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1.

Label-free visual proteomics: Coupling MS- and EM-based approaches in structural biology.

Klykov, Oleg; Kopylov, Mykhailo; Carragher, Bridget; Heck, Albert J R; Noble, Alex J; Scheltema, Richard A.

Mol Cell; 82(2): 285-303, 2022 01 20.

Artículo en Inglés | MEDLINE | ID: mdl-35063097

2.

Square beams for optimal tiling in transmission electron microscopy.

Chua, Eugene Y D; Alink, Lambertus M; Kopylov, Mykhailo; Johnston, Jake D; Eisenstein, Fabian; de Marco, Alex.

Nat Methods; 21(4): 562-565, 2024 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-38238558

3.

Broadening access to cryoEM through centralized facilities.

Zimanyi, Christina M; Kopylov, Mykhailo; Potter, Clinton S; Carragher, Bridget; Eng, Edward T.

Trends Biochem Sci; 47(2): 106-116, 2022 02.

Artículo en Inglés | MEDLINE | ID: mdl-34823974

4.

Time-resolved cryo-EM using Spotiton.

Dandey, Venkata P; Budell, William C; Wei, Hui; Bobe, Daija; Maruthi, Kashyap; Kopylov, Mykhailo; Eng, Edward T; Kahn, Peter A; Hinshaw, Jenny E; Kundu, Nidhi; Nimigean, Crina M; Fan, Chen; Sukomon, Nattakan; Darst, Seth A; Saecker, Ruth M; Chen, James; Malone, Brandon; Potter, Clinton S; Carragher, Bridget.

Nat Methods; 17(9): 897-900, 2020 09.

Artículo en Inglés | MEDLINE | ID: mdl-32778833

5.

Mimotope discovery as a tool to design a vaccine against Zika and dengue viruses.

Cuevas-Juárez, Esmeralda; Liñan-Torres, Arturo; Hernández, Carolina; Kopylov, Mykhailo; Potter, Clint S; Carragher, Bridget; Ramírez, Octavio T; Palomares, Laura A.

Biotechnol Bioeng; 120(9): 2658-2671, 2023 09.

Artículo en Inglés | MEDLINE | ID: mdl-37058415

6.

Ribosome Dimerization Protects the Small Subunit.

Feaga, Heather A; Kopylov, Mykhailo; Kim, Jenny Kim; Jovanovic, Marko; Dworkin, Jonathan.

J Bacteriol; 202(10)2020 04 27.

Artículo en Inglés | MEDLINE | ID: mdl-32123037

7.

Reducing cryoEM file storage using lossy image formats.

Eng, Edward T; Kopylov, Mykhailo; Negro, Carl J; Dallaykan, Sarkis; Rice, William J; Jordan, Kelsey D; Kelley, Kotaro; Carragher, Bridget; Potter, Clinton S.

J Struct Biol; 207(1): 49-55, 2019 07 01.

Artículo en Inglés | MEDLINE | ID: mdl-31121317

8.

Bulged and Canonical G-Quadruplex Conformations Determine NDPK Binding Specificity.

Kopylov, Mykhailo; Jackson, Trevia M; Stroupe, M Elizabeth.

Molecules; 24(10)2019 May 23.

Artículo en Inglés | MEDLINE | ID: mdl-31126138

9.

National Center for In-situ Tomographic Ultramicroscopy and the Waffle Method: New and Improved.

Bobe, Daija; Kopylov, Mykhailo.

Microsc Microanal; 29(Supplement_1): 1026, 2023 Jul 22.

Artículo en Inglés | MEDLINE | ID: mdl-37613101

10.

Modern Tools for In-situ Tomography.

Kopylov, Mykhailo; Bobe, Daija; Johnston, Jake D; Paraan, Reza M.

Microsc Microanal; 29(Supplement_1): 954-955, 2023 Jul 22.

Artículo en Inglés | MEDLINE | ID: mdl-37613651

11.

Diversity in Qß Virus-like Particle Cage Assembly via Coat Protein Monomers and AYGG-linked Dimers.

Newton, Thomas; Zhao, Liangjun; Finn, M G; Kopylov, Mykhailo.

Microsc Microanal; 29(Supplement_1): 906-910, 2023 Jul 22.

Artículo en Inglés | MEDLINE | ID: mdl-37613732

12.

Biosynthesis of cell envelope-associated phenolic glycolipids in Mycobacterium marinum.

Vergnolle, Olivia; Chavadi, Sivagami Sundaram; Edupuganti, Uthamaphani R; Mohandas, Poornima; Chan, Catherine; Zeng, Julie; Kopylov, Mykhailo; Angelo, Nicholas G; Warren, J David; Soll, Clifford E; Quadri, Luis E N.

J Bacteriol; 197(6): 1040-50, 2015 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-25561717

13.

The maize (Zea mays L.) nucleoside diphosphate kinase1 (ZmNDPK1) gene encodes a human NM23-H2 homologue that binds and stabilizes G-quadruplex DNA.

Kopylov, Mykhailo; Bass, Hank W; Stroupe, M Elizabeth.

Biochemistry; 54(9): 1743-57, 2015 Mar 10.

Artículo en Inglés | MEDLINE | ID: mdl-25679041

14.

Heterologous Prime-Boost with Immunologically Orthogonal Protein Nanoparticles for Peptide Immunofocusing.

Bhattacharya, Sonia; Jenkins, Matthew C; Keshavarz-Joud, Parisa; Bourque, Alisyn Retos; White, Keiyana; Alvarez Barkane, Amina M; Bryksin, Anton V; Hernandez, Carolina; Kopylov, Mykhailo; Finn, M G.

bioRxiv; 2024 Feb 26.

Artículo en Inglés | MEDLINE | ID: mdl-38464232

15.

Square beams for optimal tiling in TEM.

Chua, Eugene Yd; Alink, Lambertus M; Kopylov, Mykhailo; de Marco, Alex.

Res Sq; 2023 Aug 09.

Artículo en Inglés | MEDLINE | ID: mdl-37609243

16.

Square beams for optimal tiling in TEM.

Chua, Eugene Yd; Alink, Lambertus M; Kopylov, Mykhailo; Johnston, Jake; Eisenstein, Fabian; de Marco, Alex.

bioRxiv; 2023 Oct 09.

Artículo en Inglés | MEDLINE | ID: mdl-37873376

17.

Exploring the Landscape of the PP7 Virus-like Particle for Peptide Display.

Keshavarz-Joud, Parisa; Zhao, Liangjun; Bobe, Daija; Hernandez, Carolina; Kopylov, Mykhailo; Yen, Laura Y; Djeddar, Naima; Thompson, Brianna; Connors, Caleb; Gibson, Greg; Bryksin, Anton; Finn, M G.

ACS Nano; 17(18): 18470-18480, 2023 09 26.

Artículo en Inglés | MEDLINE | ID: mdl-37669408

18.

Recent advances in infectious disease research using cryo-electron tomography.

Asarnow, Daniel; Becker, Vada A; Bobe, Daija; Dubbledam, Charlie; Johnston, Jake D; Kopylov, Mykhailo; Lavoie, Nathalie R; Li, Qiuye; Mattingly, Jacob M; Mendez, Joshua H; Paraan, Mohammadreza; Turner, Jack; Upadhye, Viraj; Walsh, Richard M; Gupta, Meghna; Eng, Edward T.

Front Mol Biosci; 10: 1296941, 2023.

Artículo en Inglés | MEDLINE | ID: mdl-38288336

19.

In situ cryo-FIB/SEM Specimen Preparation Using the Waffle Method.

Klykov, Oleg; Bobe, Daija; Paraan, Mohammadreza; Johnston, Jake D; Potter, Clinton S; Carragher, Bridget; Kopylov, Mykhailo; Noble, Alex J.

Bio Protoc; 12(21)2022 Nov 05.

Artículo en Inglés | MEDLINE | ID: mdl-36618877

20.

Waffle Method: A general and flexible approach for improving throughput in FIB-milling.

Kelley, Kotaro; Raczkowski, Ashleigh M; Klykov, Oleg; Jaroenlak, Pattana; Bobe, Daija; Kopylov, Mykhailo; Eng, Edward T; Bhabha, Gira; Potter, Clinton S; Carragher, Bridget; Noble, Alex J.

Nat Commun; 13(1): 1857, 2022 04 06.

Artículo en Inglés | MEDLINE | ID: mdl-35387991

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Label-free visual proteomics: Coupling MS- and EM-based approaches in structural biology.

Square beams for optimal tiling in transmission electron microscopy.

Broadening access to cryoEM through centralized facilities.

Time-resolved cryo-EM using Spotiton.

Mimotope discovery as a tool to design a vaccine against Zika and dengue viruses.

Ribosome Dimerization Protects the Small Subunit.

Reducing cryoEM file storage using lossy image formats.

Bulged and Canonical G-Quadruplex Conformations Determine NDPK Binding Specificity.

National Center for In-situ Tomographic Ultramicroscopy and the Waffle Method: New and Improved.

Modern Tools for In-situ Tomography.

Diversity in Qß Virus-like Particle Cage Assembly via Coat Protein Monomers and AYGG-linked Dimers.

Biosynthesis of cell envelope-associated phenolic glycolipids in Mycobacterium marinum.

The maize (Zea mays L.) nucleoside diphosphate kinase1 (ZmNDPK1) gene encodes a human NM23-H2 homologue that binds and stabilizes G-quadruplex DNA.

Heterologous Prime-Boost with Immunologically Orthogonal Protein Nanoparticles for Peptide Immunofocusing.

Square beams for optimal tiling in TEM.

Square beams for optimal tiling in TEM.

Exploring the Landscape of the PP7 Virus-like Particle for Peptide Display.

Recent advances in infectious disease research using cryo-electron tomography.

In situ cryo-FIB/SEM Specimen Preparation Using the Waffle Method.

Waffle Method: A general and flexible approach for improving throughput in FIB-milling.