A Simplified Method for Predicting Bond-Slip Behaviour of Ribbed Bars and Threaded Rods Glued in Glulam along the Grain.

The bond between a steel reinforcement/rod and glulam plays a crucial role in the resistance and deformation capacity of timbers joints. Existing studies provide different bond-slip models for reinforcements and rods with different anchorage lengths, in which the relationship between local bond stress and global bond behaviour cannot not be established. This study presents a unified analytical method for predicting the bond-slip behaviour of ribbed bars and threaded rods along the grain using a local bond-slip model of reinforcement at the elastic and post-yield stages. In the analytical method, equilibrium, compatibility, and constitutive models for reinforcement and rods are considered. The method is verified using test data of rebars and rods with different anchorage lengths. Comparisons between the experimental and calculated results suggest that the analytical method yields reasonably good predictions of the load-slip relationship and failure mode. Furthermore, the embedment lengths required for yield and the ultimate strengths of the reinforcement and rods along the grain are determined by assuming uniform bond stress distributions over the elastic and post-yield steel segment. The average bond stress over the entire anchorage length is calculated and compared with existing equations. Design recommendations for anchorage lengths are proposed for ribbed bars and threaded rods glued in glulam.

Identifying the driver miRNAs with somatic copy number alterations driving dysregulated ceRNA networks in cancers.

BACKGROUND: MicroRNAs (miRNAs) play critical roles in cancer initiation and progression, which were critical components to maintain the dynamic balance of competing endogenous RNA (ceRNA) networks. Somatic copy number alterations (SCNAs) in the cancer genome could disturb the transcriptome level of miRNA to deregulate this balance. However, the driving effects of SCNAs of miRNAs were insufficiently understood. METHODS: In this study, we proposed a method to dissect the functional roles of miRNAs under different copy number states and identify driver miRNAs by integrating miRNA SCNAs profile, miRNA-target relationships and expression profiles of miRNA, mRNA and lncRNA. RESULTS: Applying our method to 813 TCGA breast cancer (BRCA) samples, we identified 29 driver miRNAs whose SCNAs significantly and concordantly regulated their own expression levels and further inversely dysregulated expression levels of their targets or disturbed the miRNA-target networks they directly involved. Based on miRNA-target networks, we further constructed dynamic ceRNA networks driven by driver SCNAs of miRNAs and identified three different patterns of SCNA interference in the miRNA-mediated dynamic ceRNA networks. Survival analysis of driver miRNAs showed that high-level amplifications of four driver miRNAs (including has-miR-30d-3p, has-mir-30b-5p, has-miR-30d-5p and has-miR-151a-3p) in 8q24 characterized a new BRCA subtype with poor prognosis and contributed to the dysfunction of cancer-associated hallmarks in a complementary way. The SCNAs of driver miRNAs across different cancer types contributed to the cancer development by dysregulating different components of the same cancer hallmarks, suggesting the cancer specificity of driver miRNA. CONCLUSIONS: These results demonstrate the efficacy of our method in identifying driver miRNAs and elucidating their functional roles driven by endogenous SCNAs, which is useful for interpreting cancer genomes and pathogenic mechanisms.

Identifying the personalized driver gene sets maximally contributing to abnormality of transcriptome phenotype in glioblastoma multiforme individuals.

High heterogeneity in genome and phenotype of cancer populations made it difficult to apply population-based common driver genes to the diagnosis and treatment of cancer individuals. Characterizing and identifying the personalized driver mechanism for glioblastoma multiforme (GBM) individuals were pivotal for the realization of precision medicine. We proposed an integrative method to identify the personalized driver gene sets by integrating the profiles of gene expression and genetic alterations in cancer individuals. This method coupled genetic algorithm and random walk to identify the optimal gene sets that could explain abnormality of transcriptome phenotype to the maximum extent. The personalized driver gene sets were identified for 99 GBM individuals using our method. We found that genomic alterations in between one and seven driver genes could maximally and cumulatively explain the dysfunction of cancer hallmarks across GBM individuals. The driver gene sets were distinct even in GBM individuals with significantly similar transcriptomic phenotypes. Our method identified MCM4 with rare genetic alterations as previously unknown oncogenic genes, the high expression of which were significantly associated with poor GBM prognosis. The functional experiments confirmed that knockdown of MCM4 could significantly inhibit proliferation, invasion, migration, and clone formation of the GBM cell lines U251 and U118MG, and overexpression of MCM4 significantly promoted the proliferation, invasion, migration, and clone formation of the GBM cell line U87MG. Our method could dissect the personalized driver genetic alteration sets that are pivotal for developing targeted therapy strategies and precision medicine. Our method could be extended to identify key drivers from other levels and could be applied to more cancer types.

Model-Based Adaptive Machine Learning Approach in Concrete Mix Design.

Concrete mix design is one of the most critical issues in concrete technology. This process aims to create a concrete mix which helps deliver concrete with desired features and quality. Contemporary requirements for concrete concern not only its structural properties, but also increasingly its production process and environmental friendliness, forcing concrete producers to use both chemically and technologically complex concrete mixtures. The concrete mix design methods currently used in engineering practice are joint analytical and laboratory procedures derived from the Three Equation Method and do not perform well enough for the needs of modern concrete technology. This often causes difficulties in predicting the final properties of the designed mix and leads to precautionary oversizing of concrete properties for fear of not providing the required parameters. A new approach that would make it possible to predict the newly designed concrete mix properties is highly desirable. The answer to this challenge can be methods based on machine learning, which have been intensively developed in recent years, especially in predicting concrete compressive strength. Machine learning-based methods have been more or less successful in predicting concrete compressive strength, but they do not reflect well the variability that characterises the currently used concrete mixes. A new adaptive solution that allows estimating concrete compressive strength on the basis of the concrete mix main ingredient composition by including two observations for a given batch of concrete is proposed herein. In presented study, a machine learning model was built with a deep neural network architecture, trained on an extensive database of concrete recipes, and translated into a mathematical formula. Testing on four concrete mix recipes was performed, which were calculated according to contemporary design methods (Bolomey and Fuller method), and a comparative analysis was conducted. It was found out that the new algorithm performs significantly better than that without adaptive features trained on the same dataset. The presented algorithm can be used as a concrete strength checking tool for the concrete mix design process.

Robust Adaptive Recurrent Cerebellar Model Neural Network for Non-linear System Based on GPSO.

A robust adaptive recurrent cerebellar model articulation controller (RARC) neural network for non-linear systems using the genetic particle swarm optimization (GPSO) algorithm is presented in this study. The RARC is used as the principal tracking controller and the robust compensation controller is designed to recover the residual of the approximation error. In the RARC neural network, the steepest descent gradient method and the Lyapunov function are used for deriving the adaptive law parameter of the system. Besides, the learning rates play an important role in these adaptive laws and they have a great effect on the functions of control systems. In this paper, the combination of the genetic algorithm with the mutation particle swarm optimization algorithm is applied to seek for the optimal learning rates of the RARC adaptation laws. The numerical simulations about the inverted pendulum system as well as the robot manipulator system are given to confirm the effectiveness and practicability of the GPSO-RARC-based control system. Compared with other control schemes, the proposed control scheme is testified to be reliable and can obtain the optimal parameter about the learning rates and the minimum root mean square error for non-linear systems.