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1.
J Am Chem Soc ; 144(11): 5067-5073, 2022 03 23.
Artículo en Inglés | MEDLINE | ID: mdl-35258954

RESUMEN

Aggregation of amyloidogenic proteins causing neurodegenerative diseases is an uncontrollable and contagious process that is often associated with lipid membranes in a highly complex physiological environment. Although several approaches using natural cells and membrane models have been reported, systematic investigations focusing on the association with the membranes are highly challenging, mostly because of the lack of proper molecular tools. Here, we report a new supramolecular approach using a synthetic cell system capable of controlling the initiation of protein aggregation and mimicking various conditions of lipid membranes, thereby enabling systematic investigations of membrane-dependent effects on protein aggregation by visualization. Extending this strategy through concurrent use of synthetic cells and natural cells, we demonstrate the potential of this approach for systematic and in-depth studies on interrogating inter- and intracellularly transmittable protein aggregation. Thus, this new approach offers opportunities for gaining insights into the pathological implications of contagious protein aggregation associated with membranes for neurotoxicity.


Asunto(s)
Células Artificiales , Proteínas Amiloidogénicas/metabolismo , Membrana Celular/metabolismo , Humanos , Lípidos , Agregado de Proteínas , Agregación Patológica de Proteínas
2.
Int J Mol Sci ; 22(9)2021 Apr 23.
Artículo en Inglés | MEDLINE | ID: mdl-33922648

RESUMEN

Transthyretin (TTR) is an essential transporter of a thyroid hormone and a holo-retinol binding protein, found abundantly in human plasma and cerebrospinal fluid. In addition, this protein is infamous for its amyloidogenic propensity, causing various amyloidoses in humans, such as senile systemic amyloidosis, familial amyloid polyneuropathy, and familial amyloid cardiomyopathy. It has been known for over two decades that decreased stability of the native tetrameric conformation of TTR is the main cause of these diseases. Yet, mechanistic details on the amyloidogenic transformation of TTR were not clear until recent multidisciplinary investigations on various structural states of TTR. In this review, we discuss recent advancements in the structural understanding of TTR misfolding and amyloidosis processes. Special emphasis has been laid on the observations of novel structural features in various amyloidogenic species of TTR. In addition, proteolysis-induced fragmentation of TTR, a recently proposed mechanism facilitating TTR amyloidosis, has been discussed in light of its structural consequences and relevance to acknowledge the amyloidogenicity of TTR.


Asunto(s)
Neuropatías Amiloides Familiares/patología , Amiloide/química , Prealbúmina/química , Pliegue de Proteína , Neuropatías Amiloides Familiares/metabolismo , Animales , Humanos
3.
Int J Mol Sci ; 22(7)2021 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-33800546

RESUMEN

Thyromimetics, whose physicochemical characteristics are analog to thyroid hormones (THs) and their derivatives, are promising candidates as novel therapeutics for neurodegenerative and metabolic pathologies. In particular, sobetirome (GC-1), one of the initial halogen-free thyromimetics, and newly synthesized IS25 and TG68, with optimized ADME-Tox profile, have recently attracted attention owing to their superior therapeutic benefits, selectivity, and enhanced permeability. Here, we further explored the functional capabilities of these thyromimetics to inhibit transthyretin (TTR) amyloidosis. TTR is a homotetrameric transporter protein for THs, yet it is also responsible for severe amyloid fibril formation, which is facilitated by tetramer dissociation into non-native monomers. By combining nuclear magnetic resonance (NMR) spectroscopy, computational simulation, and biochemical assays, we found that GC-1 and newly designed diphenyl-methane-based thyromimetics, namely IS25 and TG68, are TTR stabilizers and efficient suppressors of TTR aggregation. Based on these observations, we propose the novel potential of thyromimetics as a multi-functional therapeutic molecule for TTR-related pathologies, including neurodegenerative diseases.


Asunto(s)
Neuropatías Amiloides Familiares/tratamiento farmacológico , Compuestos de Bifenilo/química , Metano/química , Hormonas Tiroideas/farmacología , Acetatos/farmacología , Amiloide/metabolismo , Benzotiazoles/química , Diseño de Fármacos , Humanos , Espectroscopía de Resonancia Magnética , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Permeabilidad , Fenoles/farmacología , Prealbúmina/metabolismo , Unión Proteica , Pliegue de Proteína , Proteínas Recombinantes/química , Hormonas Tiroideas/química
4.
Int J Mol Sci ; 21(22)2020 Nov 17.
Artículo en Inglés | MEDLINE | ID: mdl-33212973

RESUMEN

Transthyretin (TTR), previously named prealbumin is a plasma protein secreted mainly by the liver and choroid plexus (CP) that is a carrier for thyroid hormones (THs) and retinol (vitamin A). The structure of TTR, with four monomers rich in ß-chains in a globular tetrameric protein, accounts for the predisposition of the protein to aggregate in fibrils, leading to a rare and severe disease, namely transthyretin amyloidosis (ATTR). Much effort has been made and still is required to find new therapeutic compounds that can stabilize TTR ("kinetic stabilization") and prevent the amyloid genetic process. Moreover, TTR is an interesting therapeutic target for neurodegenerative diseases due to its recognized neuroprotective properties in the cognitive impairment context and interestingly in Alzheimer's disease (AD). Much evidence has been collected regarding the neuroprotective effects in AD, including through in vitro and in vivo studies as well as a wide range of clinical series. Despite this supported hypothesis of neuroprotection for TTR, the mechanisms are still not completely clear. The aim of this review is to highlight the most relevant findings on the neuroprotective role of TTR, and to summarize the recent progress on the development of TTR tetramer stabilizers.


Asunto(s)
Enfermedad de Alzheimer , Neuropatías Amiloides Familiares , Prealbúmina , Enfermedad de Alzheimer/genética , Enfermedad de Alzheimer/metabolismo , Enfermedad de Alzheimer/patología , Enfermedad de Alzheimer/terapia , Neuropatías Amiloides Familiares/genética , Neuropatías Amiloides Familiares/metabolismo , Neuropatías Amiloides Familiares/patología , Neuropatías Amiloides Familiares/terapia , Humanos , Prealbúmina/genética , Prealbúmina/metabolismo , Estabilidad Proteica
5.
Sensors (Basel) ; 18(11)2018 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-30405087

RESUMEN

The automatic classification of cross-country (XC) skiing techniques using data from wearable sensors has the potential to provide insights for optimizing the performance of professional skiers. In this paper, we propose a unified deep learning model for classifying eight techniques used in classical and skating styles XC-skiing and optimize this model for the number of gyroscope sensors by analyzing the results for five different configurations of sensors. We collected data of four professional skiers on outdoor flat and natural courses. The model is first trained over the flat course data of two skiers and tested over the flat and natural course data of a third skier in a leave-one-out fashion, resulting in a mean accuracy of ~80% over three combinations. Secondly, the model is trained over the flat course data of three skiers and tested over flat course and natural course data of one new skier, resulting in a mean accuracy of 87.2% and 95.1% respectively, using the optimal sensor configuration (five gyroscope sensors: both hands, both feet, and the pelvis). High classification accuracy obtained using both approaches indicates that this deep learning model has the potential to be deployed for real-time classification of skiing techniques by professional skiers and coaches.


Asunto(s)
Técnicas Biosensibles/instrumentación , Esquí/normas , Dispositivos Electrónicos Vestibles , Adulto , Rendimiento Atlético/fisiología , Fenómenos Biomecánicos , Aprendizaje Profundo , Humanos , Masculino
6.
J Phys Ther Sci ; 29(5): 941-945, 2017 May.
Artículo en Inglés | MEDLINE | ID: mdl-28603377

RESUMEN

[Purpose] The purpose of this study was to examine the effect of a 40-minute race on muscle activity and spatiotemporal cycle variables at four-time points during a 12-km roller skiing test using the double-poling technique. [Subjects and Methods] Five elite cross-country (XC) skiers on the Korean National reserve team participated in the study. Part of a biathlon course that consisted of both flat land and slopes was selected, and three measurements were recorded after every 4-km lap. Spatiotemporal variables, mean frequency and mean amplitude of 6 muscles were the chosen computational parameters. [Results] Significant differences were observed in cycle time and rate. The mean frequency of the upper-body muscles exhibited declining trends, with statistically significant differences for the triceps brachii. In addition, there were significant differences in the mean amplitude of the tibialis anterior and gastrocnemius. The activity of the triceps brachii, tibialis anterior, and gastrocnemius showed some degree of dependence on the technique. [Conclusion] Training and race strategies that improve the function of elbow extensors and ankle dorsiflexors are important in XC skiing; the application of roller-ski training research to actual XC skiing competitions is needed.

7.
Biochim Biophys Acta ; 1853(6): 1416-28, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25450980

RESUMEN

Proteins containing iron-sulfur (Fe-S) clusters arose early in evolution and are essential to life. Organisms have evolved machinery consisting of specialized proteins that operate together to assemble Fe-S clusters efficiently so as to minimize cellular exposure to their toxic constituents: iron and sulfide ions. To date, the best studied system is the iron-sulfur cluster (isc) operon of Escherichia coli, and the eight ISC proteins it encodes. Our investigations over the past five years have identified two functional conformational states for the scaffold protein (IscU) and have shown that the other ISC proteins that interact with IscU prefer to bind one conformational state or the other. From analyses of the NMR spectroscopy-derived network of interactions of ISC proteins, small-angle X-ray scattering (SAXS) data, chemical crosslinking experiments, and functional assays, we have constructed working models for Fe-S cluster assembly and delivery. Future work is needed to validate and refine what has been learned about the E. coli system and to extend these findings to the homologous Fe-S cluster biosynthetic machinery of yeast and human mitochondria. This article is part of a Special Issue entitled: Fe/S proteins: Analysis, structure, function, biogenesis and diseases.


Asunto(s)
Proteínas de Escherichia coli/química , Proteínas Hierro-Azufre/química , Espectroscopía de Resonancia Magnética/métodos , Dispersión del Ángulo Pequeño , Difracción de Rayos X/métodos , Reactivos de Enlaces Cruzados/química , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Humanos , Proteínas Hierro-Azufre/genética , Proteínas Hierro-Azufre/metabolismo , Operón , Unión Proteica
8.
Sensors (Basel) ; 16(4): 463, 2016 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-27043579

RESUMEN

In this paper, we present an analysis to identify a sensor location for an inertial measurement unit (IMU) on the body of a skier and propose the best location to capture turn motions for training. We also validate the manner in which the data from the IMU sensor on the proposed location can characterize ski turns and performance with a series of statistical analyses, including a comparison with data collected from foot pressure sensors. The goal of the study is to logically identify the ideal location on the skier's body to attach the IMU sensor and the best use of the data collected for the skier. The statistical analyses and the hierarchical clustering method indicate that the pelvis is the best location for attachment of an IMU, and numerical validation shows that the data collected from this location can effectively estimate the performance and characteristics of the skier. Moreover, placement of the sensor at this location does not distract the skier's motion, and the sensor can be easily attached and detached. The findings of this study can be used for the development of a wearable device for the routine training of professional skiers.


Asunto(s)
Técnicas Biosensibles/instrumentación , Monitoreo Fisiológico/instrumentación , Movimiento/fisiología , Esquí/fisiología , Adulto , Rendimiento Atlético/fisiología , Fenómenos Biomecánicos , Humanos , Masculino
9.
Angew Chem Int Ed Engl ; 55(52): 16168-16171, 2016 12 23.
Artículo en Inglés | MEDLINE | ID: mdl-27885756

RESUMEN

Mutations in the protein transthyretin can cause as well as protect individuals from transthyretin amyloidosis, an incurable fatal inherited disease. Little is known, however, about the structural basis of pathogenic and clinically protective transthyretin mutants. Here we determined the solution structure of a transthyretin monomer that carries the clinically important T119M mutation. The structure displays a non-native arrangement that is distinct from all known structures of transthyretin and highlights the importance of high-resolution studies in solution for understanding molecular processes that lead to amyloid diseases.


Asunto(s)
Mutación , Prealbúmina/química , Prealbúmina/genética , Humanos , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Conformación Proteica
10.
Proc Natl Acad Sci U S A ; 109(2): 454-9, 2012 Jan 10.
Artículo en Inglés | MEDLINE | ID: mdl-22203963

RESUMEN

The scaffold protein for iron-sulfur cluster assembly, apo-IscU, populates two interconverting conformational states, one disordered (D) and one structured (S) as revealed by extensive NMR assignments. At pH 8 and 25 °C, approximately 70% of the protein is S, and the lifetimes of the states are 1.3 s (S) and 0.50 s (D). Zn(II) and Fe(II) each bind and stabilize structured (S-like) states. Single amino acid substitutions at conserved residues were found that shift the equilibrium toward either the S or the D state. Cluster assembly takes place in the complex between IscU and the cysteine desulfurase, IscS, and our NMR studies demonstrate that IscS binds preferentially the D form of apo-IscU. The addition of 10% IscS to IscU was found to greatly increase H/D exchange at protected amides of IscU, to increase the rate of the S â†’ D reaction, and to decrease the rate of the D â†’ S reaction. In the saturated IscU:IscS complex, IscU is largely disordered. In vitro cluster assembly reactions provided evidence for the functional importance of the S&lrarr2;D equilibrium. IscU variants that favor the S state were found to undergo a lag phase, not observed with the wild type, that delayed cluster assembly; variants that favor the D state were found to assemble less stable clusters at an intermediate rate without the lag. It appears that IscU has evolved to exist in a disordered conformational state that is the initial substrate for the desulfurase and to convert to a structured state that stabilizes the cluster once it is assembled.


Asunto(s)
Liasas de Carbono-Azufre/metabolismo , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Proteínas Hierro-Azufre/metabolismo , Modelos Moleculares , Complejos Multiproteicos/metabolismo , Conformación Proteica , Sustitución de Aminoácidos , Liasas de Carbono-Azufre/química , Proteínas de Escherichia coli/genética , Concentración de Iones de Hidrógeno , Proteínas Hierro-Azufre/química , Proteínas Hierro-Azufre/genética , Espectroscopía de Resonancia Magnética , Complejos Multiproteicos/química , Temperatura
11.
Biochemistry ; 53(32): 5290-7, 2014 Aug 19.
Artículo en Inglés | MEDLINE | ID: mdl-25055301

RESUMEN

IscU, the scaffold protein for the major iron-sulfur cluster biosynthesis pathway in microorganisms and mitochondria (ISC pathway), plays important roles in the formation of [2Fe-2S] and [4Fe-4S] clusters and their delivery to acceptor apo-proteins. Our laboratory has shown that IscU populates two distinct, functionally relevant conformational states, a more structured state (S) and a more dynamic state (D), that differ by cis/trans isomerizations about two peptidyl-prolyl peptide bonds [Kim, J. H., Tonelli, M., and Markley, J. L. (2012) Proc. Natl. Acad. Sci. U.S.A., 109, 454-459. Dai Z., Tonelli, M., and Markley, J. L. (2012) Biochemistry, 51, 9595-9602. Cai, K., Frederick, R. O., Kim, J. H., Reinen, N. M., Tonelli, M., and Markley, J. L. (2013) J. Biol. Chem., 288, 28755-28770]. Here, we report our findings on the pH dependence of the D ⇄ S equilibrium for Escherichia coli IscU in which the D-state is stabilized at low and high pH values. We show that the lower limb of the pH dependence curve results from differences in the pKa values of two conserved histidine residues (His10 and His105) in the two states. The net proton affinity of His10 is about 50 times higher and that of His105 is 13 times higher in the D-state than in the S-state. The origin of the high limb of the D ⇄ S pH dependence remains to be determined. These results show that changes in proton inventory need to be taken into account in the steps in iron-sulfur cluster assembly and transfer that involve transitions of IscU between its S- and D-states.


Asunto(s)
Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Histidina/química , Proteínas Hierro-Azufre/química , Proteínas Hierro-Azufre/metabolismo , Secuencia de Aminoácidos , Secuencia Conservada , Concentración de Iones de Hidrógeno , Conformación Proteica
12.
Biochemistry ; 53(46): 7148-59, 2014 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-25372495

RESUMEN

Proteins from the isc operon of Escherichia coli constitute the machinery used to synthesize iron-sulfur (Fe-S) clusters for delivery to recipient apoproteins. Efficient and rapid [2Fe-2S] cluster transfer from the holo-scaffold protein IscU depends on ATP hydrolysis in the nucleotide-binding domain (NBD) of HscA, a specialized Hsp70-type molecular chaperone with low intrinsic ATPase activity (0.02 min(-1) at 25 °C, henceforth reported in units of min(-1)). HscB, an Hsp40-type cochaperone, binds to HscA and stimulates ATP hydrolysis to promote cluster transfer, yet while the interactions between HscA and HscB have been investigated, the role of HscA's interdomain linker in modulating ATPase activity has not been explored. To address this issue, we created three variants of the 40 kDa NBD of HscA: NBD alone (HscA386), NBD with a partial linker (HscA389), and NBD with the full linker (HscA395). We found that the rate of ATP hydrolysis of HscA395 (0.45 min(-1)) is nearly 15-fold higher than that of HscA386 (0.035 min(-1)), although their apparent affinities for ATP are equivalent. HscA395, which contains the full covalently linked linker peptide, exhibited intrinsic tryptophan fluorescence emission and basal thermostability that were higher than those of HscA386. Furthermore, HscA395 displayed narrower (1)H(N) line widths in its two-dimensional (1)H-(15)N TROSY-HSQC spectrum in comparison to HscA386, indicating that the peptide in the cis configuration binds to and stabilizes the structure of the NBD. The addition to HscA386 of a synthetic peptide with a sequence identical to that of the interdomain linker (L(387)LLDVIPLS(395)) stimulated its ATPase activity and induced widespread NMR chemical shift perturbations indicative of a binding interaction in the trans configuration.


Asunto(s)
Adenosina Trifosfato/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/metabolismo , Proteínas HSP70 de Choque Térmico/metabolismo , Secuencia de Aminoácidos , Sitios de Unión , Escherichia coli/química , Proteínas de Escherichia coli/química , Proteínas HSP70 de Choque Térmico/química , Hidrólisis , Modelos Moleculares , Estabilidad Proteica , Estructura Terciaria de Proteína
13.
J Biol Chem ; 288(40): 28755-70, 2013 Oct 04.
Artículo en Inglés | MEDLINE | ID: mdl-23940031

RESUMEN

Human ISCU is the scaffold protein for mitochondrial iron-sulfur (Fe-S) cluster biogenesis and transfer. NMR spectra have revealed that ISCU populates two conformational states; that is, a more structured state (S) and a partially disordered state (D). We identified two single amino acid substitutions (D39V and N90A) that stabilize the S-state and two (D39A and H105A) that stabilize the D-state. We isolated the two constituent proteins of the human cysteine desulfurase complex (NFS1 and ISD11) separately and used NMR spectroscopy to investigate their interaction with ISCU. We found that ISD11 does not interact directly with ISCU. By contrast, NFS1 binds preferentially to the D-state of ISCU as does the NFS1-ISD11 complex. An in vitro Fe-S cluster assembly assay showed that [2Fe-2S] and [4Fe-4S] clusters are assembled on ISCU when catalyzed by NFS1 alone and at a higher rate when catalyzed by the NFS1-ISD11 complex. The DnaK-type chaperone (mtHSP70) and DnaJ-type co-chaperone (HSC20) are involved in the transfer of clusters bound to ISCU to acceptor proteins in an ATP-dependent reaction. We found that the ATPase activity of mtHSP70 is accelerated by HSC20 and further accelerated by HSC20 plus ISCU. NMR studies have shown that mtHSP70 binds preferentially to the D-state of ISCU and that HSC20 binds preferentially to the S-state of ISCU.


Asunto(s)
Liasas de Carbono-Azufre/metabolismo , Proteínas del Choque Térmico HSP110/metabolismo , Proteínas Hierro-Azufre/química , Proteínas Hierro-Azufre/metabolismo , Mitocondrias/metabolismo , Chaperonas Moleculares/metabolismo , Adenosina Trifosfatasas/metabolismo , Secuencia de Aminoácidos , Bioensayo , Cromatografía en Gel , Dicroismo Circular , Electroforesis en Gel de Poliacrilamida , Humanos , Proteínas Reguladoras del Hierro/metabolismo , Espectroscopía de Resonancia Magnética , Modelos Biológicos , Datos de Secuencia Molecular , Proteínas Mutantes/metabolismo , Unión Proteica , Conformación Proteica , Alineación de Secuencia
14.
J Am Chem Soc ; 136(33): 11586-9, 2014 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-25080945

RESUMEN

The structural mechanism by which Hsp70-type chaperones interact with Hsp40-type co-chaperones has been of great interest, yet still remains a matter of debate. Here, we used solution NMR spectroscopy to investigate the ATP-/ADP-dependent interactions between Escherichia coli HscA and HscB, the specialized Hsp70/Hsp40 molecular chaperones that mediate iron-sulfur cluster transfer. We observed that NMR signals assigned to amino acid residues in the J-domain and its "HPD" motif of HscB broadened severely upon the addition of ATP-bound HscA, but these signals were not similarly broadened by ADP-bound HscA or the isolated nucleotide binding domain of HscA complexed with either ATP or ADP. An HscB variant with an altered HPD motif, HscB(H32A,P33A,D34A), failed to manifest WT-like NMR signal perturbations and also abolished WT-like stimulation of ATP hydrolysis by HscA. In addition, residues 153-171 in the C-terminal region of HscB exhibited NMR signal perturbations upon interaction with HscA, alone or complexed with ADP or ATP. These results demonstrate that the HPD motif in the J-domain of HscB directly interacts with ATP-bound HscA and suggest that a second, less nucleotide-dependent binding site for HscA resides in the C-terminal region of HscB.


Asunto(s)
Proteínas del Choque Térmico HSP40/metabolismo , Proteínas HSP70 de Choque Térmico/metabolismo , Proteínas Hierro-Azufre/biosíntesis , Proteínas Hierro-Azufre/química , Nucleótidos/química , Nucleótidos/metabolismo , Adenosina Difosfato/química , Adenosina Trifosfato/química , Escherichia coli/química , Proteínas del Choque Térmico HSP40/química , Proteínas HSP70 de Choque Térmico/química , Resonancia Magnética Nuclear Biomolecular
15.
J Am Chem Soc ; 136(22): 7933-42, 2014 Jun 04.
Artículo en Inglés | MEDLINE | ID: mdl-24810328

RESUMEN

The Escherichia coli isc operon encodes key proteins involved in the biosynthesis of iron-sulfur (Fe-S) clusters. Whereas extensive studies of most ISC proteins have revealed their functional properties, the role of IscX (also dubbed YfhJ), a small acidic protein encoded by the last gene in the operon, has remained in question. Previous studies showed that IscX binds iron ions and interacts with the cysteine desulfurase (IscS) and the scaffold protein for cluster assembly (IscU), and it has been proposed that IscX functions either as an iron supplier or a regulator of Fe-S cluster biogenesis. We have used a combination of NMR spectroscopy, small-angle X-ray scattering (SAXS), chemical cross-linking, and enzymatic assays to enlarge our understanding of the interactions of IscX with iron ions, IscU, and IscS. We used chemical shift perturbation to identify the binding interfaces of IscX and IscU in their complex. NMR studies showed that Fe(2+) from added ferrous ammonium sulfate binds IscX much more avidly than does Fe(3+) from added ferric ammonium citrate and that Fe(2+) strengthens the interaction between IscX and IscU. We found that the addition of IscX to the IscU-IscS binary complex led to the formation of a ternary complex with reduced cysteine desulfurase activity, and we determined a low-resolution model for that complex from a combination of NMR and SAXS data. We postulate that the inhibition of cysteine desulfurase activity by IscX serves to reduce unproductive conversion of cysteine to alanine. By incorporating these new findings with results from prior studies, we propose a detailed mechanism for Fe-S cluster assembly in which IscX serves both as a donor of Fe(2+) and as a regulator of cysteine desulfurase activity.


Asunto(s)
Proteínas de Escherichia coli/química , Escherichia coli/química , Hierro/química , Azufre/química , Sitios de Unión , Liasas de Carbono-Azufre/química , Reactivos de Enlaces Cruzados , Escherichia coli/metabolismo , Hierro/metabolismo , Proteínas de Unión a Hierro/química , Azufre/metabolismo , Frataxina
16.
J Biol Chem ; 287(37): 31406-13, 2012 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-22782893

RESUMEN

The Escherichia coli protein IscU serves as the scaffold for Fe-S cluster assembly and the vehicle for Fe-S cluster transfer to acceptor proteins, such as apoferredoxin. IscU populates two conformational states in solution, a structured conformation (S) that resembles the conformation of the holoprotein IscU-[2Fe-2S] and a dynamically disordered conformation (D) that does not bind metal ions. NMR spectroscopic results presented here show that the specialized Hsp70 chaperone (HscA), alone or as the HscA-ADP complex, preferentially binds to and stabilizes the D-state of IscU. IscU is released when HscA binds ATP. By contrast, the J-protein HscB binds preferentially to the S-state of IscU. Consistent with these findings, we propose a mechanism in which cluster transfer is coupled to hydrolysis of ATP bound to HscA, conversion of IscU to the D-state, and release of HscB.


Asunto(s)
Proteínas de Escherichia coli/química , Escherichia coli/química , Proteínas HSP70 de Choque Térmico/química , Proteínas de Choque Térmico/química , Proteínas Hierro-Azufre/química , Complejos Multiproteicos/química , Adenosina Trifosfato/química , Adenosina Trifosfato/genética , Adenosina Trifosfato/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Proteínas HSP70 de Choque Térmico/genética , Proteínas HSP70 de Choque Térmico/metabolismo , Proteínas de Choque Térmico/genética , Proteínas de Choque Térmico/metabolismo , Proteínas Hierro-Azufre/genética , Proteínas Hierro-Azufre/metabolismo , Complejos Multiproteicos/genética , Complejos Multiproteicos/metabolismo , Resonancia Magnética Nuclear Biomolecular , Unión Proteica
17.
J Am Chem Soc ; 135(22): 8117-20, 2013 Jun 05.
Artículo en Inglés | MEDLINE | ID: mdl-23682711

RESUMEN

Escherichia coli [2Fe-2S]-ferredoxin (Fdx) is encoded by the isc operon along with other proteins involved in the 'house-keeping' mechanism of iron-sulfur cluster biogenesis. Although it has been proposed that Fdx supplies electrons to reduce sulfane sulfur (S(0)) produced by the cysteine desulfurase (IscS) to sulfide (S(2-)) as required for the assembly of Fe-S clusters on the scaffold protein (IscU), direct experimental evidence for the role of Fdx has been lacking. Here, we show that Fdx (in either oxidation state) interacts directly with IscS. The interaction face on Fdx was found to include residues close to its Fe-S cluster. In addition, C328 of IscS, the residue known to pick up sulfur from the active site of IscS and deliver it to the Cys residues of IscU, formed a disulfide bridge with Fdx in the presence of an oxidizing agent. Electrons from reduced Fdx were transferred to IscS only in the presence of l-cysteine, but not to the C328S variant. We found that Fdx, IscU, and CyaY (the bacterial frataxin) compete for overlapping binding sites on IscS. This mutual exclusion explains the mechanism by which CyaY inhibits Fe-S cluster biogenesis. These results (1) show that reduced Fdx supplies one electron to the IscS complex as S(0) is produced by the enzymatic conversion of Cys to Ala and (2) explain the role of Fdx as a member of the isc operon.


Asunto(s)
Liasas de Carbono-Azufre/metabolismo , Electrones , Ferredoxinas/metabolismo , Proteínas de Unión a Hierro/metabolismo , Hierro/metabolismo , Azufre/metabolismo , Sitios de Unión , Liasas de Carbono-Azufre/química , Cristalografía por Rayos X , Escherichia coli/química , Escherichia coli/metabolismo , Ferredoxinas/química , Hierro/química , Proteínas de Unión a Hierro/química , Modelos Moleculares , Azufre/química , Frataxina
18.
Comput Struct Biotechnol J ; 21: 4717-4728, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37822560

RESUMEN

Aggregation and fibrillization of transthyretin (TTR) is a fatal pathogenic process that can cause cardiomyopathic and polyneuropathic diseases in humans. Although several therapeutic strategies have been designed to prevent and treat related pathological events, there is still an urgent need to develop better strategies to improve potency and wider applicability. Here, we present our study demonstrating that 3-iodothyronamine (T1AM) and selected thyronamine-like compounds can effectively prevent TTR aggregation. T1AM is one of the thyroid hormone (TH) metabolites, and T1AM and its analogs, such as SG2, SG6, and SG12, are notable molecules for their beneficial activities against metabolic disorders and neurodegeneration. Using nuclear magnetic resonance (NMR) spectroscopy and biochemical analysis, we confirmed that T1AM analogs could bind to and suppress acid-induced aggregation of TTR. In addition, we employed computational approaches to further understand the detailed mechanisms of the interaction between T1AM analogs and TTR. This study demonstrates that T1AM analogs, whose beneficial effects against several pathological processes have already been proven, may have additional benefits against TTR aggregation and fibrillization. Moreover, we believe that our work provides invaluable insights to enhance the pleiotropic activity of T1AM and structurally related analogs, relevant for their therapeutic potential, with particular reference to the ability to prevent TTR aggregation.

19.
Biochemistry ; 51(28): 5557-63, 2012 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-22734684

RESUMEN

The highly conserved protein, IscU, serves as the scaffold for iron-sulfur cluster (ISC) assembly in the ISC system common to bacteria and eukaryotic mitochondria. The apo-form of IscU from Escherichia coli has been shown to populate two slowly interconverting conformational states: one structured (S) and one dynamically disordered (D). Furthermore, single-site amino acid substitutions have been shown to shift the equilibrium between the metamorphic states. Here, we report three-dimensional structural models derived from NMR spectroscopy for the S-state of wild-type (WT) apo-IscU, determined under conditions where the protein was 80% in the S-state and 20% in the D-state, and for the S-state of apo-IscU(D39A), determined under conditions where the protein was ~95% in the S-state. We have used these structures in interpreting the effects of single site amino acid substitutions that alter %S = (100 × [S])/([S] + [D]). These include different residues at the same site, %S: D39V > D39L > D39A > D39G ≈ WT, and alanine substitutions at different sites, %S: N90A > S107A ≈ E111A > WT. Hydrophobic residues at residue 39 appear to stabilize the S-state by decreasing the flexibility of the loops that contain the conserved cysteine residues. The alanine substitutions at positions 90, 107, and 111, on the other hand, stabilize the protein without affecting the loop dynamics. In general, the stability of the S-state correlates with the compactness and thermal stability of the variant.


Asunto(s)
Proteínas de Escherichia coli/química , Proteínas Hierro-Azufre/química , Sustitución de Aminoácidos , Apoproteínas/química , Dicroismo Circular , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Conformación Proteica , Estabilidad Proteica , Soluciones
20.
Bioinformatics ; 27(12): 1727-8, 2011 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-21511715

RESUMEN

SUMMARY: PONDEROSA (Peak-picking Of Noe Data Enabled by Restriction of Shift Assignments) accepts input information consisting of a protein sequence, backbone and sidechain NMR resonance assignments, and 3D-NOESY ((13)C-edited and/or (15)N-edited) spectra, and returns assignments of NOESY crosspeaks, distance and angle constraints, and a reliable NMR structure represented by a family of conformers. PONDEROSA incorporates and integrates external software packages (TALOS+, STRIDE and CYANA) to carry out different steps in the structure determination. PONDEROSA implements internal functions that identify and validate NOESY peak assignments and assess the quality of the calculated three-dimensional structure of the protein. The robustness of the analysis results from PONDEROSA's hierarchical processing steps that involve iterative interaction among the internal and external modules. PONDEROSA supports a variety of input formats: SPARKY assignment table (.shifts) and spectrum file formats (.ucsf), XEASY proton file format (.prot), and NMR-STAR format (.star). To demonstrate the utility of PONDEROSA, we used the package to determine 3D structures of two proteins: human ubiquitin and Escherichia coli iron-sulfur scaffold protein variant IscU(D39A). The automatically generated structural constraints and ensembles of conformers were as good as or better than those determined previously by much less automated means. AVAILABILITY: The program, in the form of binary code along with tutorials and reference manuals, is available at http://ponderosa.nmrfam.wisc.edu/.


Asunto(s)
Resonancia Magnética Nuclear Biomolecular/métodos , Conformación Proteica , Programas Informáticos , Proteínas de Escherichia coli/química , Humanos , Proteínas Hierro-Azufre/química , Ubiquitina/química
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