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1.

NANOG is required to establish the competence for germ-layer differentiation in the basal tetrapod axolotl.

Simpson, Luke A; Crowley, Darren; Forey, Teri; Acosta, Helena; Ferjentsik, Zoltan; Chatfield, Jodie; Payne, Alexander; Simpson, Benjamin S; Redwood, Catherine; Dixon, James E; Holmes, Nadine; Sang, Fei; Alberio, Ramiro; Loose, Matthew; Johnson, Andrew D.

PLoS Biol; 21(6): e3002121, 2023 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-37315073

2.

Telomere-to-telomere assembly of a complete human X chromosome.

Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; Fredrickson, Jeanne; Pak, Evgenia; Tigyi, Kristof; Kremitzki, Milinn; Markovic, Christopher; Maduro, Valerie; Dutra, Amalia; Bouffard, Gerard G; Chang, Alexander M; Hansen, Nancy F; Wilfert, Amy B; Thibaud-Nissen, Françoise; Schmitt, Anthony D; Belton, Jon-Matthew; Selvaraj, Siddarth; Dennis, Megan Y; Soto, Daniela C; Sahasrabudhe, Ruta; Kaya, Gulhan; Quick, Josh; Loman, Nicholas J; Holmes, Nadine; Loose, Matthew; Surti, Urvashi; Risques, Rosa Ana; Graves Lindsay, Tina A; Fulton, Robert; Hall, Ira; Paten, Benedict; Howe, Kerstin; Timp, Winston; Young, Alice; Mullikin, James C; Pevzner, Pavel A; Gerton, Jennifer L.

Nature; 585(7823): 79-84, 2020 09.

Artículo en Inglés | MEDLINE | ID: mdl-32663838

3.

Icarust, a real-time simulator for Oxford Nanopore adaptive sampling.

Munro, Rory; Wibowo, Satrio; Payne, Alexander; Loose, Matthew.

Bioinformatics; 40(4)2024 Mar 29.

Artículo en Inglés | MEDLINE | ID: mdl-38478392

4.

Lack of detection of SARS-CoV-2 in British wildlife 2020-21 and first description of a stoat (Mustela erminea) Minacovirus.

Apaa, Ternenge; Withers, Amy J; Mackenzie, Laura; Staley, Ceri; Dessi, Nicola; Blanchard, Adam; Bennett, Malcolm; Bremner-Harrison, Samantha; Chadwick, Elizabeth A; Hailer, Frank; Harrison, Stephen W R; Lambin, Xavier; Loose, Matthew; Mathews, Fiona; Tarlinton, Rachael.

J Gen Virol; 104(12)2023 12.

Artículo en Inglés | MEDLINE | ID: mdl-38059490

5.

Sarbecoviruses of British horseshoe bats; sequence variation and epidemiology.

Apaa, Ternenge; Withers, Amy J; Staley, Ceri; Blanchard, Adam; Bennett, Malcolm; Bremner-Harrison, Samantha; Chadwick, Elizabeth A; Hailer, Frank; Harrison, Stephen W R; Loose, Matthew; Mathews, Fiona; Tarlinton, Rachael.

J Gen Virol; 104(6)2023 06.

Artículo en Inglés | MEDLINE | ID: mdl-37319000

6.

Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome.

Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston.

Nat Methods; 17(1): 114, 2020 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-31819268

7.

minoTour, real-time monitoring and analysis for nanopore sequencers.

Munro, Rory; Santos, Roberto; Payne, Alexander; Forey, Teri; Osei, Solomon; Holmes, Nadine; Loose, Matthew.

Bioinformatics; 38(4): 1133-1135, 2022 01 27.

Artículo en Inglés | MEDLINE | ID: mdl-34791062

8.

The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks.

Francis, Rodric V; Billam, Harriet; Clarke, Mitch; Yates, Carl; Tsoleridis, Theocharis; Berry, Louise; Mahida, Nikunj; Irving, William L; Moore, Christopher; Holmes, Nadine; Ball, Jonathan K; Loose, Matthew; McClure, C Patrick.

J Infect Dis; 225(1): 10-18, 2022 01 05.

Artículo en Inglés | MEDLINE | ID: mdl-34555152

9.

Nanopore native RNA sequencing of a human poly(A) transcriptome.

Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston.

Nat Methods; 16(12): 1297-1305, 2019 12.

Artículo en Inglés | MEDLINE | ID: mdl-31740818

10.

Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom.

Chappell, Joseph G; Tsoleridis, Theocharis; Clark, Gemma; Berry, Louise; Holmes, Nadine; Moore, Christopher; Carlile, Matthew; Sang, Fei; Debebe, Bisrat J; Wright, Victoria; Irving, William L; Thomson, Brian J; Boswell, Timothy C J; Willingham, Iona; Joseph, Amelia; Smith, Wendy; Khakh, Manjinder; Fleming, Vicki M; Lister, Michelle M; Howson-Wells, Hannah C; Holmes, Edward C; Loose, Matthew W; Ball, Jonathan K; McClure, C Patrick.

J Gen Virol; 102(6)2021 06.

Artículo en Inglés | MEDLINE | ID: mdl-34130773

11.

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.

Payne, Alexander; Holmes, Nadine; Rakyan, Vardhman; Loose, Matthew.

Bioinformatics; 35(13): 2193-2198, 2019 07 01.

Artículo en Inglés | MEDLINE | ID: mdl-30462145

12.

The potential impact of nanopore sequencing on human genetics.

Loose, Matthew W.

Hum Mol Genet; 26(R2): R202-R207, 2017 10 01.

Artículo en Inglés | MEDLINE | ID: mdl-28977449

13.

Real-time selective sequencing using nanopore technology.

Loose, Matthew; Malla, Sunir; Stout, Michael.

Nat Methods; 13(9): 751-4, 2016 09.

Artículo en Inglés | MEDLINE | ID: mdl-27454285

14.

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples.

Votintseva, Antonina A; Bradley, Phelim; Pankhurst, Louise; Del Ojo Elias, Carlos; Loose, Matthew; Nilgiriwala, Kayzad; Chatterjee, Anirvan; Smith, E Grace; Sanderson, Nicolas; Walker, Timothy M; Morgan, Marcus R; Wyllie, David H; Walker, A Sarah; Peto, Tim E A; Crook, Derrick W; Iqbal, Zamin.

J Clin Microbiol; 55(5): 1285-1298, 2017 05.

Artículo en Inglés | MEDLINE | ID: mdl-28275074

15.

Rapid-CNS²: rapid comprehensive adaptive nanopore-sequencing of CNS tumors, a proof-of-concept study.

Patel, Areeba; Dogan, Helin; Payne, Alexander; Krause, Elena; Sievers, Philipp; Schoebe, Natalie; Schrimpf, Daniel; Blume, Christina; Stichel, Damian; Holmes, Nadine; Euskirchen, Philipp; Hench, Jürgen; Frank, Stephan; Rosenstiel-Goidts, Violaine; Ratliff, Miriam; Etminan, Nima; Unterberg, Andreas; Dieterich, Christoph; Herold-Mende, Christel; Pfister, Stefan M; Wick, Wolfgang; Loose, Matthew; von Deimling, Andreas; Sill, Martin; Jones, David T W; Schlesner, Matthias; Sahm, Felix.

Acta Neuropathol; 143(5): 609-612, 2022 05.

Artículo en Inglés | MEDLINE | ID: mdl-35357562

16.

Kinetochore assembly and heterochromatin formation occur autonomously in Schizosaccharomyces pombe.

Brown, William R A; Thomas, Geraint; Lee, Nicholas C O; Blythe, Martin; Liti, Gianni; Warringer, Jonas; Loose, Matthew W.

Proc Natl Acad Sci U S A; 111(5): 1903-8, 2014 Feb 04.

Artículo en Inglés | MEDLINE | ID: mdl-24449889

17.

AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts.

Evans, Teri; Loose, Matthew.

BMC Bioinformatics; 16: 376, 2015 Nov 09.

Artículo en Inglés | MEDLINE | ID: mdl-26553107

18.

Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity.

Chen, Wei-Chung; Pauls, Stefan; Bacha, Jamil; Elgar, Greg; Loose, Matthew; Shimeld, Sebastian M.

Dev Biol; 390(2): 261-72, 2014 Jun 15.

Artículo en Inglés | MEDLINE | ID: mdl-24680932

19.

Transcriptional bursting diversifies the behaviour of a toggle switch: hybrid simulation of stochastic gene expression.

Bokes, Pavol; King, John R; Wood, Andrew T A; Loose, Matthew.

Bull Math Biol; 75(2): 351-71, 2013 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-23354929

20.

Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design.

Weilguny, Lukas; De Maio, Nicola; Munro, Rory; Manser, Charlotte; Birney, Ewan; Loose, Matthew; Goldman, Nick.

Nat Biotechnol; 41(7): 1018-1025, 2023 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-36593407

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