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1.

RNA polymerase II dynamics and mRNA stability feedback scale mRNA amounts with cell size.

Swaffer, Matthew P; Marinov, Georgi K; Zheng, Huan; Fuentes Valenzuela, Lucas; Tsui, Crystal Yee; Jones, Andrew W; Greenwood, Jessica; Kundaje, Anshul; Greenleaf, William J; Reyes-Lamothe, Rodrigo; Skotheim, Jan M.

Cell; 186(24): 5254-5268.e26, 2023 11 22.

Artículo en Inglés | MEDLINE | ID: mdl-37944513

2.

High-Throughput Discovery and Characterization of Human Transcriptional Effectors.

Tycko, Josh; DelRosso, Nicole; Hess, Gaelen T; Banerjee, Abhimanyu; Mukund, Aditya; Van, Mike V; Ego, Braeden K; Yao, David; Spees, Kaitlyn; Suzuki, Peter; Marinov, Georgi K; Kundaje, Anshul; Bassik, Michael C; Bintu, Lacramioara.

Cell; 183(7): 2020-2035.e16, 2020 12 23.

Artículo en Inglés | MEDLINE | ID: mdl-33326746

3.

Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size.

Swaffer, Matthew P; Kim, Jacob; Chandler-Brown, Devon; Langhinrichs, Maurice; Marinov, Georgi K; Greenleaf, William J; Kundaje, Anshul; Schmoller, Kurt M; Skotheim, Jan M.

Mol Cell; 81(23): 4861-4875.e7, 2021 12 02.

Artículo en Inglés | MEDLINE | ID: mdl-34731644

4.

The changing mouse embryo transcriptome at whole tissue and single-cell resolution.

He, Peng; Williams, Brian A; Trout, Diane; Marinov, Georgi K; Amrhein, Henry; Berghella, Libera; Goh, Say-Tar; Plajzer-Frick, Ingrid; Afzal, Veena; Pennacchio, Len A; Dickel, Diane E; Visel, Axel; Ren, Bing; Hardison, Ross C; Zhang, Yu; Wold, Barbara J.

Nature; 583(7818): 760-767, 2020 07.

Artículo en Inglés | MEDLINE | ID: mdl-32728245

5.

The MicroRNA-132 and MicroRNA-212 Cluster Regulates Hematopoietic Stem Cell Maintenance and Survival with Age by Buffering FOXO3 Expression.

Mehta, Arnav; Zhao, Jimmy L; Sinha, Nikita; Marinov, Georgi K; Mann, Mati; Kowalczyk, Monika S; Galimidi, Rachel P; Du, Xiaomi; Erikci, Erdem; Regev, Aviv; Chowdhury, Kamal; Baltimore, David.

Immunity; 42(6): 1021-32, 2015 Jun 16.

Artículo en Inglés | MEDLINE | ID: mdl-26084022

6.

Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila.

Hur, Junho K; Luo, Yicheng; Moon, Sungjin; Ninova, Maria; Marinov, Georgi K; Chung, Yun D; Aravin, Alexei A.

Genes Dev; 30(7): 840-55, 2016 Apr 01.

Artículo en Inglés | MEDLINE | ID: mdl-27036967

7.

Long-range single-molecule mapping of chromatin accessibility in eukaryotes.

Shipony, Zohar; Marinov, Georgi K; Swaffer, Matthew P; Sinnott-Armstrong, Nicholas A; Skotheim, Jan M; Kundaje, Anshul; Greenleaf, William J.

Nat Methods; 17(3): 319-327, 2020 03.

Artículo en Inglés | MEDLINE | ID: mdl-32042188

8.

Reboot the economy for resilience.

Marinov, Georgi K.

Nature; 581(7808): 262, 2020 05.

Artículo en Inglés | MEDLINE | ID: mdl-32427913

9.

Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state.

Le Thomas, Adrien; Rogers, Alicia K; Webster, Alexandre; Marinov, Georgi K; Liao, Susan E; Perkins, Edward M; Hur, Junho K; Aravin, Alexei A; Tóth, Katalin Fejes.

Genes Dev; 27(4): 390-9, 2013 Feb 15.

Artículo en Inglés | MEDLINE | ID: mdl-23392610

10.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue, Feng; Cheng, Yong; Breschi, Alessandra; Vierstra, Jeff; Wu, Weisheng; Ryba, Tyrone; Sandstrom, Richard; Ma, Zhihai; Davis, Carrie; Pope, Benjamin D; Shen, Yin; Pervouchine, Dmitri D; Djebali, Sarah; Thurman, Robert E; Kaul, Rajinder; Rynes, Eric; Kirilusha, Anthony; Marinov, Georgi K; Williams, Brian A; Trout, Diane; Amrhein, Henry; Fisher-Aylor, Katherine; Antoshechkin, Igor; DeSalvo, Gilberto; See, Lei-Hoon; Fastuca, Meagan; Drenkow, Jorg; Zaleski, Chris; Dobin, Alex; Prieto, Pablo; Lagarde, Julien; Bussotti, Giovanni; Tanzer, Andrea; Denas, Olgert; Li, Kanwei; Bender, M A; Zhang, Miaohua; Byron, Rachel; Groudine, Mark T; McCleary, David; Pham, Long; Ye, Zhen; Kuan, Samantha; Edsall, Lee; Wu, Yi-Chieh; Rasmussen, Matthew D; Bansal, Mukul S; Kellis, Manolis; Keller, Cheryl A; Morrissey, Christapher S.

Nature; 515(7527): 355-64, 2014 Nov 20.

Artículo en Inglés | MEDLINE | ID: mdl-25409824

11.

Population Genomics of Paramecium Species.

Johri, Parul; Krenek, Sascha; Marinov, Georgi K; Doak, Thomas G; Berendonk, Thomas U; Lynch, Michael.

Mol Biol Evol; 34(5): 1194-1216, 2017 05 01.

Artículo en Inglés | MEDLINE | ID: mdl-28204679

12.

Landscape of transcription in human cells.

Djebali, Sarah; Davis, Carrie A; Merkel, Angelika; Dobin, Alex; Lassmann, Timo; Mortazavi, Ali; Tanzer, Andrea; Lagarde, Julien; Lin, Wei; Schlesinger, Felix; Xue, Chenghai; Marinov, Georgi K; Khatun, Jainab; Williams, Brian A; Zaleski, Chris; Rozowsky, Joel; Röder, Maik; Kokocinski, Felix; Abdelhamid, Rehab F; Alioto, Tyler; Antoshechkin, Igor; Baer, Michael T; Bar, Nadav S; Batut, Philippe; Bell, Kimberly; Bell, Ian; Chakrabortty, Sudipto; Chen, Xian; Chrast, Jacqueline; Curado, Joao; Derrien, Thomas; Drenkow, Jorg; Dumais, Erica; Dumais, Jacqueline; Duttagupta, Radha; Falconnet, Emilie; Fastuca, Meagan; Fejes-Toth, Kata; Ferreira, Pedro; Foissac, Sylvain; Fullwood, Melissa J; Gao, Hui; Gonzalez, David; Gordon, Assaf; Gunawardena, Harsha; Howald, Cedric; Jha, Sonali; Johnson, Rory; Kapranov, Philipp; King, Brandon.

Nature; 489(7414): 101-8, 2012 Sep 06.

Artículo en Inglés | MEDLINE | ID: mdl-22955620

13.

The bioenergetic costs of a gene.

Lynch, Michael; Marinov, Georgi K.

Proc Natl Acad Sci U S A; 112(51): 15690-5, 2015 Dec 22.

Artículo en Inglés | MEDLINE | ID: mdl-26575626

14.

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

Marinov, Georgi K; Williams, Brian A; McCue, Ken; Schroth, Gary P; Gertz, Jason; Myers, Richard M; Wold, Barbara J.

Genome Res; 24(3): 496-510, 2014 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-24299736

15.

Defining functional DNA elements in the human genome.

Kellis, Manolis; Wold, Barbara; Snyder, Michael P; Bernstein, Bradley E; Kundaje, Anshul; Marinov, Georgi K; Ward, Lucas D; Birney, Ewan; Crawford, Gregory E; Dekker, Job; Dunham, Ian; Elnitski, Laura L; Farnham, Peggy J; Feingold, Elise A; Gerstein, Mark; Giddings, Morgan C; Gilbert, David M; Gingeras, Thomas R; Green, Eric D; Guigo, Roderic; Hubbard, Tim; Kent, Jim; Lieb, Jason D; Myers, Richard M; Pazin, Michael J; Ren, Bing; Stamatoyannopoulos, John A; Weng, Zhiping; White, Kevin P; Hardison, Ross C.

Proc Natl Acad Sci U S A; 111(17): 6131-8, 2014 Apr 29.

Artículo en Inglés | MEDLINE | ID: mdl-24753594

16.

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps.

Mortazavi, Ali; Pepke, Shirley; Jansen, Camden; Marinov, Georgi K; Ernst, Jason; Kellis, Manolis; Hardison, Ross C; Myers, Richard M; Wold, Barbara J.

Genome Res; 23(12): 2136-48, 2013 Dec.

Artículo en Inglés | MEDLINE | ID: mdl-24170599

17.

Inducible RasGEF1B circular RNA is a positive regulator of ICAM-1 in the TLR4/LPS pathway.

Ng, Wei Lun; Marinov, Georgi K; Liau, Ee Shan; Lam, Yi Lyn; Lim, Yat-Yuen; Ea, Chee-Kwee.

RNA Biol; 13(9): 861-71, 2016 09.

Artículo en Inglés | MEDLINE | ID: mdl-27362560

18.

Antitumor activity of a pyrrole-imidazole polyamide.

Yang, Fei; Nickols, Nicholas G; Li, Benjamin C; Marinov, Georgi K; Said, Jonathan W; Dervan, Peter B.

Proc Natl Acad Sci U S A; 110(5): 1863-8, 2013 Jan 29.

Artículo en Inglés | MEDLINE | ID: mdl-23319609

19.

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.

Reddy, Timothy E; Gertz, Jason; Pauli, Florencia; Kucera, Katerina S; Varley, Katherine E; Newberry, Kimberly M; Marinov, Georgi K; Mortazavi, Ali; Williams, Brian A; Song, Lingyun; Crawford, Gregory E; Wold, Barbara; Willard, Huntington F; Myers, Richard M.

Genome Res; 22(5): 860-9, 2012 May.

Artículo en Inglés | MEDLINE | ID: mdl-22300769

20.

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Landt, Stephen G; Marinov, Georgi K; Kundaje, Anshul; Kheradpour, Pouya; Pauli, Florencia; Batzoglou, Serafim; Bernstein, Bradley E; Bickel, Peter; Brown, James B; Cayting, Philip; Chen, Yiwen; DeSalvo, Gilberto; Epstein, Charles; Fisher-Aylor, Katherine I; Euskirchen, Ghia; Gerstein, Mark; Gertz, Jason; Hartemink, Alexander J; Hoffman, Michael M; Iyer, Vishwanath R; Jung, Youngsook L; Karmakar, Subhradip; Kellis, Manolis; Kharchenko, Peter V; Li, Qunhua; Liu, Tao; Liu, X Shirley; Ma, Lijia; Milosavljevic, Aleksandar; Myers, Richard M; Park, Peter J; Pazin, Michael J; Perry, Marc D; Raha, Debasish; Reddy, Timothy E; Rozowsky, Joel; Shoresh, Noam; Sidow, Arend; Slattery, Matthew; Stamatoyannopoulos, John A; Tolstorukov, Michael Y; White, Kevin P; Xi, Simon; Farnham, Peggy J; Lieb, Jason D; Wold, Barbara J; Snyder, Michael.

Genome Res; 22(9): 1813-31, 2012 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-22955991

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