The Gene Ontology (GO) database and informatics resource.

The Gene Ontology (GO) project (http://www. geneontology.org/) provides structured, controlled vocabularies and classifications that cover several domains of molecular and cellular biology and are freely available for community use in the annotation of genes, gene products and sequences. Many model organism databases and genome annotation groups use the GO and contribute their annotation sets to the GO resource. The GO database integrates the vocabularies and contributed annotations and provides full access to this information in several formats. Members of the GO Consortium continually work collectively, involving outside experts as needed, to expand and update the GO vocabularies. The GO Web resource also provides access to extensive documentation about the GO project and links to applications that use GO data for functional analyses.

Phase-locked widely tunable optical single-frequency generator based on a femtosecond comb.

We present an arbitrary optical single-frequency generator based on a femtosecond optical frequency comb. The functions of this device are comparable to those of a radio-frequency synthesizer. However, this device operates at hundreds of terahertz. The absolute frequency accuracy of this synthesizer is approximately 1 kHz at a 282 THz carrier frequency. The stability is approximately 2 x 10(-14) at 100 s, and the tuning speed exceeds 30 GHz/s. This source demonstrates the integration of a phase-locked optical comb into a versatile and easy-to-use system for the generation of tunable, absolute optical frequencies. By using downconversion, one could generate tunable terahertz frequencies that are phase locked to a microwave reference, such as a Cs atomic clock, and high-precision interferometry could benefit greatly from the stability and accuracy of this widely tunable source.

Saccharomyces cerevisiae Dmc1 protein promotes renaturation of single-strand DNA (ssDNA) and assimilation of ssDNA into homologous super-coiled duplex DNA.

Dmc1 and Rad51 are eukaryotic RecA homologues that are involved in meiotic recombination. The expression of Dmc1 is limited to meiosis, whereas Rad51 is expressed in mitosis and meiosis. Dmc1 and Rad51 have unique and overlapping functions during meiotic recombination. Here we report the purification of the Dmc1 protein from the budding yeast Saccharomyces cerevisiae and present basic characterization of its biochemical activity. The protein has a weak DNA-dependent ATPase activity and binds both single-strand DNA (ssDNA) and double-strand DNA. Electrophoretic mobility shift assays suggest that DNA binding by Dmc1 is cooperative. Dmc1 renatures linearized plasmid DNA with first order reaction kinetics and without requiring added nucleotide cofactor. In addition, Dmc1 catalyzes strand assimilation of ssDNA oligonucleotides into homologous supercoiled duplex DNA in a reaction promoted by ATP or the non-hydrolyzable ATP analogue AMP-PNP.