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1.
Mol Biol Rep ; 51(1): 378, 2024 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-38427103

RESUMEN

BACKGROUND: The Ganga River System (GRS) is a biodiversity hotspot, its ecological richness is shaped by a complex geological history. In this study, we examined the genetic diversity, spatial connectivity, and population structure of the Asian Silurid catfish, Wallago attu, across seven tributaries of the GRS. METHODS AND RESULTS: We employed three mitochondrial DNA (mtDNA) regions: cytochrome c oxidase subunit I (COXI), cytochrome b (Cyt b), and control region (CR). Our comprehensive dataset encompassed 2420 bp of mtDNA, derived from 176 W. attu individuals across 19 sampling sites within the seven rivers of GRS. Our findings revealed high gene diversity (Hd:0.99) within W. attu populations. Analysis of Molecular Variance (AMOVA) highlighted that maximum genetic variations were attributed within the populations, and the observed genetic differentiation among the seven populations of W. attu ranged from low to moderate. Network analysis uncovered the presence of three distinct genetic clades, showing no specific association with seven studied rivers. Bayesian skyline plots provided insights into the demographic history of W. attu, suggesting a recent population expansion estimated to have occurred approximately 0.04 million years ago (mya) during the Pleistocene epoch. CONCLUSIONS: These results significantly enhance our understanding of the genetic diversity and spatial connectivity of W. attu, serving as a vital foundation for developing informed conservation strategies and the sustainable management of this economically valuable resource within the Ganga River System.


Asunto(s)
Bagres , Ríos , Humanos , Animales , ADN Mitocondrial/genética , Bagres/genética , Teorema de Bayes , Variación Genética/genética , Filogenia , Genética de Población
2.
Biodegradation ; 35(5): 769-787, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38822999

RESUMEN

The persistence and ubiquity of polycyclic aromatic hydrocarbons (PAHs) in the environment necessitate effective remediation strategies. Hence, this study investigated the potential of purified Laccases, TlFLU1L and TpFLU12L, from two indigenous fungi Trichoderma lixii FLU1 (TlFLU1) and Talaromyces pinophilus FLU12 (TpFLU12), respectively for the oxidation and detoxification of anthracene. Anthracene was degraded with vmax values of 3.51 ± 0.06 mg/L/h and 3.44 ± 0.06 mg/L/h, and Km values of 173.2 ± 0.06 mg/L and 73.3 ± 0.07 mg/L by TlFLU1L and TpFLU12L, respectively. The addition of a mediator compound 2,2-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) to the reaction system significantly increased the degradation of anthracene, with up to a 2.9-fold increase in vmax value and up to threefold decrease in Km values of TlFLU1L and TpFLU12L. The GC-MS analysis of the metabolites suggests that anthracene degradation follows one new pathway unique to the ABTS system-hydroxylation and carboxylation of C-1 and C-2 position of anthracene to form 3-hydroxy-2-naphthoic acid, before undergoing dioxygenation and side chain removal to form chromone which was later converted into benzoic acid and CO2. This pathway contrasts with the common dioxygenation route observed in the free Laccase system, which is observed in the second degradation pathways. Furthermore, toxicity tests using V. parahaemolyticus and HT-22 cells, respectively, demonstrated the non-toxic nature of Laccase-ABTS-mediated metabolites. Intriguingly, analysis of the expression level of Alzheimer's related genes in HT-22 cells exposed to degradation products revealed no induction of neurotoxicity unlike untreated cells. These findings propose a paradigm shift for bioremediation by highlighting the Laccase-ABTS system as a promising green technology due to its efficiency with the discovery of a potentially less harmful degradation pathway, and the production of non-toxic metabolites.


Asunto(s)
Antracenos , Biodegradación Ambiental , Lacasa , Talaromyces , Lacasa/metabolismo , Antracenos/metabolismo , Talaromyces/enzimología , Trichoderma/enzimología , Animales , Proteínas Fúngicas/metabolismo
3.
Biochemistry ; 62(13): 2041-2054, 2023 07 04.
Artículo en Inglés | MEDLINE | ID: mdl-37307069

RESUMEN

The lncRNA human Hox transcript antisense intergenic RNA (hHOTAIR) regulates gene expression by recruiting chromatin modifiers. The prevailing model suggests that hHOTAIR recruits hnRNPB1 to facilitate intermolecular RNA-RNA interactions between the lncRNA HOTAIR and its target gene transcripts. This B1-mediated RNA-RNA interaction modulates the structure of hHOTAIR, attenuates its inhibitory effect on polycomb repression complex 2, and enhances its methyl transferase activity. However, the molecular details by which the nuclear hnRNPB1 protein assembles on the lncRNA HOTAIR have not yet been described. Here, we investigate the molecular interactions between hnRNPB1 and Helix-12 (hHOTAIR). We show that the low-complexity domain segment (LCD) of hnRNPB1 interacts with a strong affinity for Helix-12. Our studies revealed that unbound Helix-12 folds into a specific base-pairing pattern and contains an internal loop that, as determined by thermal melting and NMR studies, exhibits hydrogen bonding between strands and forms the recognition site for the LCD segment. In addition, mutation studies show that the secondary structure of Helix-12 makes an important contribution by acting as a landing pad for hnRNPB1. The secondary structure of Helix-12 is involved in specific interactions with different domains of hnRNPB1. Finally, we show that the LCD unwinds Helix-12 locally, indicating its importance in the hHOTAIR restructuring mechanism.


Asunto(s)
ARN Largo no Codificante , Humanos , Complejo Represivo Polycomb 2 , ARN Largo no Codificante/genética , ARN Largo no Codificante/metabolismo
4.
Small ; 19(12): e2206248, 2023 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-36642819

RESUMEN

P2-type Na2/3 Ni1/3 Mn1/2 Ti1/6 O2 (NMTNO) cathode is a preeminent electrode material for Na-ion batteries owing to its open prismatic framework, air-moisture stability, inexpensiveness, appealing capacity, environmental benignity, and Co-free composition. However, the poor cycling stability, sluggish Na-ion kinetics induced in bulk-sized cathode particles, cracking, and exfoliation in the crystallites remain a setback. To outmaneuver these, a designing strategy of a mechanically robust, hexagonal nano-crystallites of P2-type Na2/3 Ni1/3 Mn1/2 Ti1/6 O2 (NMTNOnano ) electrode via quick, energy-efficient, and low-cost microwave-irradiated synthesis is proposed. For the first time, employing a unified experimental and theoretical approach with fracture mechanics analysis, the mechanism behind the enhanced performance, better structural stability, and lower diffusion-induced stress of NMTNOnano compared to micro-sized Na2/3 Ni1/3 Mn1/2 Ti1/6 O2 is unveiled and the electrochemical shock map is predicted. The NMTNOnano cathode provides 94.8% capacity retention after 100 cycles at 0.1 C with prolonged performance for 1000 cycles at 0.5 C. The practical viability of this cathode, tested in a full cell against a hard carbon anode delivered 85.48% capacity retention at 0.14 mA cm-2 after 200 cycles. This work bridges the gap in correlating the microstructural and electrochemical properties through experimental, theoretical (DFT), and fracture mechanics analysis, thereby tailoring efficient cathode with lower diffusion-induced stress for high-energy Na-ion batteries.

5.
Cladistics ; 39(5): 382-397, 2023 10.
Artículo en Inglés | MEDLINE | ID: mdl-37200006

RESUMEN

The Himalayan foothills and associated environment are well-known for driving the rapid diversification of many species and the formation of biodiversity hotspots. The effects of environmental change since the Miocene have accelerated species diversification, and hence are useful for studying population genetic structure, and evolutionary relationships via genetic approaches. To date, the effects of climatic fluctuations on the biogeography of large-bodied lizards have not been assessed comprehensively. Herein, we examine the diversification of Varanus bengalensis, focusing on its genetic structure to provide insights into how landscape structure and climatic fluctuations have shaped species differentiation. We confirm the existence of two distinct lineages within V. bengalensis distributed across the Himalayan foothills and the remainder of mainland India. Divergence analyses revealed the split between the Himalayan foothills and the remainder of the mainland lineages of V. bengalensis in the mid-Pliocene ~3.06 Ma, potentially as a consequence of the Siwalik broadening and climatic fluctuations across the Himalayan foothills. The results suggest recognition of a new lineage of V. bengalensis from the Himalayan foothills as a distinctive evolutionarily significant unit.


Asunto(s)
Lagartos , Animales , Lagartos/genética , Filogenia , Biodiversidad , Evolución Biológica , India
6.
Biotechnol Appl Biochem ; 70(6): 2025-2037, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-37606005

RESUMEN

Tuberculosis is a fatal disease caused by Mycobacterium tuberculosis. M. tuberculosis becoming drug-resistant day by day, necessitating to know the mechanism behind the drug resistance and how to overcome this deadly malady. Drug resistance and reduced drug bioavailability are caused by a class of transporter proteins called the ATP-binding cassette (ABC) transporters, which pump a range of medicines out of cells at the price of ATP hydrolysis. By using computational approaches, we tried to elaborate the probable function of the Rv2326c gene of M. tuberculosis, perhaps involved in drug resistance mechanism. The presence of the signature motif of ABC transporters (LSGGELQRLALAAAL and LSGGQMRRVVLAGLL) and ATP binding motif (GXXXXGKT and GXXXXGKS) in the protein sequence signifying its importance in the ATP binding and transportation of molecules. Further, this manuscript elaborated about tertiary structure and validation, functional category, localization, phosphorylation site prediction, mutational analysis of conserved motifs. Ligand docking study shows the highest affinity with ATP than GTP justified its function as an ATP binding protein. The Rv2326c protein is present in the inner membrane and working as an ATP binding protein and might be playing a dynamic role in transportation. In this study, we found that Rv2326c protein might be working as an ABC transporter by which the drugs and other molecules are imported or exported into the bacterium. As a result, the current study provides a means to better understand its normal functioning and basic biology, which can help in the development of novel therapeutic targeting approaches for Rv2326c protein.


Asunto(s)
Mycobacterium tuberculosis , Tuberculosis , Humanos , Transportadoras de Casetes de Unión a ATP/genética , Transportadoras de Casetes de Unión a ATP/química , Transportadoras de Casetes de Unión a ATP/metabolismo , Mycobacterium tuberculosis/genética , Mycobacterium tuberculosis/metabolismo , Secuencia de Aminoácidos , Adenosina Trifosfato/metabolismo
7.
Sensors (Basel) ; 23(23)2023 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-38067775

RESUMEN

The amalgamation of the Internet of Things (IoT) and federated learning (FL) is leading the next generation of data usage due to the possibility of deep learning with data privacy preservation. The FL architecture currently assumes labeled data samples from a client for supervised classification, which is unrealistic. Most research works in the literature focus on local training, update receiving, and global model updates. However, by principle, the labeling must be performed on the client side because the data samples cannot leave the source under the FL principle. In the literature, a few works have proposed methods for unlabeled data for FL using "class-prior probabilities" or "pseudo-labeling". However, these methods make either unrealistic or uncommon assumptions, such as knowing class-prior probabilities are impractical or unavailable for each classification task and even more challenging in the IoT ecosystem. Considering these limitations, we explored the possibility of performing federated learning with unlabeled data by providing a clustering-based method of labeling the sample before training or federation. The proposed work will be suitable for every type of classification task. We performed different experiments on the client by varying the labeled data ratio, the number of clusters, and the client participation ratio. We achieved accuracy rates of 87% and 90% by using 0.01 and 0.03 of the truth labels, respectively.

8.
Environ Monit Assess ; 195(8): 976, 2023 Jul 21.
Artículo en Inglés | MEDLINE | ID: mdl-37477719

RESUMEN

Studying the spatiotemporal variability of pollutants is necessary to identify the pollution hotspots with high health risk and enable the agencies to implement pollution abatement strategies in a targeted manner. Present study reports the spatio-temporal variability and health risk assessment (HRA) of PM2.5 (Particulate matter with aerodynamic diameter <2.5µm) and NO2 over IGP from 2019-2021. The HRA is expressed as passively smoked cigarettes (PSC) for four different health outcomes i.e., low birth weight (LBW), percentage decreased lung function (DLF) in school aged children, lung cancer (LC), and cardiovascular mortality (CM). The findings confirm very high PM2.5 and NO2 mass concentrations and high health risk over middle IGP and Delhi as compared to upper and lower IGP. Within Delhi, north Delhi region is the most polluted and at highest risk as compared to central and south Delhi. The health risk associated with PM2.5 over IGP is highest for DLF, equivalent to 21.63 PSCs daily, followed by CM (11.69), LBW (8.27) and LC (6.94). For NO2, the health risk is highest for DLF (3.09 PSCs) and CM (2.95), followed by LC (1.47) and LBW (1.04). PM2.5 and NO2 concentrations, along with the associated health risks, are highest during the post-monsoon and winter seasons and lowest during the monsoon season.


Asunto(s)
Contaminantes Atmosféricos , Contaminación del Aire , Niño , Humanos , Contaminantes Atmosféricos/análisis , Dióxido de Nitrógeno , Monitoreo del Ambiente , Material Particulado/análisis , Estaciones del Año , Medición de Riesgo , Contaminación del Aire/análisis
9.
Environ Res ; 206: 112604, 2022 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-34968436

RESUMEN

Magnetic acid activated carbons (MAAC) were prepared from the shells of Sterculia villosa Roxb by activating the biomass and magnetizing it using the co-precipitation technique. Characterization of MAAC prior and post adsorption was performed using various microscopic and spectroscopic analytical techniques, and they verified the formation of magnetic aggregates over porous activated carbon surface. Vibrating Sample Magnetometer (VSM) analysis confirmed the superparamagnetic behaviour of the adsorbent with saturation magnetization (Ms) value of 18.2 emu/g, causing an easy and rapid recovery from the adsorption setup in the presence of an external magnetic field. Langmuir isotherm and pseudo-second-order kinetic model best fit the experimental data with theoretical Langmuir maximum adsorption capacity as 81.97 mg/g and verifying chemisorption type of adsorption process, respectively. Thermodynamic analysis verified the interaction among adsorbate and adsorbent as endothermic, spontaneous, and thermodynamically favourable. Co-existing metal cations showed a significant reduction in ciprofloxacin removal efficiency; co-existing anions, though, showed a negligible influence on the adsorption efficiency of MAAC. Recyclability studies verified that the adsorption efficiency fell from 98% in the first cycle to 43% in the fifth cycle. The Ms value fell to 7.6 emu/g (after five adsorption cycles), affecting the adsorbent's recovery. The Phyto-toxicological assessment was performed to evaluate the environmental risk to human and aquatic life using Vigna mungo seeds. MAAC proved to be an effective and magnetically separable adsorbent for removing antibiotics.


Asunto(s)
Carbón Orgánico , Contaminantes Químicos del Agua , Adsorción , Ciprofloxacina , Humanos , Concentración de Iones de Hidrógeno , Cinética , Fenómenos Magnéticos , Termodinámica , Contaminantes Químicos del Agua/análisis
10.
J Hered ; 113(4): 444-452, 2022 07 23.
Artículo en Inglés | MEDLINE | ID: mdl-35373825

RESUMEN

The hog deer (Axis porcinus) is an endangered cervid with drastic population declines. There are 2 recognized subspecies of hog deer: A. p. porcinus, ranging from Punjab Province in Pakistan, Nepal, and the Northern part of India to Myanmar, and A. p. annamiticus found in Indo-China, Thailand, Laos, Cambodia, and Vietnam. The current geographic range of A. p. annamiticus is still ambiguous. We analyzed variation in the mitochondrial DNA control region (mtDNA CR) to investigate the intra-species structure, differentiation, and demographic history of hog deer from Cambodia (Kratie Province), which we compared with the populations from India and Thailand. We also generated divergence time estimates using a concatenated dataset of complete Cyt b and partial CR. The CR data showed that Cambodian hog deer are genetically differentiated from the mainland Indian and Thai populations, forming a distinct basal clade. The time of divergence indicates that the Cambodian lineage split from the other 2 hog deer lineages around 0.51 Mya, during the Late Pleistocene. The results also suggest strong phylogeographic structure among hog deer: lineage A extends from Terai Arc (foothills of the Himalayas) to Assam, India (A. p. porcinus), lineage B from Manipur, India to Thailand (A. p. annamiticus), and lineage C is only known from Kratie Province, Cambodia. Lineage A exhibited a higher level of genetic diversity than lineages B and C, with recent demographic stability. Thus, the hog deer population in Kratie Province appears to be a distinct lineage that should be treated as an evolutionarily significant unit.


Asunto(s)
Ciervos , Animales , Cambodia , ADN Mitocondrial/genética , Ciervos/genética , Variación Genética , India , Filogenia , Tailandia
11.
J Obstet Gynaecol ; 42(7): 2698-2703, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-35866241

RESUMEN

Hypertensive disorders in pregnancy (HDPs) are the leading cause of maternal and perinatal deaths worldwide. Despite the widely reported multisystemic pathophysiology of pre-eclampsia and other HDPs, it is unknown whether these disorders represent a continuum or separate entities making clinical diagnosis a challenge. This study aimed to investigate angiogenic, metabolic and immunoregulatory specific profiles of hypertensive and gestationally matched normotensive pregnancies. A total of 200 pregnancies from a regional hospital in South Africa, via convenience sampling, were quantitatively analysed for circulating sFlt-1; PlGF; VEGF; sENG; PAPP-A; PP13; ADAMTS 12; TGF-ß1 in maternal serum samples using ELISA technique. Serum protein markers TGF-ß1, sENG and PAPP-A were significantly increased (p < .05) in early-onset pre-eclampsia vs. NG1 groups. sFlt-1 was significantly higher in late-onset pre-eclampsia vs NG2 groups. The GH group showed a significant increase in TGF-ß1 and PAPP-A vs. NG1 counterpart. ADAMTS12 and sENG were significantly lower in gestational hypertension vs. early-onset pre-eclampsia. No significant differences were seen in PlGF, VEGF and PP13 levels across the groups. These changes show the HDP spectrum has distinct characteristics on the angiogenic profile. Based on these results, further validation of diagnostic and prognostic biomarkers of pre-eclampsia and gestational hypertension is warranted.Impact statementWhat is already known on this subject? Hypertensive pregnancy disorders are a public health problem with adverse effects on both mother and neonate. The elusive pathogenesis of this syndrome combined with the late prevalence of symptoms leaves clinicians with a myriad of theories and indefinite treatments. The investigation into conventional anti-/angiogenic factors has been extensively studied in pre-eclampsia patients only. The overlapping clinical presentation of pre-eclampsia and gestational hypertension further complicates the diagnosis of disorders.What do the results of this study add? The investigation of novel angiogenic, metabolic and inflammatory markers will firstly contribute to generating a database for researchers both nationally and internationally. This combinatory triad of markers will assist in elucidating and differentiating between early- and late-onset preeclampsia versus gestational hypertension. The results of our cohort study suggest possible early diagnostic markers for pre-eclampsia and gestational hypertension.What are the implications of these findings for clinical practice and/or further research? Research in this area will contribute to an improvement in early disease management which will ultimately lead to a reduction in health care costs and mortality rate locally and globally. It will also enforce diagnostic and prognostic markers for hypertensive pregnancy diseases and warrant further investigation into the proteins primarily involved in the trophoblastic invasion. This will then clarify whether these two closely related hypertensive disorders represent a continuum or two separate entities.


Asunto(s)
Hipertensión Inducida en el Embarazo , Preeclampsia , Embarazo , Recién Nacido , Femenino , Humanos , Hipertensión Inducida en el Embarazo/epidemiología , Factor de Crecimiento Transformador beta1 , Factor A de Crecimiento Endotelial Vascular , Proteína Plasmática A Asociada al Embarazo , Estudios de Cohortes , Inductores de la Angiogénesis , Biomarcadores , Receptor 1 de Factores de Crecimiento Endotelial Vascular
12.
Comput Electr Eng ; 102: 108276, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35958351

RESUMEN

The sudden outbreak of the novel coronavirus disease in 2019, known as COVID-19 has impacted the entire globe and has forced governments of various countries to a partial or full lockdown in the fear of the rapid spread of this disease. The major lesson learned from this pandemic is that there is a need to implement a robust system by using non-pharmaceutical interventions for the prevention and control of new contagious viruses. This goal can be achieved using the platform of the Internet of Things (IoT) because of its seamless connectivity and ubiquitous sensing ability. This technology-enabled healthcare sector is helpful to monitor COVID-19 patients properly by adopting an interconnected network. IoT is useful for improving patient satisfaction by reducing the rate of readmission in the hospital. The presented work discusses the applications and technologies of IoT like smart and wearable devices, drones, and robots which are used in healthcare systems to tackle the Coronavirus pandemic This paper focuses on applications of cognitive radio-based IoT for medical applications, which is referred to as "Cognitive Internet of Medical Things" (CIoMT). CIoMT is a disruptive and promising technology for dynamic monitoring, tracking, rapid diagnosis, and control of pandemics and to stop the spread of the virus. This paper explores the role of the CIoMT in the health domain, especially during pandemics, and also discusses the associated challenges and research directions.

13.
Funct Integr Genomics ; 21(2): 171-193, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-33547987

RESUMEN

A pentachlorophenol degrading bacterium was isolated from effluent of a wastewater treatment plant in Durban, South Africa, and identified as Bacillus tropicus strain AOA-CPS1 (BtAOA). The isolate degraded 29% of pentachlorophenol (PCP) within 9 days at an initial PCP concentration of 100 mg L-1 and 62% of PCP when the initial concentration was set at 350 mg L-1. The whole-genome of BtAOA was sequenced using Pacific Biosciences RS II sequencer with the Single Molecule, Real-Time (SMRT) Link (version 7.0.1.66975) and analysed using the HGAP4-de-novo assembly application. The contigs were annotated at NCBI, RASTtk and PROKKA prokaryotic genome annotation pipelines. The BtAOA genome is comprised of a 5,246,860-bp chromosome and a 58,449-bp plasmid with a GC content of 35.4%. The metabolic reconstruction for BtAOA showed that the organism has been naturally exposed to various chlorophenolic compounds including PCP and other xenobiotics. The chromosome encodes genes for core processes, stress response and PCP catabolic genes. Analogues of PCP catabolic gene (cpsBDCAE, and p450) sequences were identified from the NCBI annotation data, PCR-amplified from the whole genome of BtAOA, cloned into pET15b expression vector, overexpressed in E. coli BL21 (DE3) expression host, purified and characterized. Sequence mining and comparative analysis of the metabolic reconstruction of the BtAOA genome with closely related strains suggests that the operon encoding the first two enzymes in the PCP degradation pathway were acquired from a pre-existing pterin-carbinolamine dehydratase subsystem. The other two enzymes were recruited via horizontal gene transfer (HGT) from the pool of hypothetical proteins with no previous specific function, while the last enzyme was recruited from pre-existing enzymes from the TCA or serine-glyoxalase cycle via HGT events. This study provides a comprehensive understanding of the role of BtAOA in PCP degradation and its potential exploitation for bioremediation of other xenobiotic compounds.


Asunto(s)
Bacillus/genética , Biodegradación Ambiental , Genoma Bacteriano/genética , Secuenciación Completa del Genoma , Anotación de Secuencia Molecular , Pentaclorofenol/metabolismo , Sudáfrica , Xenobióticos/metabolismo
14.
Mol Biol Rep ; 48(1): 315-322, 2021 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-33296067

RESUMEN

The Ganges river dolphin, Platanista gangetica gangetica is one of the endangered cetaceans. Due to increasing anthropogenic activities, it has faced a significant reduction in distribution range since the late 1800s and has even gone extinct from most of the early localities. The investigation of complete mitogenome holds significant relevance for identifying evolutionary relationships and monitoring the endangered species. Herein, we report and characterize for the first time the 16,319 bp complete mitochondrial genome of P. g. gangetica. It comprises 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA genes, and one control region (CR). The genome composition was A + T biased (59.6%) and exhibited a positive AT-skew (0.104) and negative GC-skew (- 0.384). All the genes were encoded on the heavy strand, except eight tRNAs and the ND6 gene. In the CR, an 18 bp tandem repeat sequence was observed. Our Bayesian Inference (BI) and Maximum Likelihood (ML) based phylogenetic analysis indicated that studied river dolphins were polyphyletic and the placement of Platanista was to be more basal than other river dolphins (Lipotes, Inia and Pontoporia). The pairwise genetic distance of Platanista with other cetaceans was varied, with an overall close affinity with whales. The model-based BI and ML phylogenetic analysis indicated that Platanista clustering with Ziphiidae with high to moderate supportive values (PP/BP = 98/68). The results of this study provide insights important for the conservation genetics and further evolutionary studies of the freshwater river dolphins.


Asunto(s)
Cetáceos/genética , Delfines/genética , Especies en Peligro de Extinción , Genoma Mitocondrial/genética , Animales , Delfines/clasificación , Filogenia
15.
Molecules ; 26(16)2021 Aug 08.
Artículo en Inglés | MEDLINE | ID: mdl-34443388

RESUMEN

The purpose of this study was to examine the free radical scavenging and antioxidant activities of ellagic acid (EA) and ellagic acid peracetate (EAPA) by measuring their reactions with the radicals, 2,2-diphenyl-1-picrylhydrazyl and galvinoxyl using EPR spectroscopy. We have also evaluated the influence of EA and EAPA on the ROS production in L-6 myoblasts and rat liver microsomal lipid peroxidation catalyzed by NADPH. The results obtained clearly indicated that EA has tremendous ability to scavenge free radicals, even at concentration of 1 µM. Interestingly even in the absence of esterase, EAPA, the acetylated product of EA, was also found to be a good scavenger but at a relatively slower rate. Kinetic studies revealed that both EA and EAPA have ability to scavenge free radicals at the concentrations of 1 µM over extended periods of time. In cellular systems, EA and EAPA were found to have similar potentials for the inhibition of ROS production in L-6 myoblasts and NADPH-dependent catalyzed microsomal lipid peroxidation.


Asunto(s)
Espectroscopía de Resonancia por Spin del Electrón , Ácido Elágico/análogos & derivados , Ácido Elágico/farmacología , Depuradores de Radicales Libres/farmacología , Ácido Peracético/análogos & derivados , Animales , Cinética , Microsomas Hepáticos/efectos de los fármacos , Microsomas Hepáticos/metabolismo , Ácido Peracético/farmacología , Ratas
16.
Indian J Crit Care Med ; 25(12): 1364-1369, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-35027795

RESUMEN

BACKGROUND: Insulin resistance is an integral component of a multi-organ dysfunction syndrome (MODS) associated with increased mortality. We determined a cutoff value for the homeostatic model assessment of insulin resistance (HOMA-IR) during an ICU admission that could predict 28-day mortality of nondiabetic MODS patients. MATERIALS AND METHODS: In this prospective, outcome assessor blinded cohort design, we evaluated 82 such patients for fasting blood glucose (FBG)/insulin levels (FIL) during an ICU admission and followed their outcome for 28 days. The primary outcome variable was the HOMA-IR score calculated from the above variables. The statistical tool included receiver operating characteristic curve, Youden index, and correlation and regression analysis. RESULTS: Overall, 38 patients succumbed to their illness. The optimal cutoff value for HOMA-IR was ≥1.61 (area under curve: 0.684, sensitivity: 36.8%, specificity: 95.5%). The 28-day survival was significantly lower (p = 0.001) at HOMA-IR threshold ≥1.61 (odds ratio: 12.25, hazard ratio: 2.98). The mean HOMA-IR among survivors vs nonsurvivors was 0.76 ± 0.61 and 1.38 ± 1.14, respectively (p = 0.004). Except for FIL and FBG, HOMA-IR values did not correlate with any other baseline or outcome parameters (demographics, APACHE II/sequential organ failure assessment score, vasopressor needs, or ICU/hospital stay). On comparing these parameters across the HOMA-IR threshold, only FIL and the hospital stay varied significantly. Most of the outcome parameters, however, varied significantly among nonsurvivors vs survivors. CONCLUSION: The HOMA-IR is a significant predictor of mortality in MODS. Its cutoff value may assist in determining a reference range for critically ill patients. Its routine use in the light of other disease severity scores may serve in their better prognostication. HOW TO CITE THIS ARTICLE: Sama S, Jain G, Kant R, Bhadoria AS, Naithani M, Kumar A. Quantifying the Homeostatic Model Assessment of Insulin Resistance to Predict Mortality in Multi-organ Dysfunction Syndrome. Indian J Crit Care Med 2021;25(12):1364-1369.

17.
Mol Biol Rep ; 47(12): 9757-9763, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-33219479

RESUMEN

Kashmir musk deer, Moschus cupreus (KMD) is one the most threatened species endemic to the Himalayan region of Kashmir, Pakistan and Afghanistan. Herein, we have sequenced, annotated and characterized the complete mitogenome of M. cupreus. The investigation and comparison of the mitogenome provide crucial information for phylogenetic analysis to understand the evolutionary relationships. The mitogenome of KMD was 16,354 bp long, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs) and non-coding control region. Its composition was highly A+T biased 68.42%, and exhibited a positive AT-skew (0.082) and negative GC-skew (- 0.307). The phylogenetic analysis suggested that KMD was a primitive and extant species in the genus Moschus, whereas Alpine musk deer (M. chrysogaster) and Himalayan musk deer (M. leucogaster) were the closest relatives. It indicated the placement of M. cupreus within the monotypic family Moschidae of musk deer. Hence, it provides a better understanding of lineage identification and musk deer evolution for further research.


Asunto(s)
ADN Mitocondrial , Ciervos , Genoma Mitocondrial , Filogenia , Afganistán , Animales , Ciervos/clasificación , Ciervos/genética , Especies en Peligro de Extinción , Pakistán
18.
Cochrane Database Syst Rev ; 7: CD009533, 2020 07 03.
Artículo en Inglés | MEDLINE | ID: mdl-32633858

RESUMEN

BACKGROUND: Psychosis is an illness characterised by alterations in thoughts and perceptions resulting in delusions and hallucinations. Psychosis is rare in adolescents but can have serious consequences. Antipsychotic medications are the mainstay treatment, and have been shown to be effective. However, there is emerging evidence on psychological interventions such as cognitive remediation therapy, psycho-education, family therapy and group psychotherapy that may be useful for adolescents with psychosis. OBJECTIVES: To assess the effects of various psychological interventions for adolescents with psychosis. SEARCH METHODS: We searched the Cochrane Schizophrenia Group's study-based Register of Trials including clinical trials registries (latest, 8 March 2019). SELECTION CRITERIA: All randomised controlled trials comparing various psychological interventions with treatment-as-usual or other psychological treatments for adolescents with psychosis. For analyses, we included trials meeting our inclusion criteria and reporting useable data. DATA COLLECTION AND ANALYSIS: We independently and reliably screened studies and we assessed risk of bias of the included studies. For dichotomous data, we calculated risk ratios (RRs) and 95% confidence intervals (CIs) on an intention-to-treat basis. For continuous data, we used mean differences (MDs) and the 95% CIs. We used a random-effects model for analyses. We created a 'Summary of findings' table using GRADE. MAIN RESULTS: The current review includes 7 studies (n = 319) assessing a heterogenous group of psychological interventions with variable risk of bias. Adverse events were not reported by any of the studies. None of the studies was sponsored by industry. Below, we summarise the main results from four of six comparisons, and the certainty of these results (based on GRADE). All scale scores are average endpoint scores. Cognitive Remediation Therapy (CRT) + Treatment-as-Usual (TAU) versus TAU Two studies compared adding CRT to participants' TAU with TAU alone. Global state (CGAS, high = good) was reported by one study. There was no clear difference between treatment groups (MD -4.90, 95% CI -11.05 to 1.25; participants = 50; studies = 1, very low-certainty). Mental state (PANSS, high = poor) was reported by one study. Scores were clearly lower in the TAU group (MD 8.30, 95% CI 0.46 to 16.14; participants = 50; studies = 1; very low-certainty). Clearly more participants in the CRT group showed improvement in cognitive functioning (Memory digit span test) compared to numbers showing improvement in the TAU group (1 study, n = 31, RR 0.58, 95% CI 0.37 to 0.89; very low-certainty). For global functioning (VABS, high = good), our analysis of reported scores showed no clear difference between treatment groups (MD 5.90, 95% CI -3.03 to 14.83; participants = 50; studies = 1; very low-certainty). The number of participants leaving the study early from each group was similar (RR 0.93, 95% CI 0.32 to 2.71; participants = 91; studies = 2; low-certainty). Group Psychosocial Therapy (GPT) + TAU versus TAU One study assessed the effects of adding GPT to participants' usual medication. Global state scores (CGAS, high = good) were clearly higher in the GPT group (MD 5.10, 95% CI 1.35 to 8.85; participants = 56; studies = 1; very low-certainty) but there was little or no clear difference between groups for mental state scores (PANSS, high = poor, MD -4.10, 95% CI -8.28 to 0.08; participants = 56; studies = 1, very low-certainty) and no clear difference between groups for numbers of participants leaving the study early (RR 0.43, 95% CI 0.15 to 1.28; participants = 56; studies = 1; very low-certainty). Cognitive Remediation Programme (CRP) + Psychoeducational Treatment Programme (PTP) versus PTP One study assessed the effects of combining two types psychological interventions (CRP + PTP) with PTP alone. Global state scores (GAS, high = good) were not clearly different (MD 1.60, 95% CI -6.48 to 9.68; participants = 25; studies = 1; very low-certainty), as were mental state scores (BPRS total, high = poor, MD -5.40, 95% CI -16.42 to 5.62; participants = 24; studies = 1; very low-certainty), and cognitive functioning scores (SPAN-12, high = good, MD 2.40, 95% CI -2.67 to 7.47; participants = 25; studies = 1; very low-certainty). Psychoeducational (PE) + Multifamily Treatment (MFT) Versus Nonstructured Group Therapy (NSGT, all long-term) One study compared (PE + MFT) with NSGT. Analysis of reported global state scores (CGAS, high = good, MD 3.38, 95% CI -4.87 to 11.63; participants = 49; studies = 1; very low-certainty) and mental state scores (PANSS total, high = poor, MD -8.23, 95% CI -17.51 to 1.05; participants = 49; studies = 1; very low-certainty) showed no clear differences. The number of participants needing hospital admission (RR 0.84, 95% CI 0.36 to 1.96; participants = 49; studies = 1) and the number of participants leaving the study early from each group were also similar (RR 0.52, 95% CI 0.10 to 2.60; participants = 55; studies = 1; low-certainty). AUTHORS' CONCLUSIONS: Most of our estimates of effect for our main outcomes are equivocal. An effect is suggested for only four outcomes in the SOF tables presented. Compared to TAU, CRT may have a positive effect on cognitive functioning, however the same study reports data suggesting TAU may have positive effect on mental state. Another study comparing GPT with TAU reports data suggesting GPT may have a positive effect on global state. However, the estimate of effects for all the main outcomes in our review should be viewed with considerable caution as they are based on data from a small number of studies with variable risk of bias. Further data could change these results and larger and better quality studies are needed before any firm conclusions regarding the effects of psychological interventions for adolescents with psychosis can be made.


Asunto(s)
Remediación Cognitiva , Terapia Familiar , Psicoterapia de Grupo , Trastornos Psicóticos/terapia , Esquizofrenia/terapia , Adolescente , Sesgo , Cognición/fisiología , Terapia Combinada/métodos , Humanos , Memoria a Corto Plazo , Pacientes Desistentes del Tratamiento/estadística & datos numéricos , Terapia Asistida por Computador , Resultado del Tratamiento , Juegos de Video
19.
Int J Legal Med ; 133(1): 65-69, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29460109

RESUMEN

We examined an online sold product "Hatha Jodi" synonym of "paired arm" for the confirmation of its biological source. It was declared as a plant root. The morphological features of these samples were matched with the "intromittent organs" or "hemi penis" of the monitor lizard. For further confirmation, we used sequencing of a partial fragment of mitochondrial DNA cytochrome b gene. Sequence comparison indicated that these claimed plant products were actually biological samples of a common monitor lizard, Varanus bengalensis. Hence, it exhibited the ongoing illegal trade of the intromittent organ of a prohibited species with a misleading name using low risk and widely adopted modern trading method that imposes a severe challenge for combating against the wildlife crime.


Asunto(s)
Conservación de los Recursos Naturales , Crimen , Citocromos b/genética , ADN Mitocondrial , Lagartos/genética , Animales , Comercio , India , Análisis de Secuencia de ADN
20.
Mol Biol Rep ; 46(1): 1327-1333, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30456740

RESUMEN

We report complete mitochondrial genome of Northern Indian red muntjac, Muntiacus vaginalis, and its phylogenetic inferences. Mitogenome composition was 16,352 bp in length and its overall base composition in the circular genome was A = 33.2%, T = 29.0%, C = 24.50% and G = 13.30%. It exhibited a typical mitogenome structure, including 22 transfer RNA genes, 13 protein-coding genes, two ribosomal RNA genes and a major non-coding control region (D-loop region). All the genes except ND6 and eight tRNA's were encoded on the heavy strand. Phylogenetic analyses showed that M. vaginalis is closely related to M. muntjak and formed a sister relationship with Elaphodus cephalophus. In view of the unclear distribution range and escalating habitat loss, it is important to identify its population genetic status. The complete mitogenome described in this study can be used in further phylogenetics, identification of extant maternal lineage, evolutionary significance unit and its genetic conservation.


Asunto(s)
Genoma Mitocondrial , Ciervo Muntjac/genética , Filogenia , Animales , Teorema de Bayes , India , Cadenas de Markov , Método de Montecarlo , Nucleótidos/genética , Sistemas de Lectura Abierta/genética , ARN Ribosómico/genética , ARN de Transferencia/genética
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