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1.
Nat Methods ; 20(4): 590-599, 2023 04.
Artículo en Inglés | MEDLINE | ID: mdl-36928074

RESUMEN

Our understanding of nerve regeneration can be enhanced by delineating its underlying molecular activities at single-neuron resolution in model organisms such as Caenorhabditis elegans. Existing cell isolation techniques cannot isolate neurons with specific regeneration phenotypes from C. elegans. We present femtosecond laser microdissection (fs-LM), a single-cell isolation method that dissects specific cells directly from living tissue by leveraging the micrometer-scale precision of fs-laser ablation. We show that fs-LM facilitates sensitive and specific gene expression profiling by single-cell RNA sequencing (scRNA-seq), while mitigating the stress-related transcriptional artifacts induced by tissue dissociation. scRNA-seq of fs-LM isolated regenerating neurons revealed transcriptional programs that are correlated with either successful or failed regeneration in wild-type and dlk-1 (0) animals, respectively. This method also allowed studying heterogeneity displayed by the same type of neuron and found gene modules with expression patterns correlated with axon regrowth rate. Our results establish fs-LM as a spatially resolved single-cell isolation method for phenotype-to-genotype mapping.


Asunto(s)
Proteínas de Caenorhabditis elegans , Caenorhabditis elegans , Animales , Caenorhabditis elegans/genética , Microdisección/métodos , Neuronas/fisiología , Rayos Láser , Análisis de Secuencia de ARN , Quinasas Quinasa Quinasa PAM , Proteínas de Caenorhabditis elegans/genética
2.
Anal Chem ; 2024 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-39008658

RESUMEN

Deep learning (DL) is becoming more popular as a useful tool in various scientific domains, especially in chemistry applications. In the infrared spectroscopy field, where identifying functional groups in unknown compounds poses a significant challenge, there is a growing need for innovative approaches to streamline and enhance analysis processes. This study introduces a transformative approach leveraging a DL methodology based on transformer attention models. With a data set containing approximately 8677 spectra, our model utilizes self-attention mechanisms to capture complex spectral features and precisely predict 17 functional groups, outperforming conventional architectures in both functional group prediction accuracy and compound-level precision. The success of our approach underscores the potential of transformer-based methodologies in enhancing spectral analysis techniques.

3.
RNA Biol ; 19(1): 12-25, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-34965192

RESUMEN

PIWI interacting RNAs (piRNAs) have emerged as important gene regulators in recent times. Since the release of our first version of piRNAQuest in 2014, lots of novel piRNAs have been annotated in different species other than human, mouse and rat. Such new developments in piRNA research have led us to develop an updated database piRNAQuest V.2. It consists of 92,77,689 piRNA entries for 25 new species of different phylum along with human, mouse and rat. Besides providing primary piRNA features which include their genomic location, with further information on piRNAs overlapping with repeat elements, pseudogenes and syntenic regions, etc., the novel features of this version includes (i) density based cluster prediction, (ii) piRNA expression profile across various healthy and disease systems and (iii) piRNA target prediction. The concept of density-based piRNA cluster identification is robust as it does not consider parametric distribution in its model. The piRNA expression profile for 21 disease systems including cancer have been hosted in addition to 32 tissue specific piRNA expression profile for various species. Further, the piRNA target prediction section includes both predicted and curated piRNA targets within eight disease systems and developmental stages of mouse testis. Further, users can visualize the piRNA-target duplex structure and the ping-pong signature pattern for all the ping-pong piRNA partners in different species. Overall, piRNAQuest V.2 is an updated user-friendly database which will serve as a useful resource to survey, search and retrieve information on piRNAs for multiple species. This freely accessible database is available at http://dibresources.jcbose.ac.in/zhumur/pirnaquest2.


Asunto(s)
Biología Computacional/métodos , Perfilación de la Expresión Génica/métodos , ARN Interferente Pequeño/genética , Programas Informáticos , Transcriptoma , Animales , Mapeo Cromosómico , Bases de Datos Genéticas , Amplificación de Genes , Genómica/métodos , Humanos , Especificidad de Órganos , Secuencias Repetitivas de Ácidos Nucleicos , Especificidad de la Especie , Navegador Web
4.
Sensors (Basel) ; 22(10)2022 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-35632172

RESUMEN

In this study, we report an advanced fabrication technique to develop a miniature focused needle transducer. Two different types of high-frequency (100 MHz) transducers were fabricated using the lead magnesium niobate-lead titanate (PMN-0.3PT) and lithium niobate (LiNbO3) single crystals. In order to enhance the transducer's performance, a unique mass-spring matching layer technique was adopted, in which gold and parylene play the roles of the mass layer and spring layer, respectively. The PMN-0.3PT transducer had a 103 MHz center frequency with a -6 dB bandwidth of 52%, and a signal-to-noise ratio (SNR) of 42 dB. The center frequency, -6 dB bandwidth, and SNR of the LiNbO3 transducer were 105 MHz, 66%, and 44 dB, respectively. In order to compare and evaluate the transducers' performances, an ultrasonic biomicroscopy (UBM) imaging on the fish eye was performed. The results showed that the LiNbO3 transducer had a better contrast resolution compared to the PMN-0.3PT transducer. The fabricated transducer showed an excellent performance with high-resolution corneal epithelium imaging of the experimental fish eye. These interesting findings are useful for the future biomedical implementation of the fabricated transducers in the field of high-resolution ultrasound imaging and diagnosis purpose.


Asunto(s)
Agujas , Transductores , Animales , Diseño de Equipo , Radiografía , Ultrasonografía/métodos
5.
RNA Biol ; 18(8): 1136-1151, 2021 08.
Artículo en Inglés | MEDLINE | ID: mdl-33112702

RESUMEN

The recent discovery of long non-coding RNA as a regulatory molecule in the cellular system has altered the concept of the functional aptitude of the genome. Since our publication of the first version of LncRBase in 2014, there has been an enormous increase in the number of annotated lncRNAs of multiple species other than Human and Mouse. LncRBase V.2 hosts information of 549,648 lncRNAs corresponding to six additional species besides Human and Mouse, viz. Rat, Fruitfly, Zebrafish, Chicken, Cow and C.elegans. It provides additional distinct features such as (i) Transcription Factor Binding Site (TFBS) in the lncRNA promoter region, (ii) sub-cellular localization pattern of lncRNAs (iii) lnc-pri-miRNAs (iv) Possible small open reading frames (sORFs) within lncRNA. (v) Manually curated information of interacting target molecules and disease association of lncRNA genes (vi) Distribution of lncRNAs across multiple tissues of all species. Moreover, we have hosted ClinicLSNP within LncRBase V.2. ClinicLSNP has a comprehensive catalogue of lncRNA variants present within breast, ovarian, and cervical cancer inferred from 561 RNA-Seq data corresponding to these cancers. Further, we have checked whether these lncRNA variants overlap with (i)Repeat elements,(ii)CGI, (iii)TFBS within lncRNA loci (iv)SNP localization in trait-associated Linkage Disequilibrium(LD) region, (v)predicted the potentially pathogenic variants and (vi)effect of SNP on lncRNA secondary structure. Overall, LncRBaseV.2 is a user-friendly database to survey, search and retrieve information about multi-species lncRNAs. Further, ClinicLSNP will serve as a useful resource for cancer specific lncRNA variants and their related information. The database is freely accessible and available at http://dibresources.jcbose.ac.in/zhumur/lncrbase2/.


Asunto(s)
Neoplasias de la Mama/genética , MicroARNs/genética , Neoplasias Ováricas/genética , ARN Largo no Codificante/genética , ARN Interferente Pequeño/genética , Neoplasias del Cuello Uterino/genética , Animales , Neoplasias de la Mama/metabolismo , Neoplasias de la Mama/patología , Caenorhabditis elegans/genética , Caenorhabditis elegans/metabolismo , Bovinos , Pollos/genética , Pollos/metabolismo , Bases de Datos de Ácidos Nucleicos , Drosophila melanogaster/genética , Drosophila melanogaster/metabolismo , Femenino , Genoma , Humanos , Masculino , Ratones , MicroARNs/clasificación , MicroARNs/metabolismo , Anotación de Secuencia Molecular , Neoplasias Ováricas/metabolismo , Neoplasias Ováricas/patología , Polimorfismo de Nucleótido Simple , ARN Largo no Codificante/clasificación , ARN Largo no Codificante/metabolismo , ARN Interferente Pequeño/clasificación , ARN Interferente Pequeño/metabolismo , Ratas , Especificidad de la Especie , Neoplasias del Cuello Uterino/metabolismo , Neoplasias del Cuello Uterino/patología , Pez Cebra/genética , Pez Cebra/metabolismo
6.
Genomics ; 111(6): 1641-1650, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-30448525

RESUMEN

The exponential growth of next generation sequencing (NGS) data has put forward the challenge for its storage as well as its efficient and faster analysis. Storing the entire amount of data for a particular experiment and its alignment to the reference genome is an essential step for any quantitative analysis of NGS data. Here, we introduce streaming access technique 'ParStream-seq' that splits the bulk sequence data, accessed from a remote repository into short manageable packets followed by executing their alignment process in parallel in each of the compute core. The optimal packet size with fixed number of reads is determined in the stream that maximizes system utilization. Result shows a reduction in the execution time and improvement in the memory footprint. Overall, this streaming access technique provides means to overcome the hurdle of storing the entire volume of sequence data corresponding to a particular experiment, prior to its analysis.


Asunto(s)
Algoritmos , Secuenciación de Nucleótidos de Alto Rendimiento , Alineación de Secuencia , Análisis de Secuencia de ADN , Programas Informáticos
7.
Sensors (Basel) ; 20(7)2020 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-32260296

RESUMEN

In this study, a photoacoustic microscopy (PAM) system based on a multifocal point (MFP) transducer was fabricated to produce a large depth-of-field tissue image. The customized MFP transducer has seven focal points, distributed along with the transducer's axis, fabricated by separate spherically-focused surfaces. These surfaces generate distinct focal zones that are overlapped to extend the depth-of-field. This design allows extending the focal zone of 10 mm for the 11 MHz MFP transducer, which is a great improvement over the 0.48 mm focal zone of the 11 MHz single focal point (SFP) transducer. The PAM image penetration depths of a chicken-hemoglobin phantom using SFP and MFP transducers were measured as 5 mm and 8 mm, respectively. The significant increase in the PAM image-based penetration depth of the chicken-hemoglobin phantom was a result of using the customized MFP transducer.


Asunto(s)
Microscopía/métodos , Técnicas Fotoacústicas , Transductores , Animales , Pollos , Diseño de Equipo , Hemoglobinas/análisis , Procesamiento de Imagen Asistido por Computador , Carne/análisis , Microscopía/instrumentación , Ultrasonografía
8.
Photochem Photobiol Sci ; 18(5): 1110-1121, 2019 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-30747203

RESUMEN

We have thoroughly studied the luminescence behaviour of a cadmium based MOF, [Cd(C12N2H8)(C7N1O4H3)] {C12N2H8 = 1,10-phenanthroline, C7N1O4H3 = 2,5-pyridine dicarboxylate}, 1. Both steady-state and time-resolved luminescence spectroscopic experiments were performed to understand the dissimilar responses of compound 1 towards different metal ions in aqueous medium. Upon excitation at 280 nm, compound 1 showed a luminescence spectrum centered at 365 nm, which exhibited a three-fold turn-on in the presence of a trace amount of Zn2+ in aqueous solution, whereas in the presence of Co2+, Hg2+, Ni2+, Fe2+ and Cu2+ the luminescence of compound 1 got largely quenched. Compound 1 did not show any response in the presence of other common metal ions such as K+, Mg2+, Na+, Mn2+, and Cr3+. By analysing all the experimental results, we successfully explained the versatile luminescence behaviour of compound 1. The turn-on of luminescence in the presence of Zn2+ ions was due to coordination bond formation and enhancement of the rigidity of compound 1 which resulted in the reduction of non-radiative decay processes to a large extent. The quenching of luminescence in the presence of transition metal ions was found to be static in nature, and was due to the possibility of ligand to metal charge transfer using the vacant d-orbital of the metal ions. In the case of Hg2+ which is a closed cell heavy metal ion, the quenching of luminescence was also static in nature and was due to a two-way charge transfer mechanism. We have also performed density functional theory calculations and obtained supportive results for the proposed mechanisms of luminescence turn-on and quenching. Moreover, compound 1 could be established as a selective and efficient sensor of Zn2+ in aqueous solution even in the presence of Cd2+ and other metal ions.

9.
Crit Rev Biotechnol ; 38(5): 745-761, 2018 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-29124966

RESUMEN

In recent years, marine natural pigments have emerged as a powerful alternative in the various fields of food, cosmetic, and pharmaceutical industries because of their excellent biocompatibility, bioavailability, safety, and stability. Marine organisms are recognized as a rich source of natural pigments such as chlorophylls, carotenoids, and phycobiliproteins. Numerous studies have shown that marine natural pigments have considerable medicinal potential and promising applications in human health. In this review, we summarize the marine natural pigments as potential sources for therapeutic applications, including: antioxidant, anticancer, antiangiogenic, anti-obesity, anti-inflammatory activities, drug delivery, photothermal therapy (PTT), photodynamic therapy (PDT), photoacoustic imaging (PAI), and wound healing. Marine natural pigments will offer a better platform for future theranostic applications.


Asunto(s)
Organismos Acuáticos/química , Carotenoides , Clorofila , Animales , Antiinflamatorios , Fármacos Antiobesidad , Antineoplásicos , Carotenoides/química , Carotenoides/uso terapéutico , Clorofila/química , Clorofila/uso terapéutico , Humanos , Ratones , Sustancias Protectoras
10.
Inorg Chem ; 57(19): 12155-12165, 2018 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-30221511

RESUMEN

A new, three-dimensional cadmium based metal-organic framework [Cd3(PDA)1(tz)3Cl(H2O)4]·3H2O {PDA = 1,4-phenylenediacetate and tz = 1,2,4-triazolate}, 1, has been successfully synthesized using slow diffusion method at room temperature. The structure of compound 1 has been determined using single crystal X-ray diffraction. The triazolate ligands connect three different types of octahedral Cd2+ ions to form a two-dimensional structure. The chloride ion and PDA ligands connect the two-dimensional layers to form a three-dimensional structure. The phase purity of 1 was confirmed by powder X-ray diffraction, thermogravimetric analysis, and IR spectroscopy. Aqueous dispersion of compound 1 gives intense luminescence emission at 290 nm upon excitation at 225 nm. This emission was used for the luminescence based detection of pesticides, especially azinphos-methyl, chlorpyrifos, and parathion in aqueous medium. The selectivity of pesticide detection remains unaltered even in the presence of surfactant molecules. The mechanisms of luminescence quenching were successfully explained by the combination of absorption of excitation light, resonance energy transfer, and the possibility of electron transfer. Experimental findings are also well supported by the density functional theory calculations. Selectivity of pesticides detection in real samples such as apple and tomato juice has also been observed.


Asunto(s)
Cadmio/química , Sustancias Luminiscentes/química , Malus/química , Estructuras Metalorgánicas/química , Plaguicidas/análisis , Solanum lycopersicum/química , Agua/análisis , Cristalografía por Rayos X , Frutas/química , Ligandos , Luminiscencia , Mediciones Luminiscentes/métodos , Modelos Moleculares , Triazoles/química
11.
Phys Chem Chem Phys ; 17(37): 23720-3, 2015 Oct 07.
Artículo en Inglés | MEDLINE | ID: mdl-26325370

RESUMEN

We study the effective polarity of an air/liquid-mixture interface by using interface-selective heterodyne-detected electronic sum frequency generation (HD-ESFG) and vibrational sum frequency generation (HD-VSFG) spectroscopies. With water and N,N-dimethylformamide (DMF) chosen as two components of the liquid mixture, the bulk polarity of the mixture is controlled nearly arbitrarily by the mixing ratio. The effective polarity of the air/mixture interface is evaluated by HD-ESFG with a surface-active solvatochromic molecule used as a polarity indicator. Surprisingly, the interfacial effective polarity of the air/mixture interface increases significantly, when the bulk polarity of the mixture decreases (i.e. when the fraction of DMF increases). Judging from the hydrogen-bond structure at the air/mixture interface clarified by HD-VSFG, this anomalous change of the interfacial effective polarity is attributed to the interface-specific solvation structure around the indicator molecule at the air/mixture interface.

12.
Acta Biomater ; 182: 213-227, 2024 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-38734286

RESUMEN

The strategic integration of multi-functionalities within a singular nanoplatform has received growing attention for enhancing treatment efficacy, particularly in chemo-photothermal therapy. This study introduces a comprehensive concept of Janus nanoparticles (JNPs) composed of Au and Fe3O4 nanostructures intricately bonded with ß-cyclodextrins (ß-CD) to encapsulate 5-Fluorouracil (5-FU) and Ibuprofen (IBU). This strategic structure is engineered to exploit the synergistic effects of chemo-photothermal therapy, underscored by their exceptional biocompatibility and photothermal conversion efficiency (∼32.88 %). Furthermore, these ß-CD-conjugated JNPs enhance photodynamic therapy by generating singlet oxygen (1O2) species, offering a multi-modality approach to cancer eradication. Computer simulation results were in good agreement with in vitro and in vivo assays. Through these studies, we were able to prove the improved tumor ablation ability of the drug-loaded ß-CD-conjugated JNPs, without inducing adverse effects in tumor-bearing nude mice. The findings underscore a formidable tumor ablation potency of ß-CD-conjugated Au-Fe3O4 JNPs, heralding a new era in achieving nuanced, highly effective, and side-effect-free cancer treatment modalities. STATEMENT OF SIGNIFICANCE: The emergence of multifunctional nanoparticles marks a pivotal stride in cancer therapy research. This investigation unveils Janus nanoparticles (JNPs) amalgamating gold (Au), iron oxide (Fe3O4), and ß-cyclodextrins (ß-CD), encapsulating 5-Fluorouracil (5-FU) and Ibuprofen (IBU) for synergistic chemo-photothermal therapy. Demonstrating both biocompatibility and potent photothermal properties (∼32.88 %), these JNPs present a promising avenue for cancer treatment. Noteworthy is their heightened photodynamic efficiency and remarkable tumor ablation capabilities observed in vitro and in vivo, devoid of adverse effects. Furthermore, computational simulations validate their interactions with cancer cells, bolstering their utility as an emerging therapeutic modality. This endeavor pioneers a secure and efficacious strategy for cancer therapy, underscoring the significance of ß-CD-conjugated Au-Fe3O4 JNPs as innovative nanoplatforms with profound implications for the advancement of cancer therapy.


Asunto(s)
Oro , Ratones Desnudos , beta-Ciclodextrinas , Animales , Oro/química , Oro/farmacología , beta-Ciclodextrinas/química , Humanos , Ratones , Fluorouracilo/farmacología , Fluorouracilo/química , Ibuprofeno/farmacología , Ibuprofeno/química , Terapia Fototérmica , Línea Celular Tumoral , Fotoquimioterapia/métodos , Ratones Endogámicos BALB C , Compuestos Férricos/química , Compuestos Férricos/farmacología
13.
Colloids Surf B Biointerfaces ; 238: 113910, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38640797

RESUMEN

This study represents an innovative approach to construct multi-functional nanoplatforms for cancer diagnosis and therapy by combining hyaluronic acid (HA) with iron-platinum nanoparticles (FePt NPs). These HA-coated FePt NPs, referred to as FePt@HA NPs, demonstrated remarkable biocompatibility, high absorption, and excellent light-to-heat conversion properties in the near-infrared (NIR) region, making them ideal candidates for photothermal therapy (PTT). In vitro studies revealed their effective cancer cell eradication under NIR laser irradiation, while in vivo experiments on mice showcased their superior heating capabilities. Moreover, FePt@HA NPs exhibited a distinct and strong photoacoustic (PA) signal, facilitating enhanced and precise intra-tumoral PA imaging. Our results highlight the potential of FePt@HA NPs as promising photothermal agents for future PTT applications. They offer high selectivity, precision, and minimal side effects in cancer treatment, along with their valuable PA imaging application for tumor localization and characterization.


Asunto(s)
Ácido Hialurónico , Hierro , Nanopartículas del Metal , Técnicas Fotoacústicas , Terapia Fototérmica , Platino (Metal) , Ácido Hialurónico/química , Ácido Hialurónico/farmacología , Técnicas Fotoacústicas/métodos , Platino (Metal)/química , Platino (Metal)/farmacología , Animales , Ratones , Hierro/química , Humanos , Nanopartículas del Metal/química , Supervivencia Celular/efectos de los fármacos , Ratones Endogámicos BALB C , Tamaño de la Partícula , Propiedades de Superficie , Línea Celular Tumoral
14.
Traffic ; 12(4): 372-85, 2011 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-21199219

RESUMEN

Microfluidic devices have been developed for imaging behavior and various cellular processes in Caenorhabditis elegans, but not subcellular processes requiring high spatial resolution. In neurons, essential processes such as axonal, dendritic, intraflagellar and other long-distance transport can be studied by acquiring fast time-lapse images of green fluorescent protein (GFP)-tagged moving cargo. We have achieved two important goals in such in vivo studies namely, imaging several transport processes in unanesthetized intact animals and imaging very early developmental stages. We describe a microfluidic device for immobilizing C. elegans and Drosophila larvae that allows imaging without anesthetics or dissection. We observed that for certain neuronal cargoes in C. elegans, anesthetics have significant and sometimes unexpected effects on the flux. Further, imaging the transport of certain cargo in early developmental stages was possible only in the microfluidic device. Using our device we observed an increase in anterograde synaptic vesicle transport during development corresponding with synaptic growth. We also imaged Q neuroblast divisions and mitochondrial transport during early developmental stages of C. elegans and Drosophila, respectively. Our simple microfluidic device offers a useful means to image high-resolution subcellular processes in C. elegans and Drosophila and can be readily adapted to other transparent or translucent organisms.


Asunto(s)
Técnicas Analíticas Microfluídicas/métodos , Neuronas/metabolismo , Imagen de Lapso de Tiempo/métodos , Anestésicos/farmacología , Animales , Animales Modificados Genéticamente , Axones/metabolismo , Transporte Biológico , Caenorhabditis elegans , Corriente Citoplasmática , Dendritas/metabolismo , Disección , Drosophila , Proteínas Fluorescentes Verdes/metabolismo , Mitocondrias/metabolismo , Neuronas/efectos de los fármacos , Orgánulos/metabolismo , Fracciones Subcelulares/metabolismo , Membranas Sinápticas/metabolismo , Vesículas Sinápticas/metabolismo
15.
Cell Rep ; 42(6): 112544, 2023 06 27.
Artículo en Inglés | MEDLINE | ID: mdl-37227820

RESUMEN

Maternal RNAs are stored from minutes to decades in oocytes throughout meiosis I arrest in a transcriptionally quiescent state. Recent reports, however, propose a role for nascent transcription in arrested oocytes. Whether arrested oocytes launch nascent transcription in response to environmental or hormonal signals while maintaining the meiosis I arrest remains undetermined. We test this by integrating single-cell RNA sequencing, RNA velocity, and RNA fluorescence in situ hybridization on C. elegans meiosis I arrested oocytes. We identify transcripts that increase as the arrested meiosis I oocyte ages, but rule out extracellular signaling through ERK MAPK and nascent transcription as a mechanism for this increase. We report transcript acquisition from neighboring somatic cells as a mechanism of transcript increase during meiosis I arrest. These analyses provide a deeper view at single-cell resolution of the RNA landscape of a meiosis I arrested oocyte and as it prepares for oocyte maturation and fertilization.


Asunto(s)
Caenorhabditis elegans , Oocitos , Animales , Caenorhabditis elegans/genética , Hibridación Fluorescente in Situ , Meiosis/genética , ARN
16.
Adv Colloid Interface Sci ; 321: 103013, 2023 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-37839281

RESUMEN

Hydroxyapatite (HAp), a well-known biomaterial, has witnessed a remarkable evolution over the years, transforming from a simple biocompatible substance to an advanced functional material with a wide range of applications. This abstract provides an overview of the significant advancements in the field of HAp and its journey towards becoming a multifunctional material. Initially recognized for its exceptional biocompatibility and bioactivity, HAp gained prominence in the field of bone tissue engineering and dental applications. Its ability to integrate with surrounding tissues, promote cellular adhesion, and facilitate osseointegration made it an ideal candidate for various biomedical implants and coatings. As the understanding of HAp grew, researchers explored its potential beyond traditional biomaterial applications. With advances in material synthesis and engineering, HAp began to exhibit unique properties that extended its utility to other disciplines. Researchers successfully tailored the composition, morphology, and surface characteristics of HAp, leading to enhanced mechanical strength, controlled drug release capabilities, and improved biodegradability. These modifications enabled the utilization of HAp in drug delivery systems, biosensors, tissue engineering scaffolds, and regenerative medicine applications. Moreover, the exceptional biomineralization properties of HAp allowed for the incorporation of functional ions and molecules during synthesis, leading to the development of bioactive coatings and composites with specific therapeutic functionalities. These functionalized HAp materials have demonstrated promising results in antimicrobial coatings, controlled release systems for growth factors and therapeutic agents, and even as catalysts in chemical reactions. In recent years, HAp nanoparticles and nanostructured materials have emerged as a focal point of research due to their unique physicochemical properties and potential for targeted drug delivery, imaging, and theranostic applications. The ability to manipulate the size, shape, and surface chemistry of HAp at the nanoscale has paved the way for innovative approaches in personalized medicine and regenerative therapies. This abstract highlights the exceptional evolution of HAp, from a traditional biomaterial to an advanced functional material. The exploration of novel synthesis methods, surface modifications, and nanoengineering techniques has expanded the horizon of HAp applications, enabling its integration into diverse fields ranging from biomedicine to catalysis. Additionally, this manuscript discusses the emerging prospects of HAp-based materials in photocatalysis, sensing, and energy storage, showcasing its potential as an advanced functional material beyond the realm of biomedical applications. As research in this field progresses, the future holds tremendous potential for HAp-based materials to revolutionize medical treatments and contribute to the advancement of science and technology.


Asunto(s)
Nanopartículas , Nanoestructuras , Materiales Biocompatibles/farmacología , Materiales Biocompatibles/química , Durapatita/química , Nanopartículas/química , Huesos
17.
Sci Rep ; 13(1): 11268, 2023 07 12.
Artículo en Inglés | MEDLINE | ID: mdl-37438409

RESUMEN

Organoids are three-dimensional structures of self-assembled cell aggregates that mimic anatomical features of in vivo organs and can serve as in vitro miniaturized organ models for drug testing. The most efficient way of studying drug toxicity and efficacy requires high-resolution imaging of a large number of organoids acquired in the least amount of time. Currently missing are suitable platforms capable of fast-paced high-content imaging of organoids. To address this knowledge gap, we present the OrganoidChip, a microfluidic imaging platform that incorporates a unique design to immobilize organoids for endpoint, fast imaging. The chip contains six parallel trapping areas, each having a staging and immobilization chamber, that receives organoids transferred from their native culture plates and anchors them, respectively. We first demonstrate that the OrganoidChip can efficiently immobilize intestinal and cardiac organoids without compromising their viability and functionality. Next, we show the capability of our device in assessing the dose-dependent responses of organoids' viability and spontaneous contraction properties to Doxorubicin treatment and obtaining results that are similar to off-chip experiments. Importantly, the chip enables organoid imaging at speeds that are an order of magnitude faster than conventional imaging platforms and prevents the acquisition of blurry images caused by organoid drifting, swimming, and fast stage movements. Taken together, the OrganoidChip is a promising microfluidic platform that can serve as a building block for a multiwell plate format that can provide high-throughput and high-resolution imaging of organoids in the future.


Asunto(s)
Placas Óseas , Hidrogeles , Diagnóstico por Imagen , Doxorrubicina , Organoides
18.
ACS Biomater Sci Eng ; 9(8): 4607-4618, 2023 08 14.
Artículo en Inglés | MEDLINE | ID: mdl-37452737

RESUMEN

Recently, various nanomaterials based on hydroxyapatite (HAp) have been developed for bioimaging applications. In particular, HAp doped with rare-earth elements has attracted significant attention, owing to its enhanced bioactivity and imaging properties. In this study, the wet precipitation method was used to synthesize HAp codoped with Yb and Gd. The synthesized Ybx-Gdx-HAp nanoparticles (NPs) were characterized via various techniques to analyze the crystal phase, functional groups, thermal characteristics, and particularly, the larger surface area. The IR783 fluorescence dye and a folic acid (FA) receptor were conjugated with the synthesized Ybx-Gdx-HAp NPs to develop an effective imaging contrast agent. The developed FA/IR783/Yb-Gd-HAp nanomaterial exhibited improved contrast, sensitivity, and tumor-specific properties, as demonstrated by using the customized LUX 4.0 fluorescence imaging system. An in vitro cytotoxicity study was performed to verify the biocompatibility of the synthesized NPs using MTT assay and fluorescence staining. Photodynamic therapy (PDT) was also applied to determine the photosensitizer properties of the synthesized Ybx-Gdx-HAp NPs. Further, reactive oxygen species generation was confirmed by Prussian blue decay and a 2',7'-dichlorofluorescin diacetate study. Moreover, MDA-MB-231 breast cancer cells were used to evaluate the efficiency of Ybx-Gdx-HAp NP-supported PDT.


Asunto(s)
Nanopartículas del Metal , Iterbio/química , Gadolinio/química , Durapatita/química , Medios de Contraste/química , Nanopartículas del Metal/química , Humanos , Neoplasias de la Mama/diagnóstico por imagen , Neoplasias de la Mama/terapia
19.
J Vis Exp ; (182)2022 04 11.
Artículo en Inglés | MEDLINE | ID: mdl-35467659

RESUMEN

Caenorhabditis elegans (C. elegans) have proved to be a valuable model system for studying developmental and cell biological processes. Understanding these biological processes often requires long-term and repeated imaging of the same animal. Long recovery times associated with conventional immobilization methods done on agar pads have detrimental effects on animal health making it inappropriate to repeatedly image the same animal over long periods of time. This paper describes a microfluidic chip design, fabrication method, on-chip C. elegans culturing protocol, and three examples of long-term imaging to study developmental processes in individual animals. The chip, fabricated with polydimethylsiloxane and bonded on a cover glass, immobilizes animals on a glass substrate using an elastomeric membrane that is deflected using nitrogen gas. Complete immobilization of C. elegans enables robust time-lapse imaging of cellular and sub-cellular events in an anesthetic-free manner. A channel geometry with a large cross-section allows the animal to move freely within two partially sealed isolation membranes permitting growth in the channel with a continuous food supply. Using this simple chip, imaging of developmental phenomena such as neuronal process growth, vulval development, and dendritic arborization in the PVD sensory neurons, as the animal grows inside the channel, can be performed. The long-term growth and imaging chip operates with a single pressure line, no external valves, inexpensive fluidic consumables, and utilizes standard worm handling protocols that can easily be adapted by other laboratories using C. elegans.


Asunto(s)
Fenómenos Biológicos , Microfluídica , Animales , Caenorhabditis elegans/fisiología , Diagnóstico por Imagen , Microfluídica/métodos
20.
Am J Ophthalmol ; 239: 66-73, 2022 07.
Artículo en Inglés | MEDLINE | ID: mdl-35122746

RESUMEN

PURPOSE: To evaluate the effect of mindfulness-based stress reduction (MBSR) on intraocular pressure (IOP) in patients with ocular hypertension (OHT). DESIGN: Parallel arm, single masked, randomized controlled trial. METHODS: Sixty patients with ocular hypertension and IOP > 21 and < 30 mmHg were recruited at a tertiary eye care centre in India. Thirty patients (group 1) underwent six weeks of one hour daily MBSR sessions, while the other 30 patients (group 2) were waitlisted and kept on follow-up. The primary outcome was change in IOP (ΔIOP) after six weeks of MBSR. Secondary outcomes were effect on serum cortisol level, diurnal variation of IOP, vessel perfusion and vessel density on optical coherence tomography angiography (OCTA), and quality of life (QOL). RESULTS: At six weeks, a significant decrease in IOP was noted in group 1 (23.05 ± 1.17 to 19.15 ± 1.45 mmHg; P = .001) compared with group 2 (22.55 ± 0.98 mmHg to 22.37 ± 1.07 mmHg; P = .107). The ΔIOP was significantly greater in group 1 (3.93 ± 1.47) than group 2 (0.17 ± 0.58; P = .001). The diurnal fluctuation of IOP decreased in group 1 (4.87 ± 1.13 mmHg to 2.73 ± 0.98 mmHg; P = .001) as compared with group 2 (4.50 ± 0.86 mmHg to 4.30 ± 0.83 mmHg; P = .227). Significant improvement in vessel perfusion, vessel density, and flux index was noted on OCTA in group 1 compared with group 2. Group 1 showed a significant decrease (P ≤ .001) in serum cortisol level and an improved QOL (P = .001). CONCLUSION: Mindfulness-based stress reduction was associated with a significant decrease in IOP and serum cortisol, along with an improvement in optic nerve head perfusion and QOL. Mindfulness-based stress reduction can be considered as a potential treatment option in the management of OHT.


Asunto(s)
Glaucoma , Atención Plena , Hipertensión Ocular , Humanos , Hidrocortisona , Presión Intraocular , Hipertensión Ocular/terapia , Calidad de Vida
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