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1.
Adv Exp Med Biol ; 1208: 99-114, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34260024

RESUMEN

Autophagy, a highly conserved metabolic process in eukaryotes, is a widespread degradation/recycling system. However, there are significant differences (as well as similarities) between autophagy in animals, plants, and microorganisms such as yeast. While the overall process of autophagy is similar between different organisms, the molecular mechanisms and the pathways regulating autophagy are different, which is manifested in the diversity and specificity of the genes involved. In general, the autophagy system is much more complicated in mammals than in yeast. In addition, there are some differences in the types of autophagy present in animals, plants, and microorganisms. For example, there is a unique type of selective autophagy called the cytoplasm-to-vacuole targeting (Cvt) pathway in yeast, and a special kind of autophagy, chloroplast autophagy, exists in plants. In conclusion, although autophagy is highly conserved in eukaryotes, there are still many differences between autophagy of animals, plants, and microorganisms.


Asunto(s)
Autofagia , Vacuolas , Animales , Citoplasma , Mamíferos/genética , Saccharomyces cerevisiae
2.
J Clin Lab Anal ; 34(6): e23216, 2020 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-31967356

RESUMEN

BACKGROUND: Clinically, D-dimer (DD) levels are mainly used to exclude diseases such as deep venous thrombosis (DVT). In clinical testing, DD assays can be subjected to interference that may cause false results, which directly affect the clinical diagnosis. Our hypothesis was that the 95% confidence intervals (CIs) of the fibrin degradation product (FDP)/DD and fibrinogen (Fib)/DD ratios were used to identify these false results and corrected via multiple dilutions. METHODS: In total, 16 776 samples were divided into three groups according to the DD levels detected by Sysmex CS5100 and CA7000: Group A, DD ≥ 2.0 µg/mL fibrinogen equivalent unit (FEU); group B, 0.5 < DD < 2.0 µg/mL FEU; and group C, DD ≤ 0.5 µg/mL FEU. The 95% CIs of the FDP/DD and Fib/DD ratios were calculated. Six abnormal DD results were found according to the 95% CIs. For verification, we performed multiple dilutions, compared the results with those of other instruments, and tested the addition of heterophilic blocking reagent (HBR). RESULTS: The median and 95% CI of the FDP/DD ratio were 3.76 and 2.25-8.15 in group A, 5.63 and 2.86-10.58 in group B, 10.23 and 0.91-47.71 in groups C, respectively. For the Fib/DD ratio, the 95% CIs was 0.02-2.21 in group A, 0.68-8.15 in group B, and 3.82-55.27 in groups C. Six abnormal results were identified after multiple dilutions, by comparison with other detection systems, and after HBR addition. CONCLUSIONS: The FDP/DD ratio is more reliable for identifying false results. If the FDP/DD ratio falls outside the 95% CI, it should be verified by different methods.


Asunto(s)
Productos de Degradación de Fibrina-Fibrinógeno/análisis , Inmunoturbidimetría/métodos , Adulto , Artefactos , Intervalos de Confianza , Reacciones Falso Positivas , Femenino , Humanos , Inmunoturbidimetría/normas , Masculino , Persona de Mediana Edad , Embarazo , Trombosis de la Vena/sangre
3.
Environ Microbiol ; 21(8): 3027-3045, 2019 08.
Artículo en Inglés | MEDLINE | ID: mdl-31145534

RESUMEN

The Skp1-Cul1-F-box-protein (SCF) ubiquitin ligases are important parts of the ubiquitin system controlling many cellular biological processes in eukaryotes. However, the roles of SCF ubiquitin ligases remain unclear in phytopathogenic Magnaporthe oryzae. Here, we cloned 24 F-box proteins and confirmed that 17 proteins could interact with MoSkp1, showing their potential to participate in SCF complexes. To determine their functions, null mutants of 21 F-box-containing genes were created. Among them, the F-box proteins MoFwd1, MoCdc4 and MoFbx15 were found to be required for growth, development and full virulence. Fluorescent-microscopy observations demonstrated that both MoFbx15 and MoCdc4 were localized to the nucleus, compared with MoFwd1, which was distributed in the cytosol. MoCdc4 and MoFwd1 bound to MoSkp1 via the F-box domain, the deletion of which abrogated their function. Race tube and qRT-PCR assays confirmed that MoFwd1 was involved in circadian rhythm by regulating transcription and protein stability of the core circadian clock regulator MoFRQ. Moreover, MoFWD1 also orchestrates conidial germination by influencing conidial amino acids pools and oxidative stress release. Overall, our results indicate that SCF ubiquitin ligases play indispensable roles in development and pathogenicity in M. oryzae.


Asunto(s)
Proteínas F-Box/metabolismo , Proteínas Fúngicas/metabolismo , Magnaporthe/metabolismo , Magnaporthe/patogenicidad , Oryza/microbiología , Proteínas Cullin/metabolismo , Proteínas F-Box/genética , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica , Magnaporthe/genética , Esporas Fúngicas/metabolismo , Virulencia
4.
Semin Cell Dev Biol ; 57: 128-137, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27072489

RESUMEN

Autophagy is a conserved cellular process that degrades cytoplasmic constituents in vacuoles. Plant pathogenic fungi develop special infection structures and/or secrete a range of enzymes to invade their plant hosts. It has been demonstrated that monitoring autophagy processes can be extremely useful in visualizing the sequence of events leading to pathogenicity of plant pathogenic fungi. In this review, we introduce the molecular mechanisms involved in autophagy. In addition, we explore the relationship between autophagy and pathogenicity in plant pathogenic fungi. Finally, we discuss the various experimental strategies available for use in the study of autophagy in plant pathogenic fungi.


Asunto(s)
Autofagia , Hongos/citología , Hongos/patogenicidad , Plantas/microbiología , Biomarcadores/metabolismo , Hongos/ultraestructura , Enfermedades de las Plantas/microbiología , Plantas/ultraestructura , Vacuolas/metabolismo , Vacuolas/ultraestructura
5.
Environ Microbiol ; 20(4): 1516-1530, 2018 04.
Artículo en Inglés | MEDLINE | ID: mdl-29468804

RESUMEN

Pyricularia oryzae is the causal pathogen of rice blast disease. Autophagy has been shown to play important roles in P. oryzae development and plant infection. The P. oryzae endosomal system is highly dynamic and has been shown to be associated with conidiogenesis and pathogenicity as well. To date, the crosstalk between autophagy and endocytosis has not been explored in P. oryzae. Here, we identified three P. oryzae VPS9 domain-containing proteins, PoVps9, PoMuk1 and PoVrl1. We found that PoVps9 and PoMuk1 are localized to vesicles and are each co-localized with PoVps21, a recognized marker of early endosomes. Deletion of PoVPS9 resulted in severe defects in endocytosis and autophagosome degradation and impaired the localization of PoVps21 to endosomes. Additionally, deletion of the PoMUK1 gene in the ΔPovps9 mutant background exhibited more severe defects in development, autophagy and endocytosis compared with the ΔPovps9 mutant. Pull-down assay showed that PoVps9 interacts with PoVps21, PoRab11 and PoRab1, which have been verified to participate in endocytosis. Furthermore, yeast two-hybrid and co-immunoprecipitation assays confirmed that PoVps9 directly interacts with the GDP form of PoVps21. Thus, PoVps9 is a key protein involved in autophagy and in endocytosis.


Asunto(s)
Autofagia/genética , Endocitosis/genética , Proteínas Fúngicas/genética , Magnaporthe/genética , Magnaporthe/patogenicidad , Oryza/microbiología , Endocitosis/fisiología , Endosomas/genética , Endosomas/metabolismo , Enfermedades de las Plantas/microbiología , Dominios Proteicos/genética
6.
Bioprocess Biosyst Eng ; 40(9): 1427-1436, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-28642968

RESUMEN

In this study, sequential biological pretreatment (BP) with Galactomyces sp. CCZU11-1 at 30 °C for 3 days and deep eutectic solvent (DES) choline chloride: oxalic acid (ChCl:OA, 1 mol/2 mol) extraction at 120 °C for 1.5 h was used for pretreating BSS. It was found that combination pretreatment could effectively remove xylan and lignin for enhancing enzymatic saccharification. The reducing sugars and glucose from the hydrolysis of 100 g/L pretreated BSS with complexed cellulases of Galactomyces sp. CCZU11-1 were obtained in the yields of 81.0% and 74.1%, respectively. The BSS-hydrolyzates had no inhibitory effects on the lipid-accumulating microorganism Bacillus sp. CCZU11-1, and the cell mass and TAG accumulation were 4.8 g CDW/L and 2.2 g TAG/L, respectively. Fatty acids including palmitic acid (C16:0; 25.3%), palmitoleic acid (C16:1; 24.4%), stearic acid (C18:0; 15.1%), and oleic acid (C18:1; 21.6%) were accumulated in cells. Clearly, this combination pretreatment has high potential application in future.


Asunto(s)
Celulasa/química , Colina/química , Proteínas Fúngicas/química , Ácido Oxálico/química , Brotes de la Planta/química , Poaceae/química , Saccharomycetales/enzimología , Lignina/química , Xilanos/química
7.
Environ Microbiol ; 18(11): 4170-4187, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-27581713

RESUMEN

The ubiquitin system modulates protein functions through targeting substrates for ubiquitination. Here, E2 conjugating enzyme MoRad6-related ubiquitination pathways are identified and analyzed in Magnaporthe oryzae, the causal agent of rice blast disease. Disruption of MoRad6 leads to severe defects in growth, sporulation, conidial germination, appressorium formation, and plant infection. To depict the functions of MoRad6, three putative ubiquitin ligases, MoRad18, MoBre1 and MoUbr1, are also characterized. Deletion of MoRad18 causes minor phenotypic changes, while MoBre1 is required for growth, conidiation and pathogenicity in M. oryzae. Defects in ΔMobre1 likely resulted from the reduction in di- and tri-methylation level of Histone 3 lysine 4 (H3K4). Notably, MoUbr1 is crucial for conidial adhesion and germination, possibly by degrading components of cAMP/PKA and mitogen-activated protein kinase (MAPK) Pmk1 signaling pathways via the N-end rule pathway. Germination failure of ΔMoubr1 conidia could be rescued by elevation of cAMP level or enhanced Pmk1 phosphorylation resulting from further deletion of MoIra1, the M. oryzae homolog of yeast Ira1/2. These reveal vital effects of cAMP/PKA and MAPK Pmk1 signaling on conidial germination in M. oryzae. Altogether, our results suggest that MoRad6-mediated ubiquitination pathways are essential for the infection-related development and pathogenicity of M. oryzae.


Asunto(s)
Proteínas Fúngicas/metabolismo , Magnaporthe/enzimología , Magnaporthe/patogenicidad , Enfermedades de las Plantas/microbiología , Enzimas Ubiquitina-Conjugadoras/metabolismo , Proteínas Fúngicas/genética , Magnaporthe/genética , Magnaporthe/crecimiento & desarrollo , Proteínas Quinasas Activadas por Mitógenos/genética , Proteínas Quinasas Activadas por Mitógenos/metabolismo , Oryza/microbiología , Transducción de Señal , Esporas Fúngicas/enzimología , Esporas Fúngicas/genética , Esporas Fúngicas/crecimiento & desarrollo , Esporas Fúngicas/patogenicidad , Enzimas Ubiquitina-Conjugadoras/genética , Ubiquitinación , Virulencia
8.
Guang Pu Xue Yu Guang Pu Fen Xi ; 36(2): 331-5, 2016 Feb.
Artículo en Zh | MEDLINE | ID: mdl-27209725

RESUMEN

This paper introduces the methods improving the performance and stability of copper-phthalocyanine(CuPc) / fullerene (C60) small molecule solar cells by using tris-(8-hydroxyquinoline) aluminum(Alq3): cesium fluoride(CsF) composite cathode buffer layer. The device with Alq3:CsF composite cathode buffer layer with a 4 wt. % CsF at a thickness of 5 nm exhibits a power conversion efficiency (PCE) of up to 0.76%, which is an improvement of 49%, compared to a device with single Alq3 cathode buffer layer and half-lifetime of the cell in air at ambient circumstance without any encapsulation is almost 9.8 hours, 6 times higher than that of without buffer layer, so the stability is maintained. The main reason of the device performance improvement is that doping of CsF can adjust the interface energy alignment, optimize the electronic transmission characteristics of Alq3 and improve the short circuit current and the fill factor of the device using ultraviolet-visible absorption, external quantum efficiency and single-electron devices. Placed composite cathode buffer layer devices with different time in the air, by comparing and analyzing current voltage curve, Alq3:CsF can maintain a good stability as Alq3. Alq3:CsF layer can block the diffusion of oxygen and moisture so completely as to improve the lifetime of the device.

9.
Environ Microbiol ; 17(11): 4495-510, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25991510

RESUMEN

Rab GTPases are required for vesicle-vacuolar fusion during vacuolar biogenesis in fungi. To date, little is known about the biological functions of the Rab small GTPase components in Magnaporthe oryzae. In this study, we investigated MoYpt7 of M. oryzae, a homologue of the small Ras-like GTPase Ypt7 in Saccharomyces cerevisiae. Cellular localization assays showed that MoYpt7 was predominantly localized to vacuolar membranes. Using a targeted gene disruption strategy, a ΔMoYPT7 mutant was generated that exhibited defects in mycelial growth and production of conidia. The conidia of the ΔMoYPT7 mutant were malformed and defective in the formation of appressoria. Consequently, the ΔMoYPT7 mutant failed to cause disease in rice and barley. Furthermore, the ΔMoYPT7 mutant showed impairment in autophagy, breached cell wall integrity, and higher sensitivity to both calcium and heavy metal stress. Transformants constitutively expressing an active MoYPT7 allele (MoYPT7-CA, Gln67Leu) exhibited distinct phenotypes from the ΔMoYPT7 mutant. Expression of MoYPT7-CA in MoYpt7 reduced pathogenicity and produced more appressoria-forming single-septum conidia. These results indicate that MoYPT7 is required for fungal morphogenesis, vacuole fusion, autophagy, stress resistance and pathogenicity in M. oryzae.


Asunto(s)
Autofagia/genética , Proteínas Fúngicas/metabolismo , Magnaporthe/patogenicidad , Fusión de Membrana/genética , Vacuolas/metabolismo , Proteínas de Unión al GTP rab/metabolismo , Secuencia de Aminoácidos , Calcio/farmacología , Pared Celular/metabolismo , Proteínas Fúngicas/genética , Hordeum/microbiología , Magnaporthe/genética , Fusión de Membrana/fisiología , Metales Pesados/farmacología , Datos de Secuencia Molecular , Oryza/microbiología , Fenotipo , Enfermedades de las Plantas/microbiología , Saccharomyces cerevisiae/genética , Esporas Fúngicas/genética , Esporas Fúngicas/metabolismo , Estrés Fisiológico/genética , Virulencia/genética , Proteínas de Unión al GTP rab/genética
10.
Arch Virol ; 157(12): 2383-8, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22855125

RESUMEN

Hepatitis E virus (HEV) is an enteric pathogen of humans and animals, and pigs have been considered an important reservoir of this virus. Recent evidence has indicated the cross-species transmission of hepatitis E virus (HEV) from pigs to humans, causing zoonosis, mostly via consumption of uncooked or undercooked animal meat/viscera. In this study, we have developed a one-step RT-LAMP assay for rapid detection of swine HEV. Specific primer sets targeting the ORF3 gene were designed. The sensitivity of the RT-LAMP assay was 10(1) copies/µl of RNA template, which was tenfold higher than that of RT-nPCR. The specificity of this assay was demonstrated by the lack of amplification of DNA/RNA from other swine viruses. Furthermore, a total of 41 bile samples were subjected to RT-LAMP and RT-nPCR. Eighteen positive samples were detected by RT-nPCR, while 36 positive samples were detected by RT-LAMP, indicating that the sensitivity of the RT-LAMP assay was higher than that of the conventional RT-nPCR assay. The RT-LAMP assay reported here may be used for diagnosis of swine HEV, not only in laboratories but also under field conditions.


Asunto(s)
Virus de la Hepatitis E/aislamiento & purificación , Hepatitis E/veterinaria , Técnicas de Amplificación de Ácido Nucleico/veterinaria , Enfermedades de los Porcinos/virología , Animales , Bilis/virología , Regulación Viral de la Expresión Génica , Hepatitis E/diagnóstico , Hepatitis E/virología , Virus de la Hepatitis E/genética , Técnicas de Amplificación de Ácido Nucleico/métodos , Filogenia , ARN Viral/genética , ARN Viral/aislamiento & purificación , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/veterinaria , Sensibilidad y Especificidad , Porcinos , Enfermedades de los Porcinos/diagnóstico
11.
Environ Pollut ; 308: 119623, 2022 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-35714790

RESUMEN

The fraction of soil-borne particulates in indoor air (fspi), a principal exposure factor in health risk assessment of soil, is used to calculate the inhaled dose of contaminants in air particulates (PM10) from soil. To investigate the fspi, consecutive 24-h PM10 samples (n = 180) of indoor ambient were collected from September 2019 to January 2020 in Guangzhou main urban areas, China. The concentrations of twenty-six metal elements, five anions, organic carbon (OC) and elemental carbon (EC) in samples were measured. The sources of indoor ambient PM10 and the value of fspi were identified by the method of Positive Matrix Factor analysis (PMF). Results showed that the main sources contributing to indoor PM10 content were combustion sources (50.53%) and vehicular sources (28.17%). The soil sources (the local fspi) were 19.96%. The soil contents of indoor PM10 in Guangzhou main urban areas were in accordance with those in similar monsoon climate regions, such as Malaysia. The health risks of the inhalation route were dropped by about 62% for some common brownfield contaminants (Cr (VI), Ni, Be and Cd) with the investigated local fspi in Guangzhou main urban areas, compared with using the fspi (0.8) recommended by the C-RAG model in China. The results supplied a new effective methodology for estimation of the local fspi value in health risk assessment of soil contamination in urban areas.


Asunto(s)
Contaminantes Atmosféricos , Contaminación del Aire Interior , Contaminantes Atmosféricos/análisis , Contaminación del Aire Interior/análisis , Carbono/análisis , China , Carbón Mineral/análisis , Polvo/análisis , Monitoreo del Ambiente/métodos , Análisis Factorial , Material Particulado/análisis , Medición de Riesgo , Estaciones del Año , Suelo
12.
BMC Genomics ; 12: 439, 2011 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-21880155

RESUMEN

BACKGROUND: To elucidate the molecular complications in many complex diseases, we argue for the priority to construct a model representing the normal physiological state of a cell/tissue. RESULTS: By analyzing three independent microarray datasets on normal human tissues, we established a quantitative molecular model GET, which consists of 24 tissue-specific Gene Expression Templates constructed from a set of 56 genes, for predicting 24 distinct tissue types under disease-free condition. 99.2% correctness was reached when a large-scale validation was performed on 61 new datasets to test the tissue-prediction power of GET. Network analysis based on molecular interactions suggests a potential role of these 56 genes in tissue differentiation and carcinogenesis.Applying GET to transcriptomic datasets produced from tissue development studies the results correlated well with developmental stages. Cancerous tissues and cell lines yielded significantly lower correlation with GET than the normal tissues. GET distinguished melanoma from normal skin tissue or benign skin tumor with 96% sensitivity and 89% specificity. CONCLUSIONS: These results strongly suggest that a normal tissue or cell may uphold its normal functioning and morphology by maintaining specific chemical stoichiometry among genes. The state of stoichiometry can be depicted by a compact set of representative genes such as the 56 genes obtained here. A significant deviation from normal stoichiometry may result in malfunction or abnormal growth of the cells.


Asunto(s)
Perfilación de la Expresión Génica/métodos , Genoma Humano , Neoplasias/genética , Especificidad de Órganos , Línea Celular , Análisis por Conglomerados , Bases de Datos Genéticas , Redes Reguladoras de Genes , Humanos , Anotación de Secuencia Molecular , Análisis de Secuencia por Matrices de Oligonucleótidos , Sensibilidad y Especificidad , Piel/metabolismo
13.
J Nanosci Nanotechnol ; 11(12): 11019-22, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22409047

RESUMEN

The optimal carbon nanotube (CNT) bundles with a hexagonal arrangement were synthesized using thermal chemical vapor deposition (TCVD). To enhance the electron field emission characteristics of the pristine CNTs, the zinc oxide (ZnO) nanostructures coated on CNT bundles using another TCVD technique. Transmission electron microscopy (TEM) images showed that the ZnO nanostructures were grown onto the CNT surface uniformly, and the surface morphology of ZnO nanostructures varied with the distance between the CNT bundle and the zinc acetate. The results of field emissions showed that the ZnO nanostructures grown onto the CNTs could improve the electron field emission characteristics. The enhancement of field emission characteristics was attributed to the increase of emission sites formed by the nanostructures of ZnO grown onto the CNT surface, and each ZnO nanostructure could be regarded as an individual field emission site. In addition, ZnO-coated CNT bundles exhibited a good emission uniformity and stable current density. These results demonstrated that ZnO-coated CNTs is a promising field emitter material.

14.
Minim Invasive Surg ; 2021: 5524986, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33976937

RESUMEN

BACKGROUND: Totally extraperitoneal herniorrhaphy (TEP) is a therapeutic challenge because of its complex anatomical location in inguinal region. The aim of this study was to describe the related surgical anatomy through laparoscopic observation and share the lessons learned from a review of 250 primary inguinal hernia repair procedures performed at our hospital from January 2013 to November 2019. Patients and Methods. There were 245 men and 5 women (median age: 63.2 years). Right hernia (60.2%) was the most common site. Indirect hernia (60.5%) was the most common abnormality. The classification of type II (65.0%) was the most common form. Surgical techniques comprised retromuscular approach using cauterized dissection, management of variations of arcuate line, Retzius space and Bogros space dissection, hernia sac reduction, and mesh positioning. RESULTS: The incidence of peritoneum injury was in 27 (10.1%). No epigastric vessels were injured. There were 8 (3%) hematoma and 18 (6.8%) seroma. No mesh infection, chronic pain, and recurrence were found after follow-up of an average of 35 months. CONCLUSION: A good understanding of the anatomically complex nature in the inguinal region can make it easier and safer to learn the TEP approach. Early and midterm outcomes after TEP are satisfactory.

15.
Autophagy ; 17(10): 2939-2961, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-33176558

RESUMEN

Sterols are a class of lipids critical for fundamental biological processes and membrane dynamics. These molecules are synthesized in the endoplasmic reticulum (ER) and are transported bi-directionally between the ER and plasma membrane (PM). However, the trafficking mechanism of sterols and their relationship with macroautophagy/autophagy are still poorly understood in the rice blast fungus Magnaporthe oryzae. Here, we identified the VAD1 Analog of StAR-related lipid transfer (VASt) domain-containing protein MoVast1 via co-immunoprecipitation in M. oryzae. Loss of MoVAST1 resulted in conidial defects, impaired appressorium development, and reduced pathogenicity. The MoTor (target of rapamycin in M. oryzae) activity is inhibited because MoVast1 deletion leads to high levels of sterol accumulation in the PM. Site-directed mutagenesis showed that the 902 T site is essential for localization and function of MoVast1. Through filipin or Flipper-TR staining, autophagic flux detection, MoAtg8 lipidation, and drug sensitivity assays, we uncovered that MoVast1 acts as a novel autophagy inhibition factor that monitors tension in the PM by regulating the sterol content, which in turn modulates the activity of MoTor. Lipidomics and transcriptomics analyses further confirmed that MoVast1 is an important regulator of lipid metabolism and the autophagy pathway. Our results revealed and characterized a novel sterol transfer protein important for M. oryzae pathogenicity.Abbreviations: AmB: amphotericin B; ATMT: Agrobacterium tumefaciens-mediated transformation; CM: complete medium; dpi: days post-inoculation; ER: endoplasmic reticulum; Flipper-TR: fluorescent lipid tension reporter; GO: Gene ontology; hpi: hours post-inoculation; IH: invasive hyphae; KEGG: kyoto encyclopedia of genes and genomes; MoTor: target of rapamycin in Magnaporthe oryzae; PalmC: palmitoylcarnitine; PM: plasma membrane; SD-N: synthetic defined medium without amino acids and ammonium sulfate; TOR: target of rapamycin; VASt: VAD1 Analog of StAR-related lipid transfer; YFP, yellow fluorescent protein.


Asunto(s)
Magnaporthe , Oryza , Ascomicetos , Autofagia/genética , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Homeostasis , Magnaporthe/genética , Oryza/microbiología , Enfermedades de las Plantas/microbiología , Esteroles/metabolismo
16.
Virulence ; 10(1): 481-489, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-30475080

RESUMEN

The interaction between pathogens and their host plants is a ubiquitous process. Some plant fungal pathogens can form a specific infection structure, such as an appressorium, which is formed by the accumulation of a large amount of glycerin and thereby the creation of an extremely high intracellular turgor pressure, which allows the penetration peg of the appressorium to puncture the leaf cuticle of the host. Previous studies have shown that autophagy energizes the accumulation of pressure by appressoria, which induces its pathogenesis. Similar to other eukaryotic organisms, autophagy processes are highly conserved pathways that play important roles in filamentous fungal pathogenicity. This review aims to demonstrate how the autophagy process affects the pathogenicity of plant pathogens.


Asunto(s)
Autofagia , Hongos/patogenicidad , Enfermedades de las Plantas/microbiología , Endocitosis , Proteínas Fúngicas/genética , Hongos/genética , Genes Fúngicos , Oryza/microbiología , Transducción de Señal , Virulencia
17.
Virulence ; 10(1): 1047-1063, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31814506

RESUMEN

Fap7, an important ribosome assembly factor, plays a vital role in pre-40S small ribosomal subunit synthesis in Saccharomyces cerevisiae via its ATPase activity. Currently, the biological functions of its homologs in filamentous fungi remain elusive. Here, MoFap7, a homologous protein of ScFap7, was identified in the rice blast fungus Magnaporthe oryzae, which is a devastating fungal pathogen in rice and threatens food security worldwide. ΔMofap7 mutants exhibited defects in growth and development, conidial morphology, appressorium formation and infection, and were sensitive to oxidative stress. In addition, site-directed mutagenesis analysis confirmed that the conserved Walker A motif and Walker B motif in MoFap7 are essential for the biological functions of M. oryzae. We further analyzed the regulation mechanism of MoFap7 in pathogenicity. MoFap7 was found to interact with MoMst50, a regulator functioning in the MAPK Pmk1 signaling pathway, that participates in modulating plant penetration and cell-to-cell invasion by regulating the phosphorylation of MoPmk1. Moreover, MoFap7 interacted with the GTPases MoCdc42 and MoRac1 to control growth and conidiogenesis. Taken together, the results of this study provide novel insights into MoFap7-mediated orchestration of the development and pathogenesis of filamentous fungi.


Asunto(s)
Proteínas Fúngicas/genética , Magnaporthe/crecimiento & desarrollo , Magnaporthe/genética , Enfermedades de las Plantas/microbiología , Esporas Fúngicas/crecimiento & desarrollo , Eliminación de Gen , Regulación Fúngica de la Expresión Génica , Magnaporthe/patogenicidad , Mutagénesis Sitio-Dirigida , Oryza/microbiología , Estrés Oxidativo , Transducción de Señal , Esporas Fúngicas/genética , Virulencia/genética
18.
Virulence ; 10(1): 719-733, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31392921

RESUMEN

Casein kinases are serine/threonine protein kinases that are evolutionarily conserved in yeast and humans and are involved in a range of important cellular processes. However, the biological functions of casein kinases in the fungus Magnaporthe oryzae, the causal agent of destructive rice blast disease, are not characterized. Here, two casein kinases, MoYCK1 and MoHRR25, were identified and targeted for replacement, but only MoYCK1 was further characterized due to the possible nonviability of the MoHRR25 deletion mutant. Disruption of MoYCK1 caused pleiotropic defects in growth, conidiation, conidial germination, and appressorium formation and penetration, therefore resulting in reduced virulence in rice seedlings and barley leaves. Notably, the MoYCK1 deletion triggered quick lipidation of MoAtg8 and degradation of the autophagic marker protein GFP-MoAtg8 under nitrogen starvation conditions, in contrast to the wild type, indicating that autophagy activity was negatively regulated by MoYck1. Furthermore, we found that HOPS (homotypic fusion and vacuolar protein sorting) subunit MoVps41, a putative substrate of MoYck1, was co-located with MoAtg8 and positively required for the degradation of MoAtg8-PE and GFP-MoAtg8. In addition, MoYCK1 is also involved in the response to ionic hyperosmotic and heavy metal cation stresses. Taken together, our results revealed crucial roles of the casein kinase MoYck1 in regulating development, autophagy and virulence in M. oryzae.


Asunto(s)
Autofagia/genética , Caseína Quinasas/genética , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica/genética , Magnaporthe/genética , Magnaporthe/patogenicidad , Técnicas de Inactivación de Genes , Hordeum/microbiología , Magnaporthe/enzimología , Mutación , Oryza/microbiología , Enfermedades de las Plantas/microbiología , Esporas Fúngicas , Virulencia , Factores de Virulencia/genética
19.
BMC Genomics ; 8: 416, 2007 Nov 13.
Artículo en Inglés | MEDLINE | ID: mdl-17997864

RESUMEN

BACKGROUND: The enormous amount of sequence data available in the public domain database has been a gold mine for researchers exploring various themes in life sciences, and hence the quality of such data is of serious concern to researchers. Removal of vector contamination is one of the most significant operations to obtain accurate sequence data containing only a cDNA insert from the basecalls output by an automatic DNA sequencer. Popular bioinformatics programs to accomplish vector trimming include LUCY, cross_match and SeqClean. RESULTS: In a recent study, where the program SeqClean was used to remove vector contamination from our test set of EST data compiled through various library construction systems, however, a significant number of errors remained after preliminary trimming. These errors were later almost completely corrected by simply using a re-linearized form of the cloning vector to compare against the target ESTs. The modified trimming procedure for SeqClean was also compared with the trimming efficiency of the other two popular programs, LUCY2, and cross_match. Using SeqClean with a re-linearized form of the cloning vector significantly surpassed the other two programs in all tested conditions, while the performance of the other two programs was not influenced by the modified procedure. Vector contamination in dbEST was also investigated in this study: 2203 out of the 48212 ESTs sampled from dbEST (2007-04-18 freeze) were found to match sequences in UNIVEC. CONCLUSION: Vector contamination remains a serious concern to the data quality in the public sequence database nowadays. Based on the results presented here, we feel that our modified procedure with SeqClean should be recommended to all researchers for the task of vector removal from EST or genomic sequences.


Asunto(s)
Etiquetas de Secuencia Expresada , Vectores Genéticos , Secuencia de Bases , Datos de Secuencia Molecular
20.
Appl Biochem Biotechnol ; 181(4): 1347-1359, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-27812898

RESUMEN

To increase the biocatalytic activity of Escherichia coli CCZU-T15 whole cells, choline chloride/glycerol ([ChCl][Gly]) was firstly used as biocompatible solvent for the effective biotransformation of ethyl 4-chloro-3-oxobutanoate (COBE) into ethyl (S)-4-chloro-3-hydroxybutanoate [(S)-CHBE]. Furthermore, L-glutamine (150 mM) was added into [ChCl][Gly]-water ([ChCl][Gly] 12.5 vol%, pH 6.5) media instead of NAD+ for increasing the biocatalytic efficiency. To further improve the biosynthesis of (S)-CHBE (>99 % e.e.) by E. coli CCZU-T15 whole cells, Tween-80 (7.5 mM) was also added into this reaction media, and (S)-CHBE (>9 % e.e.) could be effectively synthesized from 2000 and 3000 mM COBE in the yields of 100 and 93.0 % by whole cells of recombinant E. coli CCZU-T15, respectively. TEM image indicated that the cell membrane was permeabilized and lost its integrity and when the cell was exposed to [ChCl][Gly]-water media with Tween-80. Clearly, this bioprocess has high potential for the effective biosynthesis of (S)-CHBE (>99 % e.e.).


Asunto(s)
Acetoacetatos/metabolismo , Butiratos/metabolismo , Medios de Cultivo/química , Medios de Cultivo/farmacología , ADN Recombinante/genética , Escherichia coli/citología , Escherichia coli/metabolismo , Biotransformación/efectos de los fármacos , Colina/química , Relación Dosis-Respuesta a Droga , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Glicol de Etileno/química , Glutamina/química , Polisorbatos/química , Agua/química
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