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1.
Neuropsychobiology ; 82(1): 40-50, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36630922

RESUMEN

INTRODUCTION: In our previous study, we successfully constructed the recombinant brain-derived neurotrophic factor (BDNF)-adeno-associated virus (AAV) modified by the influenza virus hemagglutinin-2 (HA2) and trans-transcriptional activator (TAT). BDNF-HA2TAT/AAV has been confirmed to have antidepression effects. BDNF-HA2TAT/AAV seems a promising therapy for post-traumatic stress disorder (PTSD) as the BDNF plays an important role in the function of the nervous system. However, the effects of BDNF-HA2TAT/AAV on PTSD caused by the single prolonged stress (SPS) model are unknown. METHODS: After the SPS model was established, BDNF-HA2TAT/AAV was administered (1 × 1011 vg per rat) through inhalation in the SPS + BDNF group for 2 weeks. Next, the rats underwent behavioral tests including an open-field test (OFT), elevated plus maze (EPM), and a forced swimming test (FST). Sera and hippocampi were obtained from the rats, and an enzyme-linked immune sorbent assay was performed to determine corticosterone concentration. Western blotting was conducted to determine BDNF, tyrosine kinase receptor B (TrkB), cAMP-response element-binding protein, and protein kinase B levels. RESULTS: BDNF-HA2TAT/AAV released anxiety-like and depression-like behaviors in OFT, EPM, and FST. BDNF-HA2TAT/AAV also results in high plasma concentrations of corticosterone, BDNF, and TrkB in the hippocampus. CONCLUSIONS: SPS is an excellent animal model to assess PTSD. BDNF-HA2TAT/AAV therapeutically effects PTSD caused by SPS, with changes seen in plasma corticosterone and BDNF-TrkB pathways within the hippocampus; therefore, BDNF-HA2TAT/AAV may be a promising treatment for patients with PTSD.


Asunto(s)
Trastornos por Estrés Postraumático , Ratas , Animales , Trastornos por Estrés Postraumático/tratamiento farmacológico , Factor Neurotrófico Derivado del Encéfalo/metabolismo , Corticosterona , Ansiedad/metabolismo , Hipocampo/metabolismo , Modelos Animales de Enfermedad
2.
Plant Cell Physiol ; 61(9): 1614-1630, 2020 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-32678905

RESUMEN

The process of cadmium (Cd) accumulation and detoxification under different sulfur levels remains largely unknown in woody plants. To investigate the physiological and transcriptomic regulation mechanisms of poplars in response to different sulfate (S) supply levels and Cd exposure, we exposed Populus deltoides saplings to one of the low, moderate and high S levels together with either 0 or 50 µM Cd. Cd accumulation was decreased in low S-treated poplar leaves, and it tended to be increased in high S-supplied leaves under the Cd exposure condition. Sulfur nutrition was deficient in low S-supplied poplars, and it was improved in high S-treated leaves. Cd exposure resulted in lower sulfur level in the leaves supplied with moderate S, it exacerbated a Cd-induced sulfur decrease in low S-treated leaves and it caused a higher sulfur concentration in high S-supplied leaves. In line with the physiological changes, a number of mRNAs and microRNAs (miRNAs) involved in Cd accumulation and sulfur assimilation were identified and the miRNA-mRNA networks were dissected. In the networks, miR395 and miR399 members were identified as hub miRNAs and their targets were ATP sulfurylase 3 (ATPS3) and phosphate 2 (PHO2), respectively. These results suggest that Cd accumulation and sulfur assimilation are constrained by low and enhanced by high S supply, and Cd toxicity is aggravated by low and relieved by high S in poplar leaves, and that miRNA-mRNA regulatory networks play pivotal roles in sulfur-mediated Cd accumulation and detoxification in Cd-exposed poplars.


Asunto(s)
Cadmio/metabolismo , MicroARNs/fisiología , Hojas de la Planta/metabolismo , Populus/metabolismo , ARN Mensajero/fisiología , ARN de Planta/fisiología , Azufre/metabolismo , Regulación de la Expresión Génica de las Plantas/genética , Redes Reguladoras de Genes/genética , Redes Reguladoras de Genes/fisiología , MicroARNs/metabolismo , Populus/genética , ARN Mensajero/metabolismo , ARN de Planta/metabolismo
3.
J Clin Microbiol ; 58(8)2020 Jul 23.
Artículo en Inglés | MEDLINE | ID: mdl-32467359

RESUMEN

The outbreak of coronavirus disease 2019 (COVID-19) has spread across the world and was characterized as a pandemic. To protect medical laboratory personnel from infection, most laboratories inactivate the virus causing COVID-19, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), in clinical samples before testing. However, the effect of inactivation on the detection results remains unknown. Here, we used a digital PCR assay to determine the absolute SARS-CoV-2 RNA copy number in 63 nasopharyngeal swab samples and assess the effect of inactivation methods on viral RNA copy number. Viral inactivation was performed by three different methods: (i) incubation with the TRIzol LS reagent for 10 min at room temperature, (ii) heating in a water bath at 56°C for 30 min, and (iii) high-temperature treatment, including autoclaving at 121°C for 20 min, boiling at 100°C for 20 min, and heating at 80°C for 20 min. Compared to the amount of RNA in the original sample, TRIzol treatment destroyed 47.54% of the nucleocapsid protein (N) gene and 39.85% of open reading frame (ORF) 1ab. For samples treated at 56°C for 30 min, the copy number of the N gene and ORF 1ab was reduced by 48.55% and 56.40%, respectively. The viral RNA copy number dropped by 50 to 66% after heating at 80°C for 20 min. Nearly no viral RNA was detected after autoclaving at 121°C or boiling at 100°C for 20 min. These results indicate that inactivation reduced the quantity of detectable viral RNA and may cause false-negative results, especially in weakly positive cases. Thus, use of the TRIzol reagent rather than heat inactivation is recommended for sample inactivation, as the TRIzol reagent had the least effect on the RNA copy number among the tested methods.


Asunto(s)
Betacoronavirus/efectos de los fármacos , Betacoronavirus/efectos de la radiación , Desinfección/métodos , ARN Viral/análisis , Manejo de Especímenes/métodos , Inactivación de Virus/efectos de los fármacos , Inactivación de Virus/efectos de la radiación , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Desinfectantes , Femenino , Dosificación de Gen , Calor , Humanos , Masculino , Persona de Mediana Edad , Reacción en Cadena de la Polimerasa , ARN Viral/genética , SARS-CoV-2 , Adulto Joven
4.
Proc Natl Acad Sci U S A ; 114(30): 8041-8046, 2017 07 25.
Artículo en Inglés | MEDLINE | ID: mdl-28696305

RESUMEN

Hantavirus, a rodent-borne zoonotic pathogen, has a global distribution with 200,000 human infections diagnosed annually. In recent decades, repeated outbreaks of hantavirus infections have been reported in Eurasia and America. These outbreaks have led to public concern and an interest in understanding the underlying biological mechanisms. Here, we propose a climate-animal-Hantaan virus (HTNV) infection model to address this issue, using a unique dataset spanning a 54-y period (1960-2013). This dataset comes from Central China, a focal point for natural HTNV infection, and includes both field surveillance and an epidemiological record. We reveal that the 8-y cycle of HTNV outbreaks is driven by the confluence of the cyclic dynamics of striped field mouse (Apodemus agrarius) populations and climate variability, at both seasonal and interannual cycles. Two climatic variables play key roles in the ecology of the HTNV system: temperature and rainfall. These variables account for the dynamics in the host reservoir system and markedly affect both the rate of transmission and the potential risk of outbreaks. Our results suggest that outbreaks of HTNV infection occur only when climatic conditions are favorable for both rodent population growth and virus transmission. These findings improve our understanding of how climate drives the periodic reemergence of zoonotic disease outbreaks over long timescales.


Asunto(s)
Clima , Infecciones por Hantavirus/epidemiología , Interacciones Huésped-Patógeno , Modelos Teóricos , Orthohantavirus/fisiología , Roedores/virología , Animales , China/epidemiología , Reservorios de Enfermedades , Vectores de Enfermedades , Humanos , Incidencia , Densidad de Población , Lluvia , Estaciones del Año , Temperatura
5.
PLoS Pathog ; 13(1): e1006198, 2017 01.
Artículo en Inglés | MEDLINE | ID: mdl-28141833

RESUMEN

Zoonoses are increasingly recognized as an important burden on global public health in the 21st century. High-resolution, long-term field studies are critical for assessing both the baseline and future risk scenarios in a world of rapid changes. We have used a three-decade-long field study on hantavirus, a rodent-borne zoonotic pathogen distributed worldwide, coupled with epidemiological data from an endemic area of China, and show that the shift in the ecological dynamics of Hantaan virus was closely linked to environmental fluctuations at the human-wildlife interface. We reveal that environmental forcing, especially rainfall and resource availability, exert important cascading effects on intra-annual variability in the wildlife reservoir dynamics, leading to epidemics that shift between stable and chaotic regimes. Our models demonstrate that bimodal seasonal epidemics result from a powerful seasonality in transmission, generated from interlocking cycles of agricultural phenology and rodent behavior driven by the rainy seasons.


Asunto(s)
Virus Hantaan/fisiología , Fiebre Hemorrágica con Síndrome Renal/epidemiología , Interacciones Huésped-Patógeno , Zoonosis/epidemiología , Animales , Teorema de Bayes , China/epidemiología , Ecología , Ambiente , Femenino , Geografía , Fiebre Hemorrágica con Síndrome Renal/transmisión , Fiebre Hemorrágica con Síndrome Renal/virología , Humanos , Filogenia , Embarazo , Lluvia , Riesgo , Roedores , Estaciones del Año , Zoonosis/virología
6.
Emerg Infect Dis ; 24(6): 1095-1098, 2018 06.
Artículo en Inglés | MEDLINE | ID: mdl-29619922

RESUMEN

We report infection of humans with highly pathogenic avian influenza A(H7N9) virus in Shaanxi, China, in May 2017. We obtained complete genomes for samples from 5 patients and from live poultry markets or farms in 4 cities. Results indicate that H7N9 is spreading westward from southern and eastern China.


Asunto(s)
Subtipo H7N9 del Virus de la Influenza A , Gripe Humana/epidemiología , Gripe Humana/virología , Animales , China/epidemiología , Genes Virales , Humanos , Subtipo H7N9 del Virus de la Influenza A/patogenicidad , Gripe Humana/transmisión , Filogenia , ARN Viral
7.
J Water Health ; 16(4): 508-515, 2018 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-30067234

RESUMEN

An acute gastroenteritis outbreak occurred at a private college in June 2014 in northwest China. This outbreak involved two teachers and 629 students (range: 17-27 years, average 21.3 years). The main symptoms included non-bloody watery diarrhea, stomach ache, nausea, and vomiting, and the duration of illness ranged from 1 to 7 days. Eight of 18 water samples were disqualified. Thirty-four norovirus (NoV) RNA-positive samples were identified from 48 stool-related samples (genotyping results: 13 GII, 13 GI and 8 GI + GII mixture). Fourteen NoV samples were successfully characterized for genotype, including two GII.6, five GI.6, four GI.3, and three GI.1. Enteropathogenic Escherichia coli (EPEC) and enteroadherent Escherichia coli (EAEC) DNA was detected from patient stool specimens and water samples from well one; two EAEC strains and one EPEC strain were isolated from patient stool specimens. The risk ratios (RRs) associated with wells one and two were 1.66 and 1.49, respectively, and the RR associated with living in north dormitory building one was 2.59. The patients' epidemiological characteristics, symptoms, and duration of illness indicated that NoV-contaminated water might be the origin of this outbreak, and RR analysis suggested that the two wells were linked to the outbreak.


Asunto(s)
Infecciones por Caliciviridae/virología , Agua Potable/virología , Gastroenteritis/virología , Norovirus/aislamiento & purificación , Adolescente , Adulto , Infecciones por Caliciviridae/epidemiología , China/epidemiología , Diarrea/epidemiología , Brotes de Enfermedades , Heces/virología , Femenino , Gastroenteritis/epidemiología , Humanos , Masculino , Norovirus/genética , Filogenia , Factores de Tiempo , Pozos de Agua , Adulto Joven
8.
J Med Virol ; 89(9): 1511-1519, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28112421

RESUMEN

To explore the epidemiological, phylogeographic, and migration characteristics of human rabies in Shaanxi province, China from 2009 to 2015. The collected data were described and the sequenced glycoprotein (G) and nucleoprotein (N) genes were implemented to estimate the evolutionary rates and phylogeographic patterns using BEAST v.1.8.2. A total of 269 rabies cases were reported and 70.26% of the cases were male and 61.71% were between the ages of 19-59. The majority of the cases were farmers (83.27%). The estimated evolutionary rate of the N genes was 2.4 × 10-4 substitutions/site/year and the G genes was 3.4 × 10-4 . The time of the most recent common ancestor (TMRCA) was estimated around 1990. We detected viral migration paths from Sichuan, Guizhou, and Hunan to Hanzhong prefecture of Shaanxi and then spreaded to Xi'an and other prefectures. The main population affected by rabies virus was male adult farmers. The evolution rate of rabies viruses in Shaanxi was similar with the prior results reported by others and the ancestor virus should be circulating in neighboring province Sichuan around 1990 and then transmitted to Shaanxi. Promptly standard wound treatment and timely post-exposure prophylaxis should be compulsory for the dog-bitten victims.


Asunto(s)
Enfermedades Transmisibles Emergentes/epidemiología , Enfermedades Transmisibles Emergentes/virología , Filogeografía , Virus de la Rabia/clasificación , Rabia/epidemiología , Rabia/virología , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Animales , Antígenos Virales/genética , Niño , Preescolar , China/epidemiología , Perros , Evolución Molecular , Femenino , Glicoproteínas/genética , Humanos , Lactante , Masculino , Persona de Mediana Edad , Tasa de Mutación , Proteínas de la Nucleocápside/genética , Exposición Profesional , Virus de la Rabia/genética , Virus de la Rabia/aislamiento & purificación , Análisis de Secuencia de ADN , Proteínas del Envoltorio Viral/genética , Adulto Joven
9.
J Ayub Med Coll Abbottabad ; 29(1): 3-7, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28712163

RESUMEN

BACKGROUND: Tobacco Smoking, most commonly, can cause the diseases affecting the lungs and heart. Human gut microbiota plays a key role to decide the health status of the host. Current study aimed to characterize the gut microbiota of healthy Chinese tobacco smokers and to study the alteration in diversity and similarity of gut microbiota, with comparison of healthy non-smokers. METHODS: Fecal samples were collected from fourteen healthy tobacco smokers and six from healthy non-smoker individuals. PCR-denaturing gradient gel electrophoresis, with universal primers focusing V3 region of the 16S rRNA gene, was done to characterize the overall gut microbial composition of healthy tobacco smokers in comparison with healthy non-smoker subjects and some strongly dominant gel bands were excised for sequencing. Real time PCR was also performed to evaluate the copy numbers of some dominant bacteria of intestinal flora. RESULTS: The results indicated that gut microbial diversity in tobacco smoker group was lower than non-smoker controls. Furthermore, similarity index comparison also indicated that it was lower in inter-group than intra-group, which showed that gut microbial composition was changed in tobacco smoker group. Sequencing results also indicated a change in bacterial composition between both groups. We also observed that in tobacco smoker group, there was a significant reduction in Bifidobacterium and non-significant increase in Bacteroides vulgatus, while nonsignificant decrease in Lactobacillus and clostridium leptum sub group, respectively. CONCLUSIONS: It can be concluded that in healthy Chinese tobacco smoker group, there is a notable alteration in the molecular characterization of gut microbiota.


Asunto(s)
Bacterias/genética , Heces/microbiología , Microbioma Gastrointestinal/genética , Fumadores/estadística & datos numéricos , Bacterias/clasificación , Estudios de Casos y Controles , China , Humanos , Reacción en Cadena en Tiempo Real de la Polimerasa
10.
BMC Infect Dis ; 16(1): 542, 2016 Oct 07.
Artículo en Inglés | MEDLINE | ID: mdl-27717328

RESUMEN

BACKGROUND: In 2010, a universal nomenclature for varicella-zoster virus (VZV) clades was established, which is very useful in the monitoring of viral evolution, recombination, spread and genetic diversity. Currently, information about VZV clades has been disclosed worldwide, however, there are limited data regarding the characterization of circulating VZV clades in China, even where varicella remains widely epidemic. METHODS: From 2008 to 2012, clinical samples with varicella or zoster were collected in General Hospital in eight provinces and analyzed by PCR, restriction endonuclease digestion and sequencing. The viral clades were determined by analysis of five single nucleotide polymorphisms (SNPs) within the 447-bp fragment of open reading frame (ORF) 22, and the restriction fragment length polymorphisms (RFLPs) of ORF 38 (PstI), ORF 54 (BglI) and ORF 62 (SmaI) were evaluated to understand genetic diversity of VZV and determinate varicella vaccine adverse event (VVAE). RESULTS: Seventy-seven varicella and 11 zoster samples were identified as being positive for VZV. The five SNPs profile showed that the majority of VZV strains belonged to clade 2, but clade 5 and clade 4 strains were also found in Guangdong. The RFLPs analysis of the DNA fragments of ORF 38, 54 and 62 showed that 85 of these samples were characterized as PstI + BglI + SamI-, and the remaining three VZV strains from varicella patients were characterized as PstI-BglI + SamI+ which is the genetic profile of VVAEs. CONCLUSIONS: The study suggested that the predominant clade 2 VZVs had been continually circulating since at least the 1950s in China. Nearly all VZV strains except VVAEs possessed the genetic profile of PstI + BglI + Sam-. However, the other clades were also found to be co-circulating with clade 2, especially in the border regions. These results highlighted the need for the constant and broad use of virologic surveillance to provide an important genetic baseline for varicella control and vaccination programs in China.


Asunto(s)
Herpesvirus Humano 3/genética , Adolescente , Adulto , Anciano , Evolución Biológica , Varicela/epidemiología , Varicela/virología , Vacuna contra la Varicela/genética , Niño , Preescolar , China/epidemiología , Genotipo , Herpes Zóster/epidemiología , Herpes Zóster/virología , Herpesvirus Humano 3/aislamiento & purificación , Hospitales Generales , Humanos , Persona de Mediana Edad , Sistemas de Lectura Abierta , Reacción en Cadena de la Polimerasa , Polimorfismo de Longitud del Fragmento de Restricción , Polimorfismo de Nucleótido Simple , Adulto Joven
11.
J Clin Microbiol ; 53(11): 3418-22, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26224847

RESUMEN

Resistance of Bordetella pertussis to erythromycin has been increasingly reported. We developed an allele-specific PCR method for rapid detection of erythromycin-resistant B. pertussis directly from nasopharyngeal (NP) swab samples submitted for diagnostic PCR. Based on the proven association of erythromycin resistance with the A2047G mutation in the 23S rRNA of B. pertussis, four primers, two of which were designed to be specific for either the wild-type or the mutant allele, were used in two different versions of the allele-specific PCR assay. The methods were verified with results obtained by PCR-based sequencing of 16 recent B. pertussis isolates and 100 NP swab samples submitted for diagnostic PCR. The detection limits of the two PCR assays ranged from 10 to 100 fg per reaction for both erythromycin-susceptible and -resistant B. pertussis. Two amplified fragments of each PCR, of 286 and 112 bp, respectively, were obtained from a mutant allele of the isolates and/or NP swab samples containing B. pertussis DNAs. For the wild-type allele, only a 286-bp fragment was visible when the allele-specific PCR assay 1 was performed. No amplification was found when a number of non-Bordetella bacterial pathogens and NP swab samples that did not contain the DNAs of B. pertussis were examined. This assay can serve as an alternative for PCR-based sequencing, especially for local laboratories in resource-poor countries.


Asunto(s)
Antibacterianos/uso terapéutico , Bordetella pertussis/efectos de los fármacos , Farmacorresistencia Bacteriana/genética , Eritromicina/uso terapéutico , Reacción en Cadena de la Polimerasa/métodos , ARN Ribosómico 23S/genética , Secuencia de Bases , Bordetella pertussis/genética , Bordetella pertussis/aislamiento & purificación , ADN Bacteriano/genética , Humanos , Nasofaringe/microbiología , Análisis de Secuencia de ADN , Tos Ferina/tratamiento farmacológico , Tos Ferina/microbiología
12.
New Phytol ; 205(1): 240-54, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25229726

RESUMEN

Overexpression of bacterial γ-glutamylcysteine synthetase in the cytosol of Populus tremula × P. alba produces higher glutathione (GSH) concentrations in leaves, thereby indicating the potential for cadmium (Cd) phytoremediation. However, the net Cd(2+) influx in association with H(+) /Ca(2+) , Cd tolerance, and the underlying molecular and physiological mechanisms are uncharacterized in these poplars. We assessed net Cd(2+) influx, Cd tolerance and the transcriptional regulation of several genes involved in Cd(2+) transport and detoxification in wild-type and transgenic poplars. Poplars exhibited highest net Cd(2+) influxes into roots at pH 5.5 and 0.1 mM Ca(2+) . Transgenics had higher Cd(2+) uptake rates and elevated transcript levels of several genes involved in Cd(2+) transport and detoxification compared with wild-type poplars. Transgenics exhibited greater Cd accumulation in the aerial parts than wild-type plants in response to Cd(2+) exposure. Moreover, transgenic poplars had lower concentrations of O2 ˙(-) and H2 O2 ; higher concentrations of total thiols, GSH and oxidized GSH in roots and/or leaves; and stimulated foliar GSH reductase activity compared with wild-type plants. These results indicate that transgenics are more tolerant of 100 µM Cd(2+) than wild-type plants, probably due to the GSH-mediated induction of the transcription of genes involved in Cd(2+) transport and detoxification.


Asunto(s)
Cadmio/metabolismo , Dipéptidos/metabolismo , Escherichia coli/enzimología , Populus/genética , Populus/metabolismo , Antioxidantes/metabolismo , Transporte Biológico , Calcio/metabolismo , Metabolismo de los Hidratos de Carbono/genética , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Hidrógeno/metabolismo , Inactivación Metabólica , Modelos Biológicos , Corteza de la Planta/metabolismo , Hojas de la Planta/metabolismo , Raíces de Plantas/metabolismo , Plantas Modificadas Genéticamente , Populus/crecimiento & desarrollo , Análisis de Componente Principal , ARN Mensajero/genética , ARN Mensajero/metabolismo , Especies Reactivas de Oxígeno/metabolismo , Compuestos de Sulfhidrilo/metabolismo , Superóxidos/metabolismo , Madera/metabolismo
13.
Virol J ; 12: 56, 2015 Apr 10.
Artículo en Inglés | MEDLINE | ID: mdl-25889836

RESUMEN

BACKGROUND: Enterovirus 71 (EV71) is one of the major etiological pathogens of hand, foot and mouth disease (HFMD) and can cause severe cerebral and pulmonary complications and even fatality. MicroRNAs (miRNAs), a class of small non-coding RNA molecules, play an important role in post-transcriptional regulation of gene expression and thereby influencing various physiological and pathological processes. Increasing evidence suggests that miRNAs act as key effector molecules in the complicated pathogen-host interactions. However, the roles of miRNAs in EV71 infection and pathogenesis are not well understood. METHODS: To identify special miRNAs involved in EV71 infection, a microarray assay was performed to study the expression pattern of miRNAs in EV71-infected human rhabdomyosarcoma cells (RD cells) and uninfected RD cells. We further predicted the putative target genes for the dysregulated miRNAs using the online bioinformatic algorithms (TargetScan, miRanda and PicTar) and carried out functional annotation including GO enrichment and KEGG pathway analysis for miRNA predicted targets. Then, the results of microarray were further confirmed by quantitative RT-PCR. RESULTS: Totally, 45 differentially expressed miRNAs ware identified by microarray, among which 36 miRNAs were up-regulated and 9 were down-regulated. 7166 predicted target genes for the dysregulated miRNAs were revealed by using TargetScan in conjunction with miRanda and PicTar. The GO annotation suggested that predicted targets of miRNAs were enriched into the category of signal transduction, regulation of transcription, metabolic process, protein phosphorylation, apoptotic process and immune response. KEGG pathway analysis suggested that these predicted target genes were involved in many important pathways, mainly including endocytosis and focal adhesion, MAPK signaling pathway, hypertrophic cardiomyopathy, melanogenesis and ErbB signaling pathway. The expression levels of 8 most differentially up-regulated miRNAs and 3 most differentially down-regulated miRNAs were confirmed by qRT-PCR. The expressions of hsa-miR-4530, hsa-miR-4492, hsa-miR-6125, hsa-miR-494-3p, hsa-miR-638, hsa-miR-6743-5p, hsa-miR-4459 and hsa-miR-4443 detected by qRT-PCR were consistent with the microarray data. CONCLUSION: These results might extend our understanding to the regulatory mechanism of miRNAs underlying the pathogenesis of EV71 infection, thus strengthening the preventative and therapeutic strategies of HFMD caused by EV71.


Asunto(s)
Enterovirus Humano A/crecimiento & desarrollo , Interacciones Huésped-Patógeno , MicroARNs/biosíntesis , Línea Celular Tumoral , Biología Computacional , Perfilación de la Expresión Génica , Humanos , MicroARNs/genética , Análisis por Micromatrices , Reacción en Cadena en Tiempo Real de la Polimerasa
14.
Plant Physiol ; 162(1): 424-39, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23530184

RESUMEN

Bark tissue of Populus × canescens can hyperaccumulate cadmium, but microstructural, transcriptomic, and physiological response mechanisms are poorly understood. Histochemical assays, transmission electron microscopic observations, energy-dispersive x-ray microanalysis, and transcriptomic and physiological analyses have been performed to enhance our understanding of cadmium accumulation and detoxification in P. × canescens. Cadmium was allocated to the phloem of the bark, and subcellular cadmium compartmentalization occurred mainly in vacuoles of phloem cells. Transcripts involved in microstructural alteration, changes in nutrition and primary metabolism, and stimulation of stress responses showed significantly differential expression in the bark of P. × canescens exposed to cadmium. About 48% of the differentially regulated transcripts formed a coregulation network in which 43 hub genes played a central role both in cross talk among distinct biological processes and in coordinating the transcriptomic regulation in the bark of P. × canescens in response to cadmium. The cadmium transcriptome in the bark of P. × canescens was mirrored by physiological readouts. Cadmium accumulation led to decreased total nitrogen, phosphorus, and calcium and increased sulfur in the bark. Cadmium inhibited photosynthesis, resulting in decreased carbohydrate levels. Cadmium induced oxidative stress and antioxidants, including free proline, soluble phenolics, ascorbate, and thiol compounds. These results suggest that orchestrated microstructural, transcriptomic, and physiological regulation may sustain cadmium hyperaccumulation in P. × canescens bark and provide new insights into engineering woody plants for phytoremediation.


Asunto(s)
Cadmio/metabolismo , Corteza de la Planta/genética , Proteínas de Plantas/genética , Populus/genética , Transcriptoma , Adaptación Fisiológica , Antioxidantes/metabolismo , Cadmio/análisis , Cadmio/farmacología , Metabolismo de los Hidratos de Carbono , Microanálisis por Sonda Electrónica , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Homeostasis , Nitrógeno/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos , Especificidad de Órganos , Estrés Oxidativo , Fenoles/metabolismo , Fotosíntesis/efectos de los fármacos , Corteza de la Planta/efectos de los fármacos , Corteza de la Planta/fisiología , Corteza de la Planta/ultraestructura , Hojas de la Planta/efectos de los fármacos , Hojas de la Planta/genética , Hojas de la Planta/fisiología , Hojas de la Planta/ultraestructura , Proteínas de Plantas/metabolismo , Raíces de Plantas/efectos de los fármacos , Raíces de Plantas/genética , Raíces de Plantas/fisiología , Raíces de Plantas/ultraestructura , Populus/efectos de los fármacos , Populus/fisiología , Populus/ultraestructura , ARN Mensajero/genética , ARN de Planta/genética , Estrés Fisiológico , Azufre/metabolismo
15.
Plant Cell Environ ; 37(3): 627-42, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23937227

RESUMEN

Ectomycorrhizas (EMs), which are symbiotic organs formed between tree roots and certain fungi, can mediate cadmium (Cd) tolerance of host plants, but the underlying physiological and molecular mechanisms are not fully understood. To investigate EMs mediated Cd tolerance in woody plants, Populus × canescens was inoculated with Paxillus involutus (strain MAJ) to establish mycorrhizal roots. Mycorrhizal poplars and non-mycorrhizal controls were exposed to 0 or 50 µM CdSO4 . EMs displayed higher net Cd(2+) influx than non-mycorrhizal roots. Net Cd(2+) influx was coupled with net H(+) efflux and inactivation of plasma membrane (PM) H(+) -ATPases reduced Cd(2+) uptake of EMs less than of non-mycorrhizal roots. Consistent with higher Cd(2+) uptake in EMs, in most cases, transcript levels of genes involved in Cd(2+) uptake, transport and detoxification processes were increased in EMs compared to non-mycorrhizal roots. Higher CO2 assimilation, improved nutrient and carbohydrate status, and alleviated oxidative stress were found in mycorrhizal compared to non-mycorrhizal poplars despite higher Cd(2+) accumulation. These results indicate that mycorrhizas increase Cd(2+) uptake, probably by an enlarged root volume and overexpression of genes involved in Cd(2+) uptake and transport, and concurrently enhance Po. × canescens Cd tolerance by increased detoxification, improved nutrient and carbohydrate status and defence preparedness.


Asunto(s)
Adaptación Fisiológica , Basidiomycota/fisiología , Cadmio/metabolismo , Micorrizas/fisiología , Populus/metabolismo , Populus/microbiología , Adaptación Fisiológica/genética , Transporte Biológico/genética , Metabolismo de los Hidratos de Carbono/genética , Regulación de la Expresión Génica de las Plantas , Genes de Plantas/genética , Glutatión/metabolismo , Peróxido de Hidrógeno/metabolismo , Inactivación Metabólica , Malondialdehído/metabolismo , Meristema/microbiología , Modelos Biológicos , Estrés Oxidativo/genética , Corteza de la Planta/metabolismo , Hojas de la Planta/metabolismo , Populus/genética , Populus/crecimiento & desarrollo , Análisis de Componente Principal , Prolina/metabolismo , Protones , ARN Mensajero/genética , ARN Mensajero/metabolismo , Espectroscopía Infrarroja por Transformada de Fourier , Compuestos de Sulfhidrilo/metabolismo , Superóxidos/metabolismo , Madera/metabolismo
16.
Microb Ecol ; 67(3): 679-89, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24402361

RESUMEN

Systemic inflammation contributes to both the development of cancer and of cachexia. The microenvironment of bacterial habitats might be changed during the progression of cancer cachexia. The aim of this study was to quantitatively and qualitatively compare the composition of the skin microbiota between cancer cachexia patients and healthy volunteers. Cutaneous bacteria were swabbed at the axillary fossa of 70 cancer cachexia patients and 34 healthy individuals from China. Nested-PCR-denaturing gradient gel electrophoresis (PCR-DGGE) with primers specifically targeting V3 region and quantitative PCR (qPCR) for total bacteria, Corynebacterium spp., Staphylococcus spp., and Staphylococcus epidermidis were performed on all samples. Barcoded 454 pyrosequencing of the V3-V4 regions was performed on 30 randomly selected samples. By comparing diversity and richness indices, we found that the skin microbiome of cachectic cancer patients is less diverse than that of healthy participants, though these differences were not significant. The main microbes that reside on human skin were divided into four phyla: Firmicutes, Actinobacteria, Proteobacteria, and Bacteroidetes. Staphylococcus spp. and Corynebacterium spp. were the dominant bacteria at the genus level. Significantly fewer Corynebacterium spp. had been observed in cachexia patients compared to healthy subjects. These results suggest that the presence of cancer and cachexia alters human skin bacterial communities. Understanding the changes in microbiota during cancer cachexia may lead to new insights into the syndrome.


Asunto(s)
Bacterias/genética , Caquexia/microbiología , Neoplasias/microbiología , Piel/microbiología , Adulto , Anciano , Anciano de 80 o más Años , Bacterias/clasificación , Bacterias/aislamiento & purificación , Caquexia/etiología , China , ADN Bacteriano/genética , Electroforesis en Gel de Gradiente Desnaturalizante , Femenino , Humanos , Masculino , Metagenoma/genética , Persona de Mediana Edad , Datos de Secuencia Molecular , Neoplasias/etiología , Filogenia , Reacción en Cadena de la Polimerasa , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
17.
Ecotoxicol Environ Saf ; 108: 281-6, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25105488

RESUMEN

The aim of this study was to examine the microbiological and related parameters (antibiotic resistance and pathogen identification) of water at two salmonid fish farms in Northern Ireland. Total Bacterial Counts at the Movanagher Fish Farm was 1730 colony forming units (cfu)/ml water (log10 3.24cfu/ml) and 3260cfu/ml (log10 3.51cfu/ml) at the Bushmills Salmon Station. Examination of resulting organisms revealed 10 morphological phenotypes, which were subsequently sequenced to determine their identification. All these organisms were Gram-negative and no Gram-positive organisms were isolated from any water sample. From these phenotypes, eight different genera were identified including Acinetobacter, Aeromonas, Chryseobacterium, Erwinia, Flavobacterium, Pseudomonas and Rheinheimera. One unnamed novel taxon was identified from water at the Movanagher Fish Farm, belonging to the genus Acinetobacter and has been tentatively named Acinetobacter movanagherensis. No other novel taxa were observed. All but one of these environmental organisms (Erwinia) are potential pathogens of fish disease. Total antibiotic resistance was observed to varying degrees in water specimens. The most resistant populations were observed in water taken from the Bushmills Salmon Station inlet, followed by water from the Movanagher Fish Farm. No resistance was observed against tetracycline and there was only one occurrence of resistance against ciprofloxacin. Overall, this study indicates that potential fish pathogens made up the majority of environmental organisms identified, even in the absence of recorded fish disease. There was also relatively high levels of total antibiotic resistance in the bacterial water populations examined, where tetracycline was the only antibiotic with zero resistance. These data indicate that the threat of bacterial disease is relatively close due to the indigenous colonization of farm water and that husbandry standards should be maintained at a high standard to avert bacterial disease outbreaks, rather than relying on the absence of specific pathogens in the immediate farm environment.


Asunto(s)
Acuicultura , ADN Bacteriano/química , Farmacorresistencia Bacteriana , Estanques/microbiología , Microbiología del Agua , Animales , Antibacterianos , ADN Ribosómico/química , Pruebas de Sensibilidad Microbiana , Oncorhynchus mykiss , Reacción en Cadena de la Polimerasa , Pseudomonas/aislamiento & purificación , Salmo salar
18.
Microbiol Immunol ; 57(8): 553-60, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23734976

RESUMEN

Outbreaks of ARD associated with HAdV have been reported in military populations in many countries. Here, we report an ARD outbreak caused by HAdV-7 in a military training camp in Shaanxi Province, China, from February to March of 2012. Epidemic data and samples from the patients were collected, and viral nucleotides from samples and viral isolations were detected and sequenced. IgG and IgA antibodies against HAdV, and the neutralization antibodies against the viral strain isolated in this outbreak, were detected. Epidemiological study showed that all personnel affected were males with an average age of 19.1 years. Two peaks appeared on the epicurve and there was an 8-day interval between peaks. Laboratory results of viral nucleotide detection carried out with clinical specimens were positive for HAdV (83.33%, 15/18). Further study through serum antibody assay, virus isolation and phylogenetic analysis showed that HAdV-7 was the etiological agent responsible for the outbreak. IgA antibody began to appear on the 4th day after the onset and showed 100% positivity on the 8th day. The virus strain in the present outbreak was highly similar to the virus isolated in Hanzhong Shaanxi in 2009. We conclude that HAdV-7 was the pathogen corresponding to the outbreak, and this is the first report of an ARD outbreak caused by HAdV-7 in military persons in China. Vaccine development, as well as enhanced epidemiological and virological surveillance of HAdV infections in China should be emphasized.


Asunto(s)
Infecciones por Adenovirus Humanos/epidemiología , Infecciones por Adenovirus Humanos/virología , Adenovirus Humanos/aislamiento & purificación , Infecciones del Sistema Respiratorio/epidemiología , Infecciones del Sistema Respiratorio/virología , Enfermedad Aguda/epidemiología , Infecciones por Adenovirus Humanos/diagnóstico , Adenovirus Humanos/clasificación , Adenovirus Humanos/genética , Adolescente , China/epidemiología , Brotes de Enfermedades , Femenino , Humanos , Masculino , Personal Militar , Datos de Secuencia Molecular , Filogenia , Infecciones del Sistema Respiratorio/diagnóstico , Adulto Joven
19.
Can J Microbiol ; 59(4): 252-9, 2013 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-23586749

RESUMEN

Listeria monocytogenes is resistant to fosfomycin in vitro but is susceptible in vivo due to increased expression of positive regulator factor A (PrfA) and its dependent factor, hexose phosphate transporter (Hpt), upon infection of host cells. Amberlite, a polymeric adsorbent resin, could induce PrfA-dependent gene expression and thus, in theory, improve the sensitivity of L. monocytogenes to fosfomycin in vitro. In the current study, an improved susceptibility test based on Amberlite was developed using reference strains. Thirty-five clinical isolates were further examined to verify those preliminary results. Briefly, Amberlite increased in vitro fosfomycin sensitivity of all strains. Optimal Amberlite concentrations, as evaluated through the expression of phospholipase B (PlcB) and Hpt, were 10% and 15% (w/v) in agar media and 3% (w/v) in broth media. Mueller-Hinton (MH) medium, tryptone soya (TS) medium, and brain heart infusion (BHI) medium were used to verify the results in the control strains using agar dilution and broth micro- and macro-dilution methods. Better listerial growth was shown in TS and BHI than in MH. Both broth dilution methods yielded lower minimal inhibitory concentration (MIC) of fosfomycin than the agar dilution method. The MIC of fosfomycin for 35 clinical isolates was 2-32 µg/mL, suggesting improved susceptibility. In conclusion, in vitro sensitivity of L. monocytogenes to fosfomycin was substantially improved in the presence of 3% Amberlite-supplemented TSB or BHIB and the broth microdilution method. This improved method revealed the potential antilisterial activity of fosfomycin in vitro and could facilitate the therapy of listeriosis using fosfomycin.


Asunto(s)
Antibacterianos/farmacología , Fosfomicina/farmacología , Listeria monocytogenes/efectos de los fármacos , Pruebas de Sensibilidad Microbiana/métodos , Resinas Sintéticas/química , Medios de Cultivo , Farmacorresistencia Bacteriana , Humanos , Listeriosis/tratamiento farmacológico , Reacción en Cadena en Tiempo Real de la Polimerasa
20.
Zhonghua Yu Fang Yi Xue Za Zhi ; 47(4): 367-70, 2013 Apr.
Artículo en Zh | MEDLINE | ID: mdl-23928646

RESUMEN

OBJECTIVE: To compare the differences between the direct immuno-fluorescent assay (DFA) and real-time quantitative PCR in detecting the Hantavirus (HV) in rat lungs. METHODS: From April to October in 2012, a total of 479 rats were caught by mouse-trap in residential or wild areas in Huxian, Jingyang, and Meixian of Shaanxi province, where haemorrhagic fever with renal syndrome (HFRS) was highly prevalent. The rats were dissected to take the two lungs, one was frozen and applied immuno-fluorescent assay to detect HV antigen while the other one was extracted its RNA and detected HV nucleic acid by real-time quantitative PCR. Then we compared the positive rate of the two methods. RESULTS: Out of the 479 rats, 105 were caught from residential areas and the other 374 were caught from wild areas. Among the 105 rats caught from residential areas, no HV were detected out neither by DFA nor by real-time quantitative PCR. Among the 374 wild rats, 13.1% (49/374) were detected HV positive by DFA and 14.7% (55/374) were detected HV positive by real-time quantitative PCR. The difference showed no statistical significance (χ(2) = 0.402, P = 0.526). When detecting each lung sample, the HV positive rate was 10.2% (49/479) under the detection by DFA while the HV positive rate was 11.5% (55/479) under the detection by real-time quantitative PCR. The difference had no statistical significance (χ(2) = 1.286, P = 0.257) and the consistency coefficient was 68.2% under the paired chi-square test analysis, which showed high consistency (u = 11.759, P < 0.05). The sensitivity of real-time quantitative PCR to detect HV was 77.6% (38/49) comparing with DFA as standard, and the specificity was 96.1% (413/430). Out of the 9 suspected HV positive sample detected by DFA, 6 were confirmed positive by real-time quantitative PCR and 3 were denied. CONCLUSION: Compared with the DFA, real-time quantitative PCR could also be used to detect the infection of HV in rats, and the result might be more stable.


Asunto(s)
Técnica del Anticuerpo Fluorescente Directa , Orthohantavirus/aislamiento & purificación , Reacción en Cadena en Tiempo Real de la Polimerasa , Animales , Fiebre Hemorrágica con Síndrome Renal/epidemiología , Fiebre Hemorrágica con Síndrome Renal/prevención & control , Pulmón/virología , Ratas
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