Genetic manipulation of structural color in bacterial colonies.

Naturally occurring photonic structures are responsible for the bright and vivid coloration in a large variety of living organisms. Despite efforts to understand their biological functions, development, and complex optical response, little is known of the underlying genes involved in the development of these nanostructures in any domain of life. Here, we used Flavobacterium colonies as a model system to demonstrate that genes responsible for gliding motility, cell shape, the stringent response, and tRNA modification contribute to the optical appearance of the colony. By structural and optical analysis, we obtained a detailed correlation of how genetic modifications alter structural color in bacterial colonies. Understanding of genotype and phenotype relations in this system opens the way to genetic engineering of on-demand living optical materials, for use as paints and living sensors.

Preparing the generalized Harvey-Shack rough surface scattering method for use with the discrete ordinates method.

The paper shows how to implement the generalized Harvey-Shack (GHS) method for isotropic rough surfaces discretized in a polar coordinate system and approximated using Fourier series. This is particularly relevant for the use of the GHS method as a boundary condition for radiative transfer problems in slab geometries, where the discrete ordinates method can be applied to solve the problem. Furthermore, such an implementation is a more convenient discretization of the problem than the traditional direction cosine space that has its strengths in analytical problems and intuitive understanding (mainly due to its translation invariance). A computer implementation of scattering from a Gaussian rough surface with Gaussian autocovariance written in Python is included at the end of the paper.

Optical role of randomness for structured surfaces.

It has long been known that random height variations of a repeated nanoscale structure can give rise to smooth angular color variations instead of the well-known diffraction pattern experienced if no randomization is present. However, until now there have been few publications trying to explain this and similar phenomena taking outset in electromagnetic theory. This paper presents a method for analyzing far-field reflection from a surface constructed by translated instances of a given structure. Several examples of the effect of random translations are given.

Nanopillar Diffraction Gratings by Two-Photon Lithography.

Two-dimensional photonic structures such as nanostructured pillar gratings are useful for various applications including wave coupling, diffractive optics, and security features. Two-photon lithography facilitates the generation of such nanostructured surfaces with high precision and reproducibility. In this work, we report on nanopillar diffraction gratings fabricated by two-photon lithography with various laser powers close to the polymerization threshold of the photoresist. As a result, defect-free arrays of pillars with diameters down to 184 nm were fabricated. The structure sizes were analyzed by scanning electron microscopy and compared to theoretical predictions obtained from Monte Carlo simulations. The optical reflectivities of the nanopillar gratings were analyzed by optical microscopy and verified by rigorous coupled-wave simulations.

Structural colours in the frond of Microsorum thailandicum.

Blue and near-ultraviolet structural colours have often been reported in understorey plants living in deep shade. While this intense blue coloration is very catchy to the eye of a human observer, there are cases in which structural colours can be hidden either by the scattered light interacting with pigments or because they are found in unexpected positions in the plants. Here, we show that the fronds of Microsorum thailandicum produce structural coloration on both the adaxial and abaxial epidermal surface. While cellulose helicoidal structures are responsible for this coloration in both epidermal layers, the reflected colours are consistently different: an intense blue reflection is found in the adaxial epidermis while red-shifted and less intense colours are observed in the abaxial epidermis, possibly suggesting photo-adaptation of the plant to the light environment. By comparing the optical properties of the fern with its anatomy we computed the theoretical reflection accounting for the presence of disorder in the cellulose helicoidal architecture.

Reproducing the hierarchy of disorder for Morpho-inspired, broad-angle color reflection.

The scales of Morpho butterflies are covered with intricate, hierarchical ridge structures that produce a bright, blue reflection that remains stable across wide viewing angles. This effect has been researched extensively, and much understanding has been achieved using modeling that has focused on the positional disorder among the identical, multilayered ridges as the critical factor for producing angular independent color. Realizing such positional disorder of identical nanostructures is difficult, which in turn has limited experimental verification of different physical mechanisms that have been proposed. In this paper, we suggest an alternative model of inter-structural disorder that can achieve the same broad-angle color reflection, and is applicable to wafer-scale fabrication using conventional thin film technologies. Fabrication of a thin film that produces pure, stable blue across a viewing angle of more than 120 ° is demonstrated, together with a robust, conformal color coating.