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1.
Bioorg Med Chem Lett ; 97: 129543, 2024 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-37939863

RESUMEN

Heparanase-1 (HPSE1) is an endo-ß-d-glucuronidase that catalyzes degradation of heparan sulfate proteoglycans. Inhibition of HPSE1 appears to be a useful therapeutic target against cancer and proteinuric kidney diseases. We previously reported tetrahydroimidazo[1,2-a]pyridine 2 as a potent HPSE1 inhibitor after optimization of the synthetic reaction. However, synthesis of 2 involves a total of 19 steps, including a cyclization process that accompanies a strong odor due to the use of Lawesson's reagent and an epimerization reaction; furthermore, 2 exhibited insufficient selectivity for HPSE1 over exo-ß-d-glucuronidase (GUSß) and glucocerebrosidase (GBA), which also needed to be addressed. First, the cyclization reaction was optimized to synthesize tetrahydroimidazo[1,2-a]pyridine without using Lawesson's reagent or epimerization, with reference to previous reports. Next, 16 and 17 containing a bulkier substituent at position 6 than the 6-methoxyl group in 2 were designed and synthesized using the improved cyclization conditions, so that the synthetic route of 16 and 17 was shortened by five steps as compared with that of 2. The inhibitory activities of 16 and 17 against GUSß and GBA were reduced as compared with those of 2, that is, the compounds showed improved selectivity for HPSE1 over GUSß and GBA. In addition, 16 showed enhanced inhibitory activity against HPSE1 as compared with that of 2. Compound 16 appears promising as an HPSE1 inhibitor with therapeutic potential due to its highly potent inhibitory activity against HPSE1 with high selectivity for HPSE1.


Asunto(s)
Glucuronidasa , Piridinas , Glucuronidasa/antagonistas & inhibidores , Compuestos Organotiofosforados , Piridinas/química , Piridinas/farmacología
2.
Bioorg Med Chem Lett ; 79: 129050, 2023 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-36368497

RESUMEN

Heparanase-1 (HPSE1) is an endo-ß-d-glucuronidase that cleaves heparan sulfate proteoglycans into short-chain heparan sulfates (HS). The inhibition of HPSE1 has therapeutic potential for proteinuric diseases such as nephrotic syndrome because increased HPSE1 expression is associated with the loss of HS in the glomerular basement membrane, leading to the development of proteinuria. The present study examined the generation of a lead compound focusing on chemical structures with a sugar moiety, such as glycosides and sugar analogs, taking their physical properties into consideration. Compound 10, an exo-ß-d-glucuronidase (GUSß) inhibitor, was found to have a weak inhibitory activity against endo-ß-d-glucuronidase HPSE1. A structure-activity relationship study using the X-ray co-crystal structure of 10 and HPSE1 resulted in 12a, which showed a more than 14-fold increase in HPSE1 inhibitory activity compared with that of 10. Compound 12a could be a novel lead compound for the development of a potent HPSE1 inhibitor.


Asunto(s)
Ácidos Carboxílicos , Glucuronidasa , Glucuronidasa/metabolismo , Heparitina Sulfato/metabolismo , Piridinas , Azúcares
3.
Bioorg Med Chem ; 93: 117460, 2023 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-37660465

RESUMEN

Heparanase-1 (HPSE1) is an endo-ß-d-glucuronidase that is the only mammalian enzyme known to cleave heparan sulfate (HS) of heparan sulfate proteoglycans (HSPG), a key component of the glycocalyx layer of the vascular endothelium matrix. Inhibition of HPSE1 has therapeutic potential for cancer and proteinuric kidney diseases. We previously reported that 2 showed a moderate potency as an HPSE1 inhibitor and an issue of selectivity against exo-ß-d-glucuronidase (GUSß) and glucocerebrosidase (GBA) remained. A structure-based lead optimization of 2 using X-ray co-crystal structure analysis and fragment molecular orbital calculation resulted in 4e, which showed a more than 7-fold increase in HPSE1 inhibitory activity. The subsequent introduction of a methyl group into the 6-hydroxy group of 4e resulted in 18 with reduced inhibitory activities against GUSß and GBA while maintaining the inhibitory activity against HPSE1. The inhibitory activities of 18 against serum HPSE1 in mice were significant and lasted for 4 h at doses of 3, 30, and 100 mg/kg. Compound 18 could be a novel lead compound for HPSE1 inhibitors with improved inhibitory activity against HPSE1 and increased HPSE1 selectivity over GUSß and GBA.


Asunto(s)
Glucuronidasa , Piridinas , Animales , Ratones , Ácidos Carboxílicos , Mamíferos
4.
Drug Metab Dispos ; 49(1): 20-30, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33087449

RESUMEN

Hypoxia-inducible factor (HIF) is associated with the expression of CYP, but the underlying mechanism remains uncertain. In this study, we investigated the effect of HIF-α stabilization caused by novel prolyl hydroxylase domain (PHD) 2 inhibitors, which are HIF-α stabilizers that mimic hypoxia, on the expressions of CYP1A2, CYP2B6, and CYP3A4 in human hepatocytes. An mRNA expression analysis of human hepatocytes treated with PHD2 inhibitors for 72 hours showed the downregulation of genes encoding CYP1A2, CYP2B6, and CYP3A4. The mRNA repressions were accompanied with an increase in erythropoietin protein, a marker of HIF-α stabilization, indicating that HIF-α stabilization was involved in the downregulation of the CYP isoforms. To understand the underlying mechanisms, we assessed the relationship between the expressions of the CYP isoforms and those of their regulating transcription factors [aryl hydrocarbon receptor (AhR), AhR nuclear translocator (ARNT), constitutive androstane receptor (CAR), pregnane X receptor (PXR), and retinoid X receptor (RXR)] in human hepatocytes treated with the HIF-α stabilizers. As a result, the mRNA level of AhR did not decrease, although ARNT expression was repressed. On the other hand, the mRNA expression levels of CAR, PXR, and RXR were repressed and closely associated with those of CYP2B6 and CYP3A4. Although the underlying mechanism of the downregulation for CYP1A2 remains unclear, the presently reported results suggest that the downregulation of CYP2B6 and CYP3A4 via HIF-α stabilization is caused by a decrease in the expressions of CAR, PXR, and RXR. SIGNIFICANCE STATEMENT: We showed that hypoxia-inducible factor (HIF)-α stabilization downregulates CYP1A2, CYP2B6, and CYP3A4 using prolyl hydroxylase domain 2 inhibitors, which are HIF-α stabilizers, as a new tool to mimic hypoxia in human hepatocytes. To understand the underlying mechanisms, we assessed the relationship between the expressions of the CYP isoforms and those of their regulating transcription factors. Our findings would contribute to a better understanding of the hypoxia-triggered regulatory mechanism of drug-metabolizing enzymes in human hepatocytes.


Asunto(s)
Citocromo P-450 CYP1A2/metabolismo , Citocromo P-450 CYP2B6/metabolismo , Citocromo P-450 CYP3A/metabolismo , Hepatocitos , Subunidad alfa del Factor 1 Inducible por Hipoxia/metabolismo , Receptor de Androstano Constitutivo/metabolismo , Regulación hacia Abajo , Hepatocitos/efectos de los fármacos , Hepatocitos/metabolismo , Humanos , Prolina Dioxigenasas del Factor Inducible por Hipoxia/antagonistas & inhibidores , Receptor X de Pregnano/metabolismo , Inhibidores de Prolil-Hidroxilasa/farmacocinética , Estabilidad Proteica , Receptores X Retinoide/metabolismo
5.
Biol Pharm Bull ; 44(11): 1653-1661, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34719642

RESUMEN

TP0463518 (TS-143) is a competitive prolyl hydroxylase 1/2/3 pan-inhibitor, and has been shown to specifically stabilize hypoxia-inducible factor-2 alpha in the liver to increase erythropoietin production. While TP0463518 has been shown to improve renal anemia, its effect on anemia of inflammation is still unknown. In this study, we created a rat model of anemia of inflammation by administering peptidoglycan-polysaccharide (PG-PS) to Lewis rats; the PG-PS-treated rats developed anemia within 2 weeks after the PG-PS challenge. The hematopoietic effects of oral TP0463518 administration at 10 mg/kg once daily for 6 weeks were examined in this rat model. The hematocrit values in the TP0463518-treated group increased significantly from 32.8 ± 0.8 to 44.5 ± 2.1% after the treatment, which was comparable to that in the healthy control group. The change of the mean corpuscular volume following TP0463518 treatment was similar to that in the healthy control group up to week 4, and significantly higher than that in the vehicle-treated group. TP0463518 increased divalent metal transporter 1 and duodenal cytochrome b expressions in the intestine. Conversely, TP0465318 did not exert any effects on the expressions of genes involved in iron metabolism in the liver, even though TP0463518 dramatically increased erythropoietin expression. Furthermore, TP0463518 had no effect on the expressions of inflammation markers in the liver. These results suggest that TP0463518 increased iron absorption and improved anemia of inflammation without exacerbating liver inflammation. TP0463518 appears to have an acceptable safety profile and could become a useful new therapeutic option for anemia of inflammation.


Asunto(s)
Anemia/tratamiento farmacológico , Dihidropiridinas/farmacología , Inflamación/tratamiento farmacológico , Inhibidores de Prolil-Hidroxilasa/farmacología , Piridinas/farmacología , Anemia/etiología , Animales , Western Blotting , Dihidropiridinas/uso terapéutico , Ensayo de Inmunoadsorción Enzimática , Femenino , Inflamación/inducido químicamente , Inflamación/complicaciones , Hierro/sangre , Peptidoglicano/farmacología , Polisacáridos/farmacología , Inhibidores de Prolil-Hidroxilasa/uso terapéutico , Piridinas/uso terapéutico , Ratas , Ratas Endogámicas Lew , Transferrina/análisis
6.
Angew Chem Int Ed Engl ; 60(5): 2680-2683, 2021 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-33085132

RESUMEN

Since the beginning of polymer science, understanding the influence of mechanical stress on polymer chains has been a fundamental and important research topic. The detection of mechanoradicals generated by homolytic cleavage of the polymer chains in solution has been studied in many cases. However, the detection of mechanoradicals in the bulk is still limited owing to their high reactivity. Herein, we propose an innovative strategy to detect mechanoradicals visually and quantitatively using a chain-transfer agent that generates relatively stable fluorescent radicals as a molecular probe. Mechanoradicals generated by ball milling of polystyrene samples were successfully detected by using a diarylacetonitrile compound as a fluorescent molecular probe through this radical chain-transfer mechanism. This probe enables the visualization and quantitative evaluation of mechanoradicals generated by polymer-chain scission.

7.
J Pharmacol Exp Ther ; 372(2): 166-174, 2020 02.
Artículo en Inglés | MEDLINE | ID: mdl-31801803

RESUMEN

Prolyl hydroxylase (PHD) inhibitors are being developed as alternatives to recombinant human erythropoietin (rHuEPO) for the treatment of anemia in patients with chronic kidney disease (CKD). However, the effects of PHD inhibitors and rHuEPO on blood pressure and CKD in animal models susceptible to hypertension and nephropathy have not been studied. The present study compared the effects of dimethyloxaloylglycine (DMOG), a PHD inhibitor, and rHuEPO on the development of hypertension and renal injury in Dahl salt-sensitive rats fed an 8% salt diet for 3 weeks. DMOG and rHuEPO were equally effective at raising hemoglobin levels. Systolic blood pressure rose to a greater extent in rHuEPO-treated rats (267 ± 10 vs. 226 ± 4 mm Hg) than in rats given DMOG (189 ± 8 mm Hg). Urinary protein excretion increased to 568 ± 54 versus 353 ± 25 mg/day in rats treated with rHuEPO and vehicle; however, it only rose to 207 ± 21 mg/day in rats receiving DMOG. DMOG significantly attenuated the degree of glomerulosclerosis and renal interstitial fibrosis as compared with that in vehicle and rHuEPO-treated rats. This was associated with lower renal levels of monocyte chemoattractant protein-1 and interleukin-1ß and increased vascular endothelial growth factor expression in cortex and medulla. These results indicate that DMOG and rHuEPO are equally effective in increasing hemoglobin levels in Dahl S rats; however, rHuEPO aggravates hypertension and renal injury, whereas DMOG has marked renoprotective effects. These results suggest that PHD inhibitors may have a therapeutic advantage for the treatment of anemia in CKD. SIGNIFICANCE STATEMENT: Prolyl hydroxylase (PHD) inhibitors are in phase 3 clinical trials as alternatives to recombinant human erythropoietin (rHuEPO) for the treatment of anemia in chronic kidney disease (CKD). The present study reveals that dimethyloxaloylglycine (DMOG), a PHD inhibitor, and rHuEPO are equally effective in increasing hemoglobin levels in Dahl S rats; however, rHuEPO aggravated hypertension and renal injury, whereas DMOG attenuated the development of hypertension and prevented renal injury. PHD inhibitors may provide a safer therapeutic option for the treatment of anemia in CKD.


Asunto(s)
Aminoácidos Dicarboxílicos/farmacología , Anemia/tratamiento farmacológico , Eritropoyetina/metabolismo , Inhibidores de Prolil-Hidroxilasa/farmacología , Insuficiencia Renal Crónica/tratamiento farmacológico , Animales , Presión Sanguínea/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Fibrosis/metabolismo , Hemoglobinas/efectos de los fármacos , Hipertensión/metabolismo , Riñón/efectos de los fármacos , Masculino , Estrés Oxidativo/efectos de los fármacos , Prolil Hidroxilasas/metabolismo , Ratas , Ratas Endogámicas Dahl , Proteínas Recombinantes/metabolismo , Cloruro de Sodio Dietético/metabolismo , Factor A de Crecimiento Endotelial Vascular/metabolismo
8.
J Pharmacol Exp Ther ; 371(3): 675-683, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31585986

RESUMEN

Prolyl hydroxylase (PHD) 1/2/3 pan inhibitors are known to potentially induce erythropoietin (EPO) production in both the kidney and liver. The 2-[[1-[[6-(4-chlorophenoxy)pyridin-3-yl]methyl]-4-hydroxy-6-oxo-2,3-dihydropyridine-5-carbonyl]amino]acetic acid (TP0463518) is a novel PHD 1/2/3 pan inhibitor; however, the main source of EPO production after TP0463518 administration remained to be investigated. We examined the effect of TP0463518 in inducing EPO production in the kidney and liver by measuring the hypoxia-inducible factor 2α (HIF-2α), EPO mRNA, and serum EPO levels in normal and bilaterally nephrectomized rats. Furthermore, we examined whether liver-derived EPO improved anemia in 5/6 nephrectomized (5/6 Nx) rats. TP0463518 scarcely increased the HIF-2α and EPO mRNA expression levels in the kidney cortex, whereas oral administration of TP0463518 at 40 mg/kg dramatically increased the HIF-2α level from 0.27 to 1.53 fmol/mg and the EPO mRNA expression level by 1300-fold in the livers of healthy rats. After administration of TP0463518 at 20 mg/kg, the total EPO mRNA expression level in the whole liver was 22-fold that in the whole kidney. In bilaterally nephrectomized rats, TP0463518 raised the serum EPO concentration from 0 to 180 pg/ml at 20 mg/kg. Furthermore, repeated administration of TP0463518 at 10 mg/kg increased the reticulocyte count in 5/6 Nx rats on day 7 and raised the hemoglobin level on day 14. The present study revealed that TP0463518 specifically induced EPO production in the liver and improved anemia. The characteristic feature of TP0463518 would lead to not only a more detailed understanding of the PHD-HIF2α-EPO pathway in erythropoiesis, but a new therapeutic alternative for renal anemia. SIGNIFICANCE STATEMENT: Prolyl hydroxylase (PHD) 1/2/3 pan inhibitors are known to potentially induce erythropoietin (EPO) production in both the kidney and liver; however, their effects on renal EPO production have been shown to vary depending on the experimental conditions. The authors found that 2-[[1-[[6-(4-chlorophenoxy)pyridin-3-yl]methyl]-4-hydroxy-6-oxo-2,3-dihydropyridine-5-carbonyl]amino]acetic acid (TP0463518), a PHD 1/2/3 pan inhibitor, specifically induced EPO production in the liver and that the liver-derived EPO was pharmacologically effective. Investigation of the effects of TP0463518 may pave the way for the development of a new therapeutic alternative for renal anemia patients.


Asunto(s)
Dihidropiridinas/farmacología , Eritropoyetina/metabolismo , Hígado/efectos de los fármacos , Inhibidores de Prolil-Hidroxilasa/farmacología , Piridinas/farmacología , Animales , Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico/genética , Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico/metabolismo , Eritropoyetina/genética , Células Hep G2 , Humanos , Riñón/efectos de los fármacos , Riñón/metabolismo , Hígado/metabolismo , Ratas , Ratas Sprague-Dawley
9.
Am J Nephrol ; 48(3): 157-164, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30176654

RESUMEN

BACKGROUND: TP0463518 is a novel hypoxia-inducible factor prolyl hydroxylase inhibitor developed to aid in the treatment of anemia associated with chronic kidney disease (CKD) and is expected to increase erythropoietin (EPO) derived from liver. Two phase I studies were conducted in healthy volunteers (HV) and CKD patients undergoing hemodialysis (i.e., HD patients) or those not undergoing dialysis (i.e., ND patients). METHODS: Pharmacokinetics, pharmacodynamics, and safety profiles of TP0463518 were assessed. Forty HV received single oral doses of TP0463518 at 3, 6, 11, 20, and 36 mg or placebo. Twenty ND patients received single doses of TP0463518 at 1, 6, and 11 mg and 9 HD patients received TP0463518 at 1 and 11 mg doses. To identify the source organ of EPO, glycosylation patterns were determined using percentage migrated isoform (PMI) values. RESULTS: Declining renal function slowed elimination of TP0463518 and increased the mean AUC0-∞. ∆Emax of serum EPO in 11-mg groups of HV, ND patients, and HD patients were 24.37 ± 11.37, 201.57 ± 130.34, and 1,324.76 ± 1,189.24 mIU/mL respectively. A strong correlation was -observed between logarithm conversions of ∆Emax and AUC0-∞ with correlation coefficients of 0.945. PMI values of blood after TP0463518 administration were elevated to similar or higher levels in comparison with those of umbilical cord blood, which mainly contains liver-derived EPO. CONCLUSIONS: TP0463518 induced dose-dependent EPO production, mainly derived from the liver in HV and CKD patients. These results suggest that TP0463518 is a new strategy for treating anemia in CKD, which can be used regardless of renal functions.


Asunto(s)
Anemia/tratamiento farmacológico , Dihidropiridinas/farmacología , Eritropoyetina/metabolismo , Prolina Dioxigenasas del Factor Inducible por Hipoxia/antagonistas & inhibidores , Hígado/efectos de los fármacos , Piridinas/farmacología , Insuficiencia Renal Crónica/complicaciones , Administración Oral , Adulto , Anciano , Anemia/sangre , Área Bajo la Curva , Dihidropiridinas/uso terapéutico , Relación Dosis-Respuesta a Droga , Femenino , Tasa de Filtración Glomerular , Voluntarios Sanos , Humanos , Prolina Dioxigenasas del Factor Inducible por Hipoxia/metabolismo , Riñón/metabolismo , Riñón/fisiopatología , Hígado/metabolismo , Masculino , Persona de Mediana Edad , Piridinas/uso terapéutico , Diálisis Renal , Insuficiencia Renal Crónica/sangre , Insuficiencia Renal Crónica/terapia , Resultado del Tratamiento , Adulto Joven
10.
Bioorg Med Chem Lett ; 28(10): 1725-1730, 2018 06 01.
Artículo en Inglés | MEDLINE | ID: mdl-29681433

RESUMEN

Prolyl hydroxylase domain-containing protein (PHD) inhibitors are useful as orally administered agents for the treatment of renal anemia. Based on the common structures of known PHD inhibitors, we found novel PHD inhibitor 1 with a 2-[(4-hydroxy-6-oxo-2,3-dihydro-1H-pyridine-5-carbonyl)amino]acetic acid motif. The PHD2-inhibitory activity, lipophilicity (CLogP), and PK profiles (hepatocyte metabolism, protein binding, and/or elimination half-life) of this inhibitor were used as the evaluation index to optimize the structure and eventually discovered clinical candidate 42 as the suitable compound. Compound 42 was demonstrated to promote the production of erythropoietin (EPO) following oral administration in mice and rats. The predicted half-life of this compound in humans was 1.3-5.6 h, therefore, this drug may be expected to administer once daily with few adverse effects caused by excessive EPO production.


Asunto(s)
Ácido Acético/farmacología , Anemia/tratamiento farmacológico , Descubrimiento de Drogas , Prolina Dioxigenasas del Factor Inducible por Hipoxia/antagonistas & inhibidores , Inhibidores de Prolil-Hidroxilasa/farmacología , Insuficiencia Renal Crónica/tratamiento farmacológico , Ácido Acético/administración & dosificación , Ácido Acético/química , Administración Oral , Anemia/metabolismo , Animales , Perros , Relación Dosis-Respuesta a Droga , Humanos , Prolina Dioxigenasas del Factor Inducible por Hipoxia/metabolismo , Ratones , Estructura Molecular , Inhibidores de Prolil-Hidroxilasa/administración & dosificación , Inhibidores de Prolil-Hidroxilasa/química , Ratas , Insuficiencia Renal Crónica/metabolismo , Relación Estructura-Actividad
11.
Comput Biol Med ; 168: 107695, 2024 01.
Artículo en Inglés | MEDLINE | ID: mdl-38061152

RESUMEN

Dice loss is widely used for medical image segmentation, and many improved loss functions have been proposed. However, further Dice loss improvements are still possible. In this study, we reconsidered the use of Dice loss and discovered that Dice loss can be rewritten in the loss function using the cosine similarity through a simple equation transformation. Using this knowledge, we present a novel t-vMF Dice loss based on the t-vMF similarity instead of the cosine similarity. Based on the t-vMF similarity, our proposed Dice loss is formulated in a more compact similarity loss function than the original Dice loss. Furthermore, we present an effective algorithm that automatically determines the parameter κ for the t-vMF similarity using a validation accuracy, called Adaptive t-vMF Dice loss. Using this algorithm, it is possible to apply more compact similarities for easy classes and wider similarities for difficult classes, and we are able to achieve adaptive training based on the accuracy of each class. We evaluated binary segmentation datasets of CVC-ClinicDB and Kvasir-SEG, and multi-class segmentation datasets of Automated Cardiac Diagnosis Challenge and Synapse multi-organ segmentation. Through experiments conducted on four datasets using a five-fold cross-validation, we confirmed that the Dice score coefficient (DSC) was further improved in comparison with the original Dice loss and other loss functions.


Asunto(s)
Algoritmos , Corazón , Procesamiento de Imagen Asistido por Computador
12.
Sci Rep ; 14(1): 3619, 2024 02 13.
Artículo en Inglés | MEDLINE | ID: mdl-38351053

RESUMEN

We present a novel automatic preprocessing and ensemble learning technique for the segmentation of low-quality cell images. Capturing cells subjected to intense light is challenging due to their vulnerability to light-induced cell death. Consequently, microscopic cell images tend to be of low quality and it causes low accuracy for semantic segmentation. This problem can not be satisfactorily solved by classical image preprocessing methods. Therefore, we propose a novel approach of automatic enhancement preprocessing (AEP), which translates an input image into images that are easy to recognize by deep learning. AEP is composed of two deep neural networks, and the penultimate feature maps of the first network are employed as filters to translate an input image with low quality into images that are easily classified by deep learning. Additionally, we propose an automatic weighted ensemble learning (AWEL), which combines the multiple segmentation results. Since the second network predicts segmentation results corresponding to each translated input image, multiple segmentation results can be aggregated by automatically determining suitable weights. Experiments on two types of cell image segmentation confirmed that AEP can translate low-quality cell images into images that are easy to segment and that segmentation accuracy improves using AWEL.


Asunto(s)
Fenómenos Biológicos , Procesamiento de Imagen Asistido por Computador , Procesamiento de Imagen Asistido por Computador/métodos , Redes Neurales de la Computación , Semántica , Muerte Celular
13.
Artículo en Inglés | MEDLINE | ID: mdl-38112883

RESUMEN

PURPOSE: Semantic segmentation of tubular structures, such as blood vessels and cell membranes, is a very difficult task, and it tends to break many predicted regions in the middle. This problem is due to the fact that tubular ground truth is very thin, and the number of pixels is extremely unbalanced compared to the background. METHODS: We present a novel training method using pseudo-labels generated by morphological transformation. Furthermore, we present an attention module using thickened pseudo-labels, called the expanded tube attention (ETA) module. By using the ETA module, the network learns thickened regions based on pseudo-labels at first and then gradually learns thinned original regions while transferring information in the thickened regions as an attention map. RESULTS: Through experiments conducted on retina vessel image datasets using various evaluation measures, we confirmed that the proposed method using ETA modules improved the clDice metric accuracy in comparison with the conventional methods. CONCLUSIONS: We demonstrated that the proposed novel expanded tube attention module using thickened pseudo-labels can achieve easy-to-hard learning.

14.
Sci Rep ; 13(1): 22686, 2023 Dec 19.
Artículo en Inglés | MEDLINE | ID: mdl-38114563

RESUMEN

War is an extreme form of collective human behaviour characterized by coordinated violence. We show that this nature of war is substantiated in the temporal patterns of conflict occurrence that obey power law. The focal metric is the interconflict interval (ICI), the interval between the end of a conflict in a dyad (i.e. a pair of states) and the start of the subsequent conflict in the same dyad. Using elaborate statistical tests, we confirmed that ICI samples compiled from the history of interstate conflicts from 1816 to 2014 followed a power-law distribution. We then demonstrate that the power-law properties of ICIs can be explained by a hypothetical model assuming an information-theoretic formulation of the Clausewitz thesis on war: the use of force is a means of interstate communication. Our findings help us to understand the nature of wars between regular states, the significance of which has increased since the Russian invasion of Ukraine in 2022.

15.
Biochem J ; 438(1): 111-9, 2011 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-21605082

RESUMEN

The cholesterol biosynthetic pathway produces not only sterols but also non-sterol mevalonate metabolites involved in isoprenoid synthesis. Mevalonate metabolites affect transcriptional and post-transcriptional events that in turn affect various biological processes including energy metabolism. In the present study, we examine whether mevalonate metabolites activate PPARγ (peroxisome-proliferator-activated receptor γ), a ligand-dependent transcription factor playing a central role in adipocyte differentiation. In the luciferase reporter assay using both GAL4 chimaera and full-length PPARγ systems, a mevalonate metabolite, FPP (farnesyl pyrophosphate), which is the precursor of almost all isoprenoids and is positioned at branch points leading to the synthesis of other longer-chain isoprenoids, activated PPARγ in a dose-dependent manner. FPP induced the in vitro binding of a co-activator, SRC-1 (steroid receptor co-activator-1), to GST (glutathione transferase)-PPARγ. Direct binding of FPP to PPARγ was also indicated by docking simulation studies. Moreover, the addition of FPP up-regulated the mRNA expression levels of PPARγ target genes during adipocyte differentiation induction. In the presence of lovastatin, an HMG-CoA (3-hydroxy-3-methylglutaryl-CoA) reductase inhibitor, both intracellular FPP levels and PPARγ-target gene expressions were decreased. In contrast, the increase in intracellular FPP level after the addition of zaragozic acid, a squalene synthase inhibitor, induced PPARγ-target gene expression. The addition of FPP and zaragozic acid promotes lipid accumulation during adipocyte differentiation. These findings indicated that FPP might function as an endogenous PPARγ agonist and regulate gene expression in adipocytes.


Asunto(s)
Adipocitos/metabolismo , PPAR gamma/agonistas , PPAR gamma/metabolismo , Fosfatos de Poliisoprenilo/farmacología , Sesquiterpenos/farmacología , Células 3T3-L1 , Adipocitos/citología , Adipocitos/efectos de los fármacos , Animales , Western Blotting , Diferenciación Celular/efectos de los fármacos , Humanos , Inhibidores de Hidroximetilglutaril-CoA Reductasas/farmacología , Lovastatina/farmacología , Luciferasas/metabolismo , Ácido Mevalónico/farmacología , Ratones , Coactivador 1 de Receptor Nuclear/genética , Coactivador 1 de Receptor Nuclear/metabolismo , PPAR gamma/genética , Regiones Promotoras Genéticas , ARN Mensajero/genética , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
16.
Sci Rep ; 12(1): 20840, 2022 12 02.
Artículo en Inglés | MEDLINE | ID: mdl-36460708

RESUMEN

This study presents a novel framework for classifying and visualizing pneumonia induced by COVID-19 from CT images. Although many image classification methods using deep learning have been proposed, in the case of medical image fields, standard classification methods are unable to be used in some cases because the medical images that belong to the same category vary depending on the progression of the symptoms and the size of the inflamed area. In addition, it is essential that the models used be transparent and explainable, allowing health care providers to trust the models and avoid mistakes. In this study, we propose a classification method using contrastive learning and an attention mechanism. Contrastive learning is able to close the distance for images of the same category and generate a better feature space for classification. An attention mechanism is able to emphasize an important area in the image and visualize the location related to classification. Through experiments conducted on two-types of classification using a three-fold cross validation, we confirmed that the classification accuracy was significantly improved; in addition, a detailed visual explanation was achieved comparison with conventional methods.


Asunto(s)
COVID-19 , Humanos , COVID-19/diagnóstico por imagen , Personal de Salud , Confianza , Proyectos de Investigación , Tomografía Computarizada por Rayos X
17.
ACS Macro Lett ; 10(5): 623-627, 2021 May 18.
Artículo en Inglés | MEDLINE | ID: mdl-35570755

RESUMEN

To visualize and simultaneously quantify the necking behavior of crystalline polymer films during uniaxial stretching, tetraarylsuccinonitrile (TASN) moieties were introduced into polymers at the center of the main chain. TASN can produce a relatively stable radical that emits yellow fluorescence in response to mechanical stress. During the uniaxial elongation test of the TASN-centered crystalline polymers, the yellow fluorescence derived from the dissociated TASN radicals was used for microscale observations that showed the orientation of the polymer chains in the stretching direction. Furthermore, by comparing the radical generation in linear and star-shaped TASN-centered crystalline polymers during their tensile deformation, we found that the TASN dissociation ratio is higher in the star-shaped polymer, which has more chains connected to the lamellar crystal. Thus, the microforces generated in the amorphous region during uniaxial stretching were probed via the use of TASN, which allowed a direct visualization of the necking initiation and propagation processes as well as a quantification via electron paramagnetic resonance spectroscopy.

18.
Chem Commun (Camb) ; 57(23): 2899-2902, 2021 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-33616134

RESUMEN

A non-symmetric radical-type mechanophore (CF/ABF) was synthesized by molecular crossing between two radical-type mechanophores. The thermal stability and mechanoresponsiveness of CF/ABF were found to be tunable by altering the properties of the parent RMs. The CF/ABF-centred polymers showed mixed mechanochromism derived from the simultaneous generation of two radical species.

19.
Nat Commun ; 12(1): 126, 2021 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-33402691

RESUMEN

The growth of lamellar crystals has been studied in particular for spherulites in polymeric materials. Even though such spherulitic structures and their growth are of crucial importance for the mechanical and optical properties of the resulting polymeric materials, several issues regarding the residual stress remain unresolved in the wider context of crystal growth. To gain further insight into micro-mechanical forces during the crystallization process of lamellar crystals in polymeric materials, herein, we introduce tetraarylsuccinonitrile (TASN), which generates relatively stable radicals with yellow fluorescence upon homolytic cleavage at the central C-C bond in response to mechanical stress, into crystalline polymers. The obtained crystalline polymers with TASN at the center of the polymer chain allow not only to visualize the stress arising from micro-mechanical forces during polymer crystallization via fluorescence microscopy but also to evaluate the micro-mechanical forces upon growing polymer lamellar crystals by electron paramagnetic resonance, which is able to detect the radicals generated during polymer crystallization.

20.
Sci Rep ; 11(1): 18748, 2021 09 21.
Artículo en Inglés | MEDLINE | ID: mdl-34548525

RESUMEN

Serum fatty acids (FAs) exist in the four lipid fractions of triglycerides (TGs), phospholipids (PLs), cholesteryl esters (CEs) and free fatty acids (FFAs). Total fatty acids (TFAs) indicate the sum of FAs in them. In this study, four statistical analysis methods, which are independent component analysis (ICA), factor analysis, common principal component analysis (CPCA) and principal component analysis (PCA), were conducted to uncover food sources of FAs among the four lipid fractions (CE, FFA, and TG + PL). Among the methods, ICA provided the most suggestive results. To distinguish the animal fat intake from endogenous fatty acids, FFA variables in ICA and factor analysis were studied. ICA provided more distinct suggestions of FA food sources (endogenous, plant oil intake, animal fat intake, and fish oil intake) than factor analysis. Moreover, ICA was discovered as a new approach to distinguish animal FAs from endogenous FAs, which will have an impact on epidemiological studies. In addition, the correlation coefficients between a published dataset of food FA compositions and the loading values obtained in the present ICA study suggested specific foods as serum FA sources. In conclusion, we found that ICA is a useful tool to uncover food sources of serum FAs.


Asunto(s)
Ácidos Grasos/análisis , Análisis de los Alimentos , Cromatografía de Gases/métodos , Análisis Factorial , Ácidos Grasos/sangre , Humanos
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