Nutrient supplementation-induced metabolic profile changes and early appearance of free N-glycans in nutrient deficient tomato plants revealed by mass spectrometry.

Inorganic fertilizers are routinely used in large scale crop production for the supplementation of nitrogen, phosphorus, and potassium in nutrient poor soil. To explore metabolic changes in tomato plants grown on humic sand under different nutritional conditions, matrix-assisted laser desorption ionization (MALDI) mass spectrometry was utilized for the analysis of xylem sap. Variations in the abundances of metabolites and oligosaccharides, including free N-glycans (FNGs), were determined. Statistical analysis of the sample-related peaks revealed significant differences in the abundance ratios of multiple metabolites, including oligosaccharides, between the control plants, grown with no fertilizers, and plants raised under "ideal" and "nitrogen deficient" nutritional conditions, i.e., under the three treatment types. Among the 36 spectral features tentatively identified as oligosaccharides, the potential molecular structures for 18 species were predicted based on their accurate masses and isotope distribution patterns. To find the spectral features that account for most of the differences between the spectra corresponding to the three different treatments, multivariate statistical analysis was carried out by orthogonal partial least squares-discriminant analysis (OPLS-DA). They included both FNGs and non-FNG compounds that can be considered as early indicators of nutrient deficiency. Our results reveal that the potential nutrient deficiency indicators can be expanded to other metabolites beyond FNGs. The m/z values for 20 spectral features with the highest variable influence on projection (VIP) scores were ranked in the order of their influence on the statistical model.

Determination of complex type free, non-conjugated oligosaccharide glucose unit values in tomato xylem sap for early detection of nutrient deficiency.

Although knowledge on glycan biosynthesis and processing is continuously maturing, there are still a limited number of studies that examine biological functions of N-glycan structures in plants, which remain virtually unknown. Here, the statistical correlation between nutrient (nitrogen) deficiency symptoms of crops and changes in 8-aminopyrene-1,3,6-trisulfonic acid (APTS)-labeled complex type free oligosaccharides is reported. While deficiency symptoms are predicted by multispectral images and Kjeldahl digestion, APTS-labeled complex type free oligosaccharides are identified by their glucose unit (GU) values in tomato xylem sap, using capillary electrophoresis with laser induced fluorescence detection (CE-LIF). Given the limited number of structures obtained from plants, archived in the literature, in the future, it is intended to create an open access database of promising indicators, namely, glycan structures that are presumably responsible for the nutrient deficiency caused stress in plants (http://glycoplants.org).

Determination of field capacity in the Chibunga and Guano rivers micro-basins.

Background: The micro-basins of the Chibunga and Guano rivers are located within the sub-basin of the Chambo River, which starts at the thaw of the Chimborazo, crosses the cities of Guano and Riobamba, and ends in the Chambo River. These rivers are considered fluvial hydrological forces and geological limits of the aquifer, located in this sub-basin. For this reason, our investigation addressed the field capacity in the micro-basins of Chibunga and Guano rivers, to determine the maximum retention potential, i.e., the saturation of water in the soil. Methods: We investigated the change of precipitation to runoff through the correlations between the characteristics of the soil and its vegetation. We applied the Curve Number (CN) method introduced by the United States Soil Conservation Service (USSCS); this represents an empirical model, which relates the vegetation cover to the geological and topographic conditions of the soil. Along with the geographic information system, the model allows to represent the variation of runoffs for each micro-basin, according to the different land use categories, over the time frame from 2010 to 2014. Results: We found that the maximum retention potential is directly affected by CN values, representing the runoff potential. Highest values of 100 belong to the wetlands, urban area, snow, and water, as rain is converted directly into runoff, being impervious areas. The Guano river micro-basin possesses clay soil with CN of 78, the soil texture for eucalyptus forest is clay loam, and its CN value, 46, is the lowest of the data set. Knowledge of field capacity allows to properly evaluate the storage capacity of soil and water conservation. Conclusions: Results of this work will be useful in the quantification of the water balance, to determine the water supply and demand.

Differences in total iron content at various altitudes of Amazonian Andes soil in Ecuador.

Although iron is not contained by chlorophyll, it is indispensable for plants as it plays an essential role in the biosynthesis of chlorophyll. It is a component of many important plant enzyme systems, e.g. cytochrome oxidase, which is responsible for electron transport. Therefore, examining iron content of soils, particularly ionic forms of iron (Fe 2+ and Fe 3+) is important for fruit growers. In this article, we disclose the total iron content determined in soils (Hyperalic Alisol soil) at three altitudes of Amazonian rainforest in Ecuador. We examine how different altitudes impact the pH and total iron content in the selected study area. We found that total iron content significantly decreases (R2=0.966) at lower altitudes. For future studies, the authors recommend that along with Fe ion content one should determine calcium, microbial biomass, and microbial activity to better understand iron mobility and dynamics of iron uptake in the area.

Radiocarbon dating of two old African baobabs from India.

The article presents the radiocarbon investigation of the baobab of Jhunsi, Allahabad and the Parijaat tree at Kintoor, two old African baobabs from northern India. Several wood samples extracted from these baobabs were analysed by using AMS radiocarbon dating. The radiocarbon date of the oldest samples were 779 ± 41 BP for the baobab of Jhunsi and 793 ± 37 BP for the baobab of Kintoor. The corresponding calibrated ages are 770 ± 25 and 775 ± 25 calendar years. These values indicate that both trees are around 800 years old and become the oldest dated African baobabs outside Africa.

Effect of herbicides on soil respiration: a case study conducted at Debrecen-Látókép Plant Cultivation Experimental Station.

Measuring the effect of herbicides on the natural environment is essential to secure sustainable agriculture practices. Amount of carbon dioxide released by soil microorganisms (soil respiration) is one of the most important soil health indicators, known so far. In this paper we present a comprehensive quantifying study, in which we measured the effect of 14 herbicides on soil respiration over 16 years, from 1991 to 2017, at Debrecen-Látókép Plant Cultivation Experimental Station. Investigated herbicides contained different active ingredients and were applied in various doses. It was found that 11 out of the examined 14 herbicides had a detrimental effect on soil respiration.

Author Correction: The demise of the largest and oldest African baobabs.

In Supplementary Table 1 originally published with this Brief Communication, the authors gave an incorrect GPS easterly coordinate for tree number 12 (Makulu Makete Big baobab); the coordinate '2° 34.584' S, 25° 52.261' E' should have read '22° 34.584' S, 28° 52.261' E'. This has now been amended in the online Supplementary Information file for this Brief Communication.

The demise of the largest and oldest African baobabs.

The African baobab is the biggest and longest-living angiosperm tree. By using radiocarbon dating we identified the stable architectures that enable baobabs to reach large sizes and great ages. We report that 9 of the 13 oldest and 5 of the 6 largest individuals have died, or at least their oldest parts/stems have collapsed and died, over the past 12 years; the cause of the mortalities is still unclear.

Harnessing microbially generated power on the seafloor.

In many marine environments, a voltage gradient exists across the water sediment interface resulting from sedimentary microbial activity. Here we show that a fuel cell consisting of an anode embedded in marine sediment and a cathode in overlying seawater can use this voltage gradient to generate electrical power in situ. Fuel cells of this design generated sustained power in a boat basin carved into a salt marsh near Tuckerton, New Jersey, and in the Yaquina Bay Estuary near Newport, Oregon. Retrieval and analysis of the Tuckerton fuel cell indicates that power generation results from at least two anode reactions: oxidation of sediment sulfide (a by-product of microbial oxidation of sedimentary organic carbon) and oxidation of sedimentary organic carbon catalyzed by microorganisms colonizing the anode. These results demonstrate in real marine environments a new form of power generation that uses an immense, renewable energy reservoir (sedimentary organic carbon) and has near-immediate application.

Radiocarbon dating of a very large African baobab.

In late 2004, Grootboom, probably the largest known African baobab (Adansonia digitata L.), collapsed unexpectedly in northeastern Namibia. Ten wood samples collected from different areas of the trunk were processed and investigated by accelerator mass spectrometry radiocarbon dating. The radiocarbon dates of three samples were greater than 1000 years BP (radiocarbon years before present, i.e., before AD 1950). The corresponding calibrated calendar age of the oldest sample was 1275 +/- 50 years, making Grootboom the oldest known angiosperm tree with reliable dating results. Variations in radiocarbon dates among the wood samples indicated that, morphologically, Grootboom was a quintuple tree, whereas genetically, it was a single individual. Ages of extreme lateral samples revealed that, over the past 500-600 years, Grootbooom had almost ceased growing, providing information about climate changes in central southern Africa. The sudden demise of Grootboom coincided with the spread of the poorly studied baobab disease, which has become epidemic in Namibia.

Harvesting energy from the marine sediment-water interface II. Kinetic activity of anode materials.

Here, we report a comparative study on the kinetic activity of various anodes of a recently described microbial fuel cell consisting of an anode imbedded in marine sediment and a cathode in overlying seawater. Using plain graphite anodes, it was demonstrated that a significant portion of the anodic current results from oxidation of sediment organic matter catalyzed by microorganisms colonizing the anode and capable of directly reducing the anode without added exogenous electron-transfer mediators. Here, graphite anodes incorporating microbial oxidants are evaluated in the laboratory relative to plain graphite with the goal of increasing power density by increasing current density. Anodes evaluated include graphite modified by adsorption of anthraquinone-1,6-disulfonic acid (AQDS) or 1,4-naphthoquinone (NQ), a graphite-ceramic composite containing Mn2+ and Ni2+, and graphite modified with a graphite paste containing Fe3O4 or Fe3O4 and Ni2+. It was found that these anodes possess between 1.5- and 2.2-fold greater kinetic activity than plain graphite. Fuel cells were deployed in a coastal site near Tuckerton, NJ (USA) that utilized two of these anodes. These fuel cells generated ca. 5-fold greater current density than a previously characterized fuel cell equipped with a plain graphite anode, and operated at the same site.

AMS Radiocarbon Dating of Large Za Baobabs (Adansonia za) of Madagascar.

The article reports the radiocarbon investigation of Anzapalivoro, the largest za baobab (Adansonia za) specimen of Madagascar and of another za, namely the Big cistern baobab. Several wood samples collected from the large inner cavity and from the outer part/exterior of the tree were investigated by AMS (accelerator mass spectrometry) radiocarbon dating. For samples collected from the cavity walls, the age values increase with the distance into the wood up to a point of maximum age, after which the values decrease toward the outer part. This anomaly of age sequences indicates that the inner cavity of Anzapalivoro is a false cavity, practically an empty space between several fused stems disposed in a ring-shaped structure. The radiocarbon date of the oldest sample was 780 ± 30 bp, which corresponds to a calibrated age of around 735 yr. Dating results indicate that Anzapalivoro has a closed ring-shaped structure, which consists of 5 fused stems that close a false cavity. The oldest part of the biggest za baobab has a calculated age of 900 years. We also disclose results of the investigation of a second za baobab, the Big cistern baobab, which was hollowed out for water storage. This specimen, which consists of 4 fused stems, was found to be around 260 years old.

African baobabs with false inner cavities: the radiocarbon investigation of the Lebombo Eco Trail baobab.

The article reports the radiocarbon investigation results of the Lebombo Eco Trail tree, a representative African baobab from Mozambique. Several wood samples collected from the large inner cavity and from the outer part of the tree were investigated by AMS radiocarbon dating. According to dating results, the age values of all samples increase from the sampling point with the distance into the wood. For samples collected from the cavity walls, the increase of age values with the distance into the wood (up to a point of maximum age) represents a major anomaly. The only realistic explanation for this anomaly is that such inner cavities are, in fact, natural empty spaces between several fused stems disposed in a ring-shaped structure. We named them false cavities. Several important differences between normal cavities and false cavities are presented. Eventually, we dated other African baobabs with false inner cavities. We found that this new architecture enables baobabs to reach large sizes and old ages. The radiocarbon date of the oldest sample was 1425 ± 24 BP, which corresponds to a calibrated age of 1355 ± 15 yr. The dating results also show that the Lebombo baobab consists of five fused stems, with ages between 900 and 1400 years; these five stems build the complete ring. The ring and the false cavity closed 800-900 years ago. The results also indicate that the stems stopped growing toward the false cavity over the past 500 years.

Searching for the oldest baobab of Madagascar: radiocarbon investigation of large Adansonia rubrostipa trees.

We extended our research on the architecture, growth and age of trees belonging to the genus Adansonia, by starting to investigate large individuals of the most widespread Malagasy species. Our research also intends to identify the oldest baobabs of Madagascar. Here we present results of the radiocarbon investigation of the two most representative Adansonia rubrostipa (fony baobab) specimens, which are located in south-western Madagascar, in the Tsimanampetsotse National Park. We found that the fony baobab called "Grandmother" consists of 3 perfectly fused stems of different ages. The radiocarbon date of the oldest sample was found to be 1136 ± 16 BP. We estimated that the oldest part of this tree, which is mainly hollow, has an age close to 1,600 yr. This value is comparable to the age of the oldest Adansonia digitata (African baobab) specimens. By its age, the Grandmother is a major candidate for the oldest baobab of Madagascar. The second investigated specimen, called the "polygamous baobab", consists of 6 partially fused stems of different ages. According to dating results, this fony baobab is 1,000 yr old. This research is the first investigation of the structure and age of Malagasy baobabs.

Ion-induced discrete charging of immobilized water-soluble gold nanoclusters.

Hydrophilic gold nanoclusters were immobilized onto monolayer-modified gold electrodes and PF6-(-)induced rectification and stepwise capacitance charging was studied in aqueous supporting electrolyte by cyclic voltammetry and ac voltammetry.

The role of 4-hydroxyphenylpyruvate dioxygenase in enhancement of solid-phase electron transfer by Shewanella oneidensis MR-1.

We hypothesized that Shewanella oneidensis MR-1, a model dissimilatory metal-reducing bacterium, could utilize environmentally relevant concentrations of tyrosine to produce pyomelanin for enhanced Fe(III) oxide reduction. Because homogentisate is an intermediate of the tyrosine degradation pathway, and a precursor of a redox-cycling metabolite, pyomelanin, we evaluated the process of homogentisate production by S. oneidensis MR-1, in order to identify the key steps involved in pyomelanin production. We determined that two enzymes involved in this pathway, 4-hydroxyphenylpyruvate dioxygenase and homogentisate 1,2-dioxygenase are responsible for homogentisate production and oxidation, respectively. We used genetic analysis and physiological characterization of MR-1 strains either deficient in or displaying substantially increased pyomelanin production. The relative significance imparted by pyomelanin on solid-phase electron transfer was also addressed using electrochemical techniques, which allowed us to extend the genetic and physiological findings to biogeochemical cycling of metals. Based on our findings, environmental production of pyomelanin from available organic precursors could contribute to the survival of S. oneidensis MR-1 when dissolved oxygen concentrations become low, by providing an increased capacity for solid-phase metal reduction. This study demonstrates the role of organic precursors and their concentrations in pyomelanin production, solid phase metal reduction and biogeochemical cycling of iron.

Nonobatteries: decreasing size power sources for growing technologies.

Increasing need for portable nanoelectronic devices triggers the development of dimensionally small batteries. Nanobatteries are being designed for specific applications, including computer chips, micro-electromechanical systems (such as micro-actuators, micro-instruments, or micro-robots), or nanostructured medical devices. As the size of power source should be commensurate with the device it powers, battery miniaturization is an important design challenge faced by the battery community. Further advantages of such minute batteries include the long shelf life and a quick ramp up to full power. Hence, design may enable the nanobattery to stay dormant for several years, and then getting reactivated, so that it can provide immediately a burst of high energy.

Rapid proton-coupled electron-transfer of hydroquinone through phenylenevinylene bridges.

We describe the synthesis of two oligo(phenylene vinylene)s (OPVs) with a hydroquinone moiety and a thiol anchor group: 4-(2',5'-dihydroxystyryl)benzyl thioacetate and 4-[4'-(2' ',5' '-dihydroxystyryl)styryl]benzyl thioacetate. Monolayers on gold of these molecules were examined by electrochemical techniques to determine the electron transfer kinetics of the hydroquinone functionality (H2Q) through these delocalized tethers ("molecular wires") as a function of pH. Between pH 4 and 9, rate constants were ca. 100-fold faster than for the same H2Q functionality confined to the surface via alkane tethers. Also, in this same pH range rate constants were independent of the length of the OPV bridge. These new electroactive molecules in which the hydroquinone functionality is wired to the gold surface by means of OPV tethers should be useful platforms for constructing bioelectronic devices such as biosensors, biofuel cells, and biophotovoltaic cells with a fast response time.

Electron conduction across electrode-immobilized neutravidin bound with biotin-labeled ruthenium pentaamine.

Voltammetry is reported here of a self-assembled redox-protein conjugate consisting of neutravidin conjugated with a biotin derivative redox probe, Ru(NH3)5(N-[(N-[(4-pyridyl)methyl]biotinamide], immobilized on gold electrodes modified by self-assembled monolayers of mercaptoundecanoic acid. This voltammetry indicates that self-assembly of the conjugate/electrode electronic interface, driven by electrostatic binding between the monolayer and a single redox probe, favors orientation of the conjugate, resulting in electronic accessibility of the remaining three redox probes.