; Steward, Charles; Harte, Rachel; Lin, Michael; Howald, Cédric; Tanzer, Andrea; Derrien, Thomas; Chrast, Jacqueline; Walters, Nathalie; Balasubramanian, Suganthi; Pei, Baikang; Tress, Michael; Rodriguez, Jose Manuel; Ezkurdia, Iakes; van Baren, Jeltje; Brent, Michael; Haussler, David; Kellis, Manolis; Valencia, Alfonso; Reymond, Alexandre; Gerstein, Mark; Guigó, Roderic; Hubbard, Tim J.

Genome Res; 22(9): 1760-74, 2012 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-22955987

8.

ENCODE data in the UCSC Genome Browser: year 5 update.

Rosenbloom, Kate R; Sloan, Cricket A; Malladi, Venkat S; Dreszer, Timothy R; Learned, Katrina; Kirkup, Vanessa M; Wong, Matthew C; Maddren, Morgan; Fang, Ruihua; Heitner, Steven G; Lee, Brian T; Barber, Galt P; Harte, Rachel A; Diekhans, Mark; Long, Jeffrey C; Wilder, Steven P; Zweig, Ann S; Karolchik, Donna; Kuhn, Robert M; Haussler, David; Kent, W James.

Nucleic Acids Res; 41(Database issue): D56-63, 2013 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-23193274

9.

The UCSC Genome Browser database: extensions and updates 2013.

Meyer, Laurence R; Zweig, Ann S; Hinrichs, Angie S; Karolchik, Donna; Kuhn, Robert M; Wong, Matthew; Sloan, Cricket A; Rosenbloom, Kate R; Roe, Greg; Rhead, Brooke; Raney, Brian J; Pohl, Andy; Malladi, Venkat S; Li, Chin H; Lee, Brian T; Learned, Katrina; Kirkup, Vanessa; Hsu, Fan; Heitner, Steve; Harte, Rachel A; Haeussler, Maximilian; Guruvadoo, Luvina; Goldman, Mary; Giardine, Belinda M; Fujita, Pauline A; Dreszer, Timothy R; Diekhans, Mark; Cline, Melissa S; Clawson, Hiram; Barber, Galt P; Haussler, David; Kent, W James.

Nucleic Acids Res; 41(Database issue): D64-9, 2013 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-23155063

10.

The UCSC Genome Browser database: extensions and updates 2011.

Dreszer, Timothy R; Karolchik, Donna; Zweig, Ann S; Hinrichs, Angie S; Raney, Brian J; Kuhn, Robert M; Meyer, Laurence R; Wong, Mathew; Sloan, Cricket A; Rosenbloom, Kate R; Roe, Greg; Rhead, Brooke; Pohl, Andy; Malladi, Venkat S; Li, Chin H; Learned, Katrina; Kirkup, Vanessa; Hsu, Fan; Harte, Rachel A; Guruvadoo, Luvina; Goldman, Mary; Giardine, Belinda M; Fujita, Pauline A; Diekhans, Mark; Cline, Melissa S; Clawson, Hiram; Barber, Galt P; Haussler, David; James Kent, W.

Nucleic Acids Res; 40(Database issue): D918-23, 2012 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-22086951

11.

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

Rosenbloom, Kate R; Dreszer, Timothy R; Long, Jeffrey C; Malladi, Venkat S; Sloan, Cricket A; Raney, Brian J; Cline, Melissa S; Karolchik, Donna; Barber, Galt P; Clawson, Hiram; Diekhans, Mark; Fujita, Pauline A; Goldman, Mary; Gravell, Robert C; Harte, Rachel A; Hinrichs, Angie S; Kirkup, Vanessa M; Kuhn, Robert M; Learned, Katrina; Maddren, Morgan; Meyer, Laurence R; Pohl, Andy; Rhead, Brooke; Wong, Matthew C; Zweig, Ann S; Haussler, David; Kent, W James.

Nucleic Acids Res; 40(Database issue): D912-7, 2012 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-22075998

12.

The UCSC Genome Browser database: update 2011.

Fujita, Pauline A; Rhead, Brooke; Zweig, Ann S; Hinrichs, Angie S; Karolchik, Donna; Cline, Melissa S; Goldman, Mary; Barber, Galt P; Clawson, Hiram; Coelho, Antonio; Diekhans, Mark; Dreszer, Timothy R; Giardine, Belinda M; Harte, Rachel A; Hillman-Jackson, Jennifer; Hsu, Fan; Kirkup, Vanessa; Kuhn, Robert M; Learned, Katrina; Li, Chin H; Meyer, Laurence R; Pohl, Andy; Raney, Brian J; Rosenbloom, Kate R; Smith, Kayla E; Haussler, David; Kent, W James.

Nucleic Acids Res; 39(Database issue): D876-82, 2011 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-20959295

13.

The completion of the Mammalian Gene Collection (MGC).

Temple, Gary; Gerhard, Daniela S; Rasooly, Rebekah; Feingold, Elise A; Good, Peter J; Robinson, Cristen; Mandich, Allison; Derge, Jeffrey G; Lewis, Jeanne; Shoaf, Debonny; Collins, Francis S; Jang, Wonhee; Wagner, Lukas; Shenmen, Carolyn M; Misquitta, Leonie; Schaefer, Carl F; Buetow, Kenneth H; Bonner, Tom I; Yankie, Linda; Ward, Ming; Phan, Lon; Astashyn, Alex; Brown, Garth; Farrell, Catherine; Hart, Jennifer; Landrum, Melissa; Maidak, Bonnie L; Murphy, Michael; Murphy, Terence; Rajput, Bhanu; Riddick, Lillian; Webb, David; Weber, Janet; Wu, Wendy; Pruitt, Kim D; Maglott, Donna; Siepel, Adam; Brejova, Brona; Diekhans, Mark; Harte, Rachel; Baertsch, Robert; Kent, Jim; Haussler, David; Brent, Michael; Langton, Laura; Comstock, Charles L G; Stevens, Michael; Wei, Chaochun; van Baren, Marijke J; Salehi-Ashtiani, Kourosh.

Genome Res; 19(12): 2324-33, 2009 Dec.

Artículo en Inglés | MEDLINE | ID: mdl-19767417

14.

The UCSC Genome Browser database: update 2010.

Rhead, Brooke; Karolchik, Donna; Kuhn, Robert M; Hinrichs, Angie S; Zweig, Ann S; Fujita, Pauline A; Diekhans, Mark; Smith, Kayla E; Rosenbloom, Kate R; Raney, Brian J; Pohl, Andy; Pheasant, Michael; Meyer, Laurence R; Learned, Katrina; Hsu, Fan; Hillman-Jackson, Jennifer; Harte, Rachel A; Giardine, Belinda; Dreszer, Timothy R; Clawson, Hiram; Barber, Galt P; Haussler, David; Kent, W James.

Nucleic Acids Res; 38(Database issue): D613-9, 2010 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-19906737

15.

The ENCODE Project at UC Santa Cruz.

Thomas, Daryl J; Rosenbloom, Kate R; Clawson, Hiram; Hinrichs, Angie S; Trumbower, Heather; Raney, Brian J; Karolchik, Donna; Barber, Galt P; Harte, Rachel A; Hillman-Jackson, Jennifer; Kuhn, Robert M; Rhead, Brooke L; Smith, Kayla E; Thakkapallayil, Archana; Zweig, Ann S; Haussler, David; Kent, W James.

Nucleic Acids Res; 35(Database issue): D663-7, 2007 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-17166863

16.

RACK1: a novel substrate for the Src protein-tyrosine kinase.

Chang, Betty Y; Harte, Rachel A; Cartwright, Christine A.

Oncogene; 21(50): 7619-29, 2002 Oct 31.

Artículo en Inglés | MEDLINE | ID: mdl-12400005

17.

Identification of cell surface and secreted proteins essential for tumor cell survival using a genetic suppressor element screen.

Gelman, Marina S; Ye, X Katherine; Stull, Robert; Suhy, David; Jin, Liang; Ng, Dean; Than, Bruce; Ji, May; Pan, Alison; Perez, Paul; Sun, Yan; Yeung, Patricia; Garcia, Luz Maria; Harte, Rachel; Lu, Yan; Lamar, Elizabeth; Tavassoli, Roya; Kennedy, Scot; Osborn, Stephen; Chin, Daniel J; Meshaw, Kay; Holzmayer, Tatyana A; Axenovich, Sergey A; Abo, Arie.

Oncogene; 23(49): 8158-70, 2004 Oct 21.

Artículo en Inglés | MEDLINE | ID: mdl-15361835

18.

Expression analysis of secreted and cell surface genes of five transformed human cell lines and derivative xenograft tumors.

Stull, Robert A; Tavassoli, Roya; Kennedy, Scot; Osborn, Steve; Harte, Rachel; Lu, Yan; Napier, Cheryl; Abo, Arie; Chin, Daniel J.

BMC Genomics; 6: 55, 2005 Apr 18.

Artículo en Inglés | MEDLINE | ID: mdl-15836779

19.

Genome-wide detection and family clustering of ion channels.

Harte, Rachel; Ouzounis, Christos A.

FEBS Lett; 514(2-3): 129-34, 2002 Mar 13.

Artículo en Inglés | MEDLINE | ID: mdl-11943138

20.

RACK1 inhibits the serum- and anchorage-independent growth of v-Src transformed cells.

Mamidipudi, Vidya; Chang, Betty Y; Harte, Rachel A; Lee, Kelly C; Cartwright, Christine A.

FEBS Lett; 567(2-3): 321-6, 2004 Jun 04.

Artículo en Inglés | MEDLINE | ID: mdl-15178345

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