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1.
Ann Oncol ; 34(2): 163-172, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36400384

RESUMEN

BACKGROUND: Neoadjuvant therapy is recommended for locally advanced esophageal cancer, but the optimal strategy remains unclear. We aimed to evaluate the safety and efficacy of neoadjuvant chemoradiotherapy (nCRT) versus neoadjuvant chemotherapy (nCT) followed by minimally invasive esophagectomy (MIE) for locally advanced esophageal squamous cell carcinoma (ESCC). PATIENTS AND METHODS: Eligible patients staged as cT3-4aN0-1M0 ESCC were randomly assigned (1 : 1) to the nCRT or nCT group stratified by age, cN stage, and centers. The chemotherapy, based on paclitaxel and cisplatin, was administered to both groups, while concurrent radiotherapy was added for the nCRT group; then MIE was carried out. The primary endpoint was 3-year overall survival. This study is registered with ClinicalTrials.gov (NCT03001596). RESULTS: A total of 264 patients were eligible for the intention-to-treat analysis. By 30 November 2021, 121 deaths had occurred. The median follow-up was 43.9 months (interquartile range 36.6-49.3 months). The overall survival in the intention-to-treat population was comparable between the nCRT and nCT strategies [hazard ratio (HR) 0.82, 95% confidence interval (CI) 0.58-1.18; P = 0.28], with a 3-year survival rate of 64.1% (95% CI 56.4% to 72.9%) versus 54.9% (95% CI 47.0% to 64.2%), respectively. There were also no differences in progression-free survival (HR 0.83, 95% CI 0.59-1.16; P = 0.27) and recurrence-free survival (HR 1.07, 95% CI 0.71-1.60; P = 0.75), although the pathological complete response in the nCRT group (31/112, 27.7%) was significantly higher than that in the nCT group (3/104, 2.9%; P < 0.001). Besides, a trend of lower risk of recurrence was observed in the nCRT group (P = 0.063), while the recurrence pattern was similar (P = 0.802). CONCLUSIONS: NCRT followed by MIE was not associated with significantly better overall survival than nCT among patients with cT3-4aN0-1M0 ESCC. The results underscore the pending issue of the best strategy of neoadjuvant therapy for locally advanced bulky ESCC.


Asunto(s)
Neoplasias Esofágicas , Carcinoma de Células Escamosas de Esófago , Humanos , Carcinoma de Células Escamosas de Esófago/terapia , Terapia Neoadyuvante/métodos , Neoplasias Esofágicas/tratamiento farmacológico , Esofagectomía , Estudios Prospectivos , Quimioradioterapia/métodos , Estudios Retrospectivos
2.
Neoplasma ; 67(2): 394-401, 2020 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-31847525

RESUMEN

The aim of this study was to investigate the prognostic value of the prognostic nutritional index (PNI) on the long-term survival of non-small cell lung cancer (NSCLC) patients who received platinum-based chemotherapy. Data on nutritional parameters and clinicopathological characteristics [e.g., albumin, total protein, body mass index (BMI), eastern cooperative oncology group (ECOG) performance status, stage, pathology, treatment strategy] were analyzed and retrospectively correlated with overall survival (OS). The PNI was calculated based on the concentration of albumin and lymphocyte count [10 × albumin, (g/dl) + 0.005 × lymphocyte (count/mm3)]. A receiver operating characteristic curve (ROC) analysis was used to find the optimal cut-off value of PNI. Univariate and multivariate analyses were used to evaluate the prognostic value of PNI. A total of 186 patients met the inclusion criteria. The optimal cut-off value for PNI was 50.45. Compared with the parameters of the low PNI group (n=76), high PNI was significantly associated with adenocarcinoma type, stage III, better ECOG and comprehensive treatment modality. The univariate analysis demonstrated that OS was superior when PNI ≥50.45, albumin ≥35 g/l, platelet-lymphocyte ratio (PLR) ≥163 and ECOG <2, and when the patient received a comprehensive treatment modality. In the multivariate analysis, PNI, TNM stage and treatment strategy were identified as independent predictors of survival in this study. This retrospective study demonstrated that a low PNI was related to worse overall survival in patients with stage III/IV NSCLC who received platinum-based chemotherapy. These data provided a conceptual basis for further research on the clinical application of the PNI index for patients receiving chemotherapy for intermediate- and advanced-stage NSCLC.


Asunto(s)
Carcinoma de Pulmón de Células no Pequeñas/diagnóstico , Neoplasias Pulmonares/diagnóstico , Evaluación Nutricional , Carcinoma de Pulmón de Células no Pequeñas/tratamiento farmacológico , Humanos , Neoplasias Pulmonares/tratamiento farmacológico , Recuento de Linfocitos , Estadificación de Neoplasias , Pronóstico , Estudios Retrospectivos
3.
Angiogenesis ; 19(2): 191-200, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26899730

RESUMEN

BACKGROUND: Vasculogenic mimicry (VM) is the formation of vascular channels by tumor cells or tumor cell-derived, trans-differentiated cells in highly aggressive, solid tumors. However, the disease features and prognostic value of VM for overall survival of cancer patients remain controversial. METHOD: To systematically investigate the roles of VM in cancer progression and its prognostic values, we performed a meta-analysis based on 36 studies (33 eligible articles) including 3609 patients. The pooled hazard ratios (HRs) with 95 % confidence intervals (95 % CIs) were used to assess the relationship between VM and overall survival in cancer patients. RESULTS: Vasculogenic mimicry was significantly associated with cancer differentiation, lymph node metastasis, distant metastasis, and TNM stage. The prognostic value of VM was significant in overall survival (HR 2.16; 95 % CI 1.98-2.38; P < 0.001). Analyses stratified by confounders, such as cancer type, ethnicity, VM detection methods, sample size, and Newcastle-Ottawa quality score, found similar significant results. CONCLUSIONS: The presence of VM predicts poorer survival outcomes in cancer patients.


Asunto(s)
Neoplasias/irrigación sanguínea , Neoplasias/diagnóstico , Neovascularización Patológica/patología , Heterogeneidad Genética , Humanos , Pronóstico , Sesgo de Publicación , Análisis de Supervivencia
4.
Horm Metab Res ; 47(7): 485-90, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25565095

RESUMEN

Previous studies on the association between sex hormone binding globulin (SHBG) level and risk of breast cancer in postmenopausal women reported conflicting results. A meta-analysis of prospective studies was performed to evaluate the association between SHBG level and risk of breast cancer in postmenopausal women. Pubmed (1980 to July 2014) and EMBASE (1988 to July 2014) were searched for eligible studies. Eligible studies were prospective cohort or nested case-control studies on the association between SHBG level and risk of breast cancer in postmenopausal women. Meta-analysis using random-effects model was performed to calculate the pooled risk ratios (RRs) with 95% confidence intervals (95% CIs). Of 946 studies identified, 26 prospective studies from 21 publications were finally included in the meta-analysis. In postmenopausal women, the pooled RR for breast cancer comparing highest with lowest categories of SHBG was 0.64 (95% CI 0.57-0.72, p<0.001, I(2)=6.5%). The pooled RRs were not obviously altered in the sensitivity analyses and subgroup analyses. In cumulative meta-analysis, a more significant association between SHBG level and risk of breast cancer in postmenopausal women was observed as evidence accumulated by publication year. There was no obvious risk of publication bias. High SHBG level is significantly associated with decreased risk of breast cancer in postmenopausal women, and it's a protective factor of breast cancer in postmenopausal women.


Asunto(s)
Neoplasias de la Mama/sangre , Posmenopausia/sangre , Globulina de Unión a Hormona Sexual/metabolismo , Femenino , Humanos , Riesgo
5.
Nucleic Acids Res ; 28(21): 4097-104, 2000 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-11058105

RESUMEN

Ribonucleases with antitumor activity are mainly found in the oocytes and embryos of frogs, but the role of these ribonucleases in frog development is not clear. Moreover, most frog ribonuclease genes have not been cloned and characterized. In the present study, a group of ribonucleases were isolated from Rana catesbeiana (bullfrog). These ribonucleases in mature oocytes, namely RC-RNase, RC-RNase 2, RC-RNase 3, RC-RNase 4, RC-RNase 5 and RC-RNase 6, as well as liver-specific ribonuclease RC-RNase L1, were purified by column chromatographs and detected by zymogram assay and western blotting. Characterization of these purified ribonucleases revealed that they were highly conserved in amino acid sequence and had a pyroglutamate residue at their N-termini, but possessed different specific activities, base specificities and optimal pH values for their activities. These ribonucleases were cytotoxic to cervical carcinoma HeLa cells, but their cytotoxicities were not closely correlated to their enzymatic specific activities. Some other amino acid residues in addition to their catalytic residues were implicated to be involved in the cytotoxicity of the frog ribonucleases to tumor cells. Because the coding regions lack introns, the ribonuclease genes were cloned by PCR using genomic DNA as template. Their DNA sequences and amino acid sequences are homologous to those of mammalian ribonuclease superfamily, approximately 50 and approximately 25%, respectively.


Asunto(s)
Ranidae/genética , Ribonucleasas/aislamiento & purificación , Ribonucleasas/toxicidad , Secuencia de Aminoácidos , Animales , Western Blotting , Catálisis , Supervivencia Celular/efectos de los fármacos , Clonación Molecular , Femenino , Células HeLa , Humanos , Concentración 50 Inhibidora , Hígado/enzimología , Hígado/metabolismo , Espectrometría de Masas , Datos de Secuencia Molecular , Familia de Multigenes/genética , Oligorribonucleótidos/síntesis química , Oligorribonucleótidos/química , Oligorribonucleótidos/genética , Oligorribonucleótidos/metabolismo , Oocitos/química , Filogenia , ARN/síntesis química , ARN/química , ARN/genética , ARN/metabolismo , Ribonucleasas/química , Ribonucleasas/genética , Alineación de Secuencia , Análisis de Secuencia , Especificidad por Sustrato
6.
Rev Sci Instrum ; 83(10): 103904, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23126779

RESUMEN

This study developed a novel type of normalization procedure for modulation reflectance spectroscopy experiments to obtain the relative change in the reflectance spectrum, ΔR/R. This technique uses a polymer-dispersed liquid crystal to ensure that the dc component of the signal from the detector remained constant by varying the intensity of the light striking the sample. This method is particularly useful for photoreflectance measurement, which may encounter background problems because of scattered pump light and/or photoluminescence. It does not require a change in the gain of the detector or the use of a variable neutral density filter mounted on a servo-motor.

7.
Mol Biol Rep ; 20(3): 149-54, 1994.
Artículo en Inglés | MEDLINE | ID: mdl-7565655

RESUMEN

Ribonucleases are widely found on the tissues of living organisms, but the functions of individual ribonucleases are not clear. To facilitate characterization of individual ribonucleases, I have developed a rapid method to separate and identify each ribonuclease from a crude sample by gel electrophoresis instead of by time-consuming purification steps. The ribonucleases in a crude sample are first separated by RNA-cast SDS-polyacrylamide gel electrophoresis and then eluted from the gel after ethidium bromide staining. To determine the base specificity of each ribonuclease, a 5' labelled oligonucleotide with known sequence is added to the enzyme eluate and the digested products are analyzed by denaturing gel electrophoresis. The base specificity of bovine pancreatic ribonuclease (RNase A), bullfrog oocyte-specific ribonuclease (RC-RNase), human serum ribonucleases and sweet potato leaf ribonucleases were determined by this method. Other properties of individual ribonucleases, e.g. substrate preference, may also be determined from crude samples by this method without further purification steps.


Asunto(s)
Electroforesis en Gel de Poliacrilamida/métodos , Ribonucleasas/aislamiento & purificación , Ribonucleasas/metabolismo , Animales , Secuencia de Bases , Bovinos , Enzimas/sangre , Humanos , Datos de Secuencia Molecular , Oocitos/enzimología , Páncreas/enzimología , Especificidad de la Especie , Especificidad por Sustrato , Verduras/enzimología
8.
Nucleic Acids Res ; 20(6): 1371-7, 1992 Mar 25.
Artículo en Inglés | MEDLINE | ID: mdl-1373237

RESUMEN

A pyrimidine-guanine sequence-specific ribonuclease (RC-RNase) was purified from Rana catesbeiana (bullfrog) oocytes by sequential phosphocellulose, Sephadex G75, heparin Sepharose CL 6B and CM-Sepharose CL 6B column chromatography. The purified enzyme with molecular weight of 13,000 daltons gave a single band on SDS-polyacrylamide gel. One CNBr-cleaved fragment has a sequence of NVLSTTRFQLNT/TRTSITPR, which is identical to residues 59-79 of a sialic acid binding lectin from R. catesbeiana eggs, and is 71% homologous to residues 60-80 of an RNase from R. catesbeaina liver. The RC-RNase preferentially cleaved RNA at pyrimidine residues with a 3' flanking guanine under various conditions. The sequence specificity of RC-RNase was further confirmed with dinucleotide as substrates, which were analyzed by thin layer chromatography after enzyme digestion. The values of kcat/km for pCpG, pUpG and pUpU were 2.66 x 10(7) M-1s-1, 2.50 x 10(7) M-1s-1 and 2.44 x 10(6) M-1s-1 respectively, however, those for other phosphorylated dinucleotides were less than 2% of pCpG and pUpG. As compared to single strand RNA, double strand RNA was relatively resistant to RC-RNase. Besides poly (A) and poly (G), most of synthetic homo- and heteropolynucleotides were also susceptible to RC-RNase. The RC-RNase was stable in the acidic (pH 2) and alkaline (pH 12) condition, but could be inactivated by heating to 80 degrees C for 15 min. No divalent cation was required for its activity. Furthermore, the enzyme activity could be enhanced by 2 M urea, and inhibited to 50% by 0.12 M NaCl or 0.02% SDS.


Asunto(s)
Guanina/metabolismo , Oocitos/enzimología , Pirimidinas/metabolismo , ARN/metabolismo , Ribonucleasas/metabolismo , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Electroforesis en Gel de Poliacrilamida , Datos de Secuencia Molecular , Rana catesbeiana , Ribonucleasas/aislamiento & purificación , Especificidad por Sustrato , Temperatura
9.
Eur J Biochem ; 222(1): 215-20, 1994 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-8200346

RESUMEN

Rana catesbeiana ribonuclease (RC-RNase) is a pyrimidine guanine sequence-specific ribonuclease found only in R. catesbeiana (bullfrog) oocytes, not in other organs. An immunohistochemical assay showed that RC-RNase was present in the regular yolk granules, but not in forming yolk granules, yolk platelets, pigment granules, mitochondria clouds or the nucleus. The RC-RNase was restricted to the lateral amorphous area of the yolk granules, and was absent from the central area that has a vitellogenin crystal lattice. The RC-RNase was extracted from yolk granules by 0.5 M NaCl and purified by dialysis and affinity chromatography. Most of the RC-RNase (94%) was found in the yolk granules, the rest RC-RNase (6%) was found in the cytosol in the form of free RNase and latent RNase. The RC-RNase extracted from yolk granules was further analyzed by immunoprecipitation and RNase activity assay on an SDS/polyacrylamide gel. Our results suggest that the RC-RNase activity is regulated by both compartmentation and inhibitor binding.


Asunto(s)
Yema de Huevo/enzimología , Oocitos/enzimología , Ribonucleasas/metabolismo , Animales , Compartimento Celular , Electroforesis en Gel de Poliacrilamida , Femenino , Pruebas de Precipitina , Rana catesbeiana , Ribonucleasas/aislamiento & purificación , Distribución Tisular
10.
J Biol Chem ; 261(29): 13714-9, 1986 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-3020043

RESUMEN

Ten min after infection of Xanthomonas campestris pv. oryzae by phage Xp10, a sharp decrease in the activity of the host RNA polymerase was observed. Host RNA polymerase from phage-infected and uninfected cells was purified, and their properties were compared. The enzyme from uninfected cells contained four polypeptides with Mr = 155,000, 155,000, 93,000, and 37,000, respectively, and assembled with a stoichiometry of alpha 2 beta beta' sigma. The enzyme from infected cells lacked the sigma-subunit. The enzyme from uninfected cells utilized Xp10 DNA and poly[d(A-T)] as templates, the enzyme from phage-infected cells failed to transcribe Xp10 DNA, but retained the ability to transcribe poly(A-T). The regions of the Xp10 genome transcribed by the two enzymes were also investigated. The enzyme from uninfected cells transcribed the leftmost 25-30% of the Xp10 genome. The enzyme from phage-infected cells also transcribed the same region, but the enzyme activity was very low. Other properties such as (a) the response to RNA polymerase inhibitors, (b) the effect of N-ethylmaleimide, (c) the requirement of Mg2+ and Mn2+, and (d) the optimum temperature and pH of the two enzymes were very similar.


Asunto(s)
Bacteriófagos/genética , ARN Polimerasas Dirigidas por ADN/metabolismo , Factor sigma/metabolismo , Factores de Transcripción/metabolismo , Xanthomonas/genética , Bacteriófagos/metabolismo , Enzimas de Restricción del ADN , ARN Polimerasas Dirigidas por ADN/aislamiento & purificación , Cinética , Transcripción Genética , Xanthomonas/metabolismo
11.
J Virol ; 61(5): 1695-9, 1987 May.
Artículo en Inglés | MEDLINE | ID: mdl-3573148

RESUMEN

Results of in vivo studies showed that the transcription of the Xp10 genome in Xp10-infected cells shifted from rifampin sensitivity to rifampin resistance. Results of in vitro studies showed that a rapid reduction of rifampin-sensitive RNA polymerase activity coincided with a rapid increase of rifampin-resistant RNA polymerase activity in cell extracts with time after infection. Host and Xp10-encoded RNA polymerases were purified, and the transcripts from these two enzymes were hybridized to the restriction fragments of Xp10 DNA. The RNA probe generated by host RNA polymerase hybridized strongly to the leftmost 25% of Xp10 DNA and weakly to the rightmost 75% of Xp10 DNA. The RNA probe generated by Xp10 RNA polymerase hybridized strongly to the rightmost 75% of Xp10 DNA and weakly to the leftmost 25% of Xp10 DNA. Studies with 32P-labeled RNA isolated at various intervals after infection did not reveal any evidence for early versus late differences in transcription.


Asunto(s)
Bacteriófagos/genética , Xanthomonas/genética , ADN Viral/genética , ARN Polimerasas Dirigidas por ADN/antagonistas & inhibidores , ARN Polimerasas Dirigidas por ADN/metabolismo , Regulación de la Expresión Génica , Genes Virales , ARN Viral/genética , Rifampin/farmacología , Factores de Tiempo , Transcripción Genética/efectos de los fármacos , Replicación Viral/efectos de los fármacos
12.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 11): 1697-9, 2001 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-11679749

RESUMEN

RC-RNases are ribonucleases from Rana catesbeiana oocytes with pyrimidine-guanine sequence specificity. They also possess cell cytotoxicity and lectin activity. Protein crystals of three RC-RNase isozymes, RC-RNase 3, RC-RNase 4 and RC-RNase 6, were grown in various crystal systems under different conditions. Crystals of RC-RNase3 belong to the orthorhombic C222(1) space group, with unit-cell parameters a = 66.66, b = 97.38, c = 85.74 A. Crystals of RC-RNase 4 belong to the trigonal space group P3(1) or P3(2), with unit-cell parameters a = b = 32.22, c = 92.12 A. Crystals of RC-RNase 6 complexed with cytidylyl 2'-5' guanosine belong to the tetragonal space group P4(1)2(1)2 or P4(3)2(1)2, with unit-cell parameters a = b = 61.80, c = 65.96 A.


Asunto(s)
Proteínas Anfibias , Endorribonucleasas/química , Rana catesbeiana/metabolismo , Ribonucleasas , Animales , Proteínas Sanguíneas/química , Cristalización , Cristalografía por Rayos X , Proteínas en los Gránulos del Eosinófilo , Conformación Proteica
13.
J Biol Chem ; 263(21): 10295-9, 1988 Jul 25.
Artículo en Inglés | MEDLINE | ID: mdl-3292524

RESUMEN

A 1.5-kilobase DNA fragment containing the Xenopus transcription factor IIIA (TFIIIA) gene was inserted into the prokaryotic expression vector pIN-III(A) containing the lpp/lac promoter. The recombinant DNA was introduced into Escherichia coli K-12 strain SB221. The expression TFIIIA gene was induced by isopropyl-beta-D-thiogalactopyranoside, which resulted in the synthesis of a recombinant TFIIIA with an extra 17 amino acids fused to its N terminus as predicted from the nucleotide sequence. The engineered gene product, purified to at least 90% homogeneity, retained its binding affinity to the intragenic control region of the 5 S RNA gene, as well as its activity to stimulate 5 S RNA gene transcription in vitro.


Asunto(s)
Escherichia coli/genética , Genes , ARN Ribosómico 5S/genética , ARN Ribosómico/genética , Factores de Transcripción/genética , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Clonación Molecular , Vectores Genéticos , Datos de Secuencia Molecular , Plásmidos , Regiones Promotoras Genéticas , Proteínas Recombinantes/aislamiento & purificación , Factor de Transcripción TFIIIA , Factores de Transcripción/biosíntesis , Factores de Transcripción/aislamiento & purificación , Xenopus
14.
Eur J Biochem ; 157(3): 571-7, 1986 Jun 16.
Artículo en Inglés | MEDLINE | ID: mdl-3720743

RESUMEN

A bacteriophage-coded RNA polymerase was isolated from bacteriophage-Xp10-infected Xanthomonas campestris pv. oryzae. The enzyme was purified to homogeneity through precipitation by poly(ethylene glycol) and chromatography on DEAE-cellulose, heparin--Sepharose 4B and blue-dextran--Sepharose 4B. It is composed of a single polypeptide of Mr96,000. The enzyme preferred denatured Xp10 DNA, calf thymus DNA, host bacterium DNA and poly[d(A-T)] as templates. The optimal concentration of MgCl2 is 16 mM. The optimal temperature and pH are 37 degrees C and 8.0, respectively. The Km of ATP is 26 microM. DNA, MgCl2 and four ribonucleotides were required for enzyme activity. If ATP alone was present, half of the Xp10 RNA polymerase activity was retained. The enzyme activity was inhibited by KCl, spermidine, actinomycin D, heparin, blue dextran and ethidium bromide; it was resistant to rifampicin and streptovaricin. N-Ethylmaleimide did not affect the enzyme activity. The transcription site and product of Xp10 RNA polymerase upon Xp10 DNA were analyzed by DNA/RNA hybridization and polyacrylamide-agarose composite gel electrophoresis. The enzyme could specifically transcribe the late region of Xp10 genome and produce two RNA bands.


Asunto(s)
Bacteriófagos/enzimología , ARN Polimerasas Dirigidas por ADN/metabolismo , Adenosina Trifosfato/farmacología , Cationes , Cromatografía , ADN/metabolismo , ADN Bacteriano/metabolismo , ADN Viral/metabolismo , ARN Polimerasas Dirigidas por ADN/antagonistas & inhibidores , ARN Polimerasas Dirigidas por ADN/aislamiento & purificación , Espermidina/farmacología , Especificidad por Sustrato , Moldes Genéticos , Transcripción Genética , Xanthomonas
15.
Anal Biochem ; 168(1): 156-63, 1988 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-2452584

RESUMEN

A simple and efficient method for purifying Xenopus transcription factor IIIA from the 7 S particle has been developed by taking advantage of the differential solubilities of the protein factor and 5 S RNA in ammonium sulfate solution. Conditions under which ammonium sulfate dissociates the 7 S particle and selectively precipitates factor IIIA while the 5 S RNA moiety remains in the supernatant were found. The method simultaneously purifies, in a nondestructive manner, both factor IIIA and 5 S RNA in high yield. Purification proceeds through several ammonium sulfate precipitations of the 7 S particle. Factor IIIA obtained by this method contains no detectable RNA and is highly active as judged by DNase I footprinting and in vitro transcription of the 5 S RNA gene, as well as reconstitution with 5 S RNA to form the 7 S particle. The molar extinction coefficients of factor IIIA at 205 and 280 nm were determined from the ultraviolet absorption spectra measured with the purified protein.


Asunto(s)
ARN/aislamiento & purificación , Ribonucleoproteínas/análisis , Factores de Transcripción/aislamiento & purificación , Sulfato de Amonio , Animales , Precipitación Química , Electroforesis en Gel de Poliacrilamida , Femenino , Técnicas In Vitro , Peso Molecular , Oocitos/análisis , Espectrofotometría Ultravioleta , Factor de Transcripción TFIIIA , Factores de Transcripción/fisiología , Transcripción Genética , Xenopus laevis
16.
Protein Expr Purif ; 7(2): 194-202, 1996 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-8812861

RESUMEN

Rana catesbeiana ribonuclease (RC-RNase) is a pyrimidine-guanine sequence-specific ribonuclease found only in R. catesbeiana (bullfrog) oocytes, but not in other organs. The protein is localized in the yolk granules of oocytes but not in other organelles, as detected by immunohistochemistry. More than 99% of RC-RNase was found in the yolk granule pellet when a mild separation method was employed under physiological conditions. The ribonuclease was purified by precipitation of yolk granules, extraction of RC-RNase with 0.09 M NaCl, selective removal of impurities by Hepes buffer, and chromatographies on phosphocellulose and carboxymethyl cellulose columns. Three milligrams of RC-RNase was purified from a 1-g pellet of yolk granules prepared from 2 g of ovary tissue. Therefore, 150 milligrams of RC-RNase could be obtained from a mature female bullfrog (600 g in weight) which had 100 g of ovary tissue. The properties of RC-RNase isolated from yolk granules tested so far are identical to those of RC-RNase isolated from the cytosolic fraction and similar to those of a sialic acid-binding lectin from bullfrog oocytes. To investigate the possible role of RC-RNase in the regulation of cell growth and differentiation during embryogenesis, its cytotoxic activity against various cell lines was examined. The degradation of ribosomal RNA was found in RC-RNase-treated HeLa cells. However, both events were not found in RNase A-treated HeLa cells. Therefore, RC-RNase is proposed to have both ribonucleolytic and cytotoxic activity and a specific receptor on the tumor cell surface is suspected to be involved in the recognition and binding, and possibly entry of RC-RNase.


Asunto(s)
Oocitos/enzimología , Rana catesbeiana/metabolismo , Ribonucleasas/aislamiento & purificación , Ribonucleasas/toxicidad , Secuencia de Aminoácidos , Animales , Secuencia de Bases , División Celular/efectos de los fármacos , Extractos Celulares/química , China , Cromatografía por Intercambio Iónico , Electroforesis en Gel de Poliacrilamida , Células HeLa/efectos de los fármacos , Humanos , Masculino , Datos de Secuencia Molecular , Oligorribonucleótidos/química , Oligorribonucleótidos/metabolismo , Pruebas de Precipitina , ARN/metabolismo , Ribonucleasas/farmacología , Análisis de Secuencia , Cloruro de Sodio/farmacología , Saco Vitelino/enzimología
17.
Biochemistry ; 28(25): 9790-5, 1989 Dec 12.
Artículo en Inglés | MEDLINE | ID: mdl-2611263

RESUMEN

Xenopus transcription factor IIIA (TFIIIA) contains two tightly bound intrinsic Zn2+ ions that are released through treatment with either p-(hydroxymercuri)benzenesulfonate (PMPS) or diethyl pyrocarbonate (DEP) as monitored by the metallochromic indicator 4-(2-pyridylazo)resorcinol (PAR). The inactivation of TFIIIA by DEP as detected by an in vitro 5S RNA gene transcription assay was correlated with the extent of modification of histidine residues and Zn2+ release. Following reaction with PMPS, the 7S particle was dissociated into free TFIIIA and 5S RNA. This dissociation could be correlated with the extent of modification of cysteine residues as well as the Zn2+ release. The dissociation of the 7S particle was reversed by the addition of excess thiol reagent. However, the reversibility could be inhibited by EDTA, suggesting that Zn2+ was required for the binding of TFIIIA to 5S RNA. In the presence of PMPS- or DEP-modified TFIIIA or Zn2+-depleted TFIIIA, the fluorescence emission maximum of the hydrophobic probe, 8-anilinonaphthalenesulfonate, was blue-shifted by 30 nm, while only less than a 10-nm blue shift was observed in the presence of either the 7S particle or TFIIIA. These results indicate that the two Zn2+ ions in TFIIIA are coordinated with the cysteine and histidine residues and are required for maintenance of the proper conformation of TFIIIA.


Asunto(s)
Compuestos de Fenilmercurio/farmacología , Factores de Transcripción , Zinc/farmacocinética , Animales , Cisteína/farmacología , Histidina/farmacología , Oocitos/efectos de los fármacos , Oocitos/metabolismo , Conformación Proteica/efectos de los fármacos , Espectrometría de Fluorescencia , Compuestos de Sulfhidrilo/farmacología , Factor de Transcripción TFIIIA , Xenopus laevis
18.
J Mol Evol ; 53(1): 31-8, 2001 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-11683320

RESUMEN

We present sequences of five novel RNase A superfamily ribonuclease genes of the bullfrog, Rana catesbeiana. All five genes encode ribonucleases that are similar to Onconase, a cytotoxic ribonuclease isolated from oocytes of R. pipiens. With amino acid sequence data from 14 ribonucleases from three Rana species (R. catesbeiana, R. japonica, and R. pipiens), we have constructed bootstrap-supported phylogenetic trees that reorganize these ribonucleases into five distinct lineages--the pancreatic ribonucleases (RNases 1), the eosinophil-associated ribonucleases (RNases 2, 3, and 6), the ribonucleases 4, the angiogenins (RNases 5) and the Rana ribonucleases--with the Rana ribonucleases no more closely related to the angiogenins than they are to any of the other ribonuclease lineages shown. Further phylogenetic analysis suggests the division of the Rana ribonucleases into two subclusters (A and B), with positive (Darwinian) selection (dN/dS > 1.0) and an elevated rate of radical nonsynonymous substitution (dR) contributing to the rapid diversification of ribonucleases within each cluster. This pattern of evolution-rapid diversification via positive selection among sequences of a multigene cluster-bears striking resemblance to what we have described for the eosinophil-associated ribonuclease genes of the rodent Mus musculus, a finding that may have implications with respect the physiologic function of this unique family of proteins.


Asunto(s)
Evolución Molecular , Rana catesbeiana/genética , Ribonucleasa Pancreática/genética , Secuencia de Aminoácidos , Animales , Humanos , Datos de Secuencia Molecular , Familia de Multigenes , Filogenia , Rana catesbeiana/fisiología , Ribonucleasa Pancreática/química , Ribonucleasa Pancreática/clasificación , Alineación de Secuencia
19.
Cell Tissue Res ; 280(2): 259-65, 1995 May.
Artículo en Inglés | MEDLINE | ID: mdl-7781023

RESUMEN

To determine the localization of the pyrimidine-guanine sequence-specific ribonuclease in Rana catesbeiana (bullfrog) oocytes, the RNase was first isolated and used to prepare a specific rabbit antiserum. Only one protein of similar molecular size to the RNase was immunoprecipitated from ovary homogenate by the antiserum, but two bands were observed by Western blotting analysis. These two proteins were shown by further purification of antibody and Western blotting analysis to have similar antigenicity. Immunoprecipitation and Western blotting of tissue homogenates showed that the RNase was found predominantly in the ovary, but not in other tissues. The specific localization of the RNase was determined by immuno-electron microscopy of oocyte sections incubated with the specific antiserum; the yolk granules, but not other organelles, were found to contain the RNase. Most of the RNase was evenly distributed in the lateral amorphous area of the yolk granule but not in the central yolk crystal area which contains stored vitellogenin proteins. Our results indicate that the RNase is compartmentalized in the yolk granules of oocytes, which might prevent damage to cellular RNAs.


Asunto(s)
Proteínas Anfibias , Proteínas del Huevo/análisis , Endorribonucleasas/análisis , Oocitos/enzimología , Rana catesbeiana/metabolismo , Animales , Western Blotting , Compartimento Celular , Gránulos Citoplasmáticos/enzimología , Sueros Inmunes , Peso Molecular , Oocitos/ultraestructura
20.
J Biomol NMR ; 8(3): 331-44, 1996 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-8953220

RESUMEN

RC-RNase is a pyrimidine-guanine sequence-specific ribonuclease and a sialic-acid-binding lectin purified from Rana catesbeiana (bullfrog) oocytes. This 111-amino acid protein exhibits cytotoxicity toward several tumor cell lines. In this paper we report the assignments of proton NMR resonances and the identification of the secondary structure deduced from NOE constraints, chemical shift index, 3JNH alpha and amide proton exchange rates. The protein was directly isolated from bullfrog oocytes; we were able to assign all but five of the amino acid backbone protons of the unlabeled protein by analyzing a large set of two-dimensional proton NMR spectra obtained at several temperatures and pH conditions. Our results indicate that the structure of RC-RNase is dominated by the presence of two triple-stranded antiparallel beta-sheets and three alpha-helices, similar to those of the pyrimidine family ribonucleases. Two sets of resonances were observed for 11 amide protons and 8 alpha-protons located in the loop-1 region, an alpha 2 helix, and three beta-strands, (beta 1, beta 3 and beta 4), suggesting the presence of nonlocalized multiple conformations for RC-RNase.


Asunto(s)
Oocitos/enzimología , Ribonucleasas/química , Secuencia de Aminoácidos , Animales , Femenino , Guanina , Espectroscopía de Resonancia Magnética , Datos de Secuencia Molecular , Estructura Secundaria de Proteína , Pirimidinas , Rana catesbeiana , Alineación de Secuencia , Análisis de Secuencia
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