Búsqueda | Portal de Búsqueda de la BVS España

1.

Boolean function metrics can assist modelers to check and choose logical rules.

Zobolas, John; Monteiro, Pedro T; Kuiper, Martin; Flobak, Åsmund.

J Theor Biol; 538: 111025, 2022 04 07.

Artículo en Inglés | MEDLINE | ID: mdl-35085537

2.

YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts.

Monteiro, Pedro T; Oliveira, Jorge; Pais, Pedro; Antunes, Miguel; Palma, Margarida; Cavalheiro, Mafalda; Galocha, Mónica; Godinho, Cláudia P; Martins, Luís C; Bourbon, Nuno; Mota, Marta N; Ribeiro, Ricardo A; Viana, Romeu; Sá-Correia, Isabel; Teixeira, Miguel C.

Nucleic Acids Res; 48(D1): D642-D649, 2020 01 08.

Artículo en Inglés | MEDLINE | ID: mdl-31586406

3.

Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: Clues on host survival and probiotic activity based on promoter sequence variability.

Pais, Pedro; Oliveira, Jorge; Almeida, Vanda; Yilmaz, Melike; Monteiro, Pedro T; Teixeira, Miguel C.

Genomics; 113(2): 530-539, 2021 03.

Artículo en Inglés | MEDLINE | ID: mdl-33482324

4.

From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon.

Oliveira, Jorge; Antunes, Miguel; Godinho, Claudia P; Teixeira, Miguel C; Sá-Correia, Isabel; Monteiro, Pedro T.

BMC Bioinformatics; 22(1): 399, 2021 Aug 10.

Artículo en Inglés | MEDLINE | ID: mdl-34376148

5.

The N.C.Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts.

Godinho, Cláudia P; Palma, Margarida; Oliveira, Jorge; Mota, Marta N; Antunes, Miguel; Teixeira, Miguel C; Monteiro, Pedro T; Sá-Correia, Isabel.

FEMS Yeast Res; 21(6)2021 09 11.

Artículo en Inglés | MEDLINE | ID: mdl-34427650

6.

YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae.

Teixeira, Miguel C; Monteiro, Pedro T; Palma, Margarida; Costa, Catarina; Godinho, Cláudia P; Pais, Pedro; Cavalheiro, Mafalda; Antunes, Miguel; Lemos, Alexandre; Pedreira, Tiago; Sá-Correia, Isabel.

Nucleic Acids Res; 46(D1): D348-D353, 2018 01 04.

Artículo en Inglés | MEDLINE | ID: mdl-29036684

7.

On logical bifurcation diagrams.

Abou-Jaoudé, Wassim; Monteiro, Pedro T.

J Theor Biol; 466: 39-63, 2019 04 07.

Artículo en Inglés | MEDLINE | ID: mdl-30658053

8.

Cooperative development of logical modelling standards and tools with CoLoMoTo.

Naldi, Aurélien; Monteiro, Pedro T; Müssel, Christoph; Kestler, Hans A; Thieffry, Denis; Xenarios, Ioannis; Saez-Rodriguez, Julio; Helikar, Tomas; Chaouiya, Claudine.

Bioinformatics; 31(7): 1154-9, 2015 Apr 01.

Artículo en Inglés | MEDLINE | ID: mdl-25619997

9.

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

Francisco, Alexandre P; Vaz, Cátia; Monteiro, Pedro T; Melo-Cristino, José; Ramirez, Mário; Carriço, Joäo A.

BMC Bioinformatics; 13: 87, 2012 May 08.

Artículo en Inglés | MEDLINE | ID: mdl-22568821

10.

Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach.

Pais, Pedro; Oliveira, Jorge; Viana, Romeu; Costa, Inês V; Sá-Correia, Isabel; Monteiro, Pedro T; Teixeira, Miguel C.

Methods Mol Biol; 2477: 419-437, 2022.

Artículo en Inglés | MEDLINE | ID: mdl-35524130

11.

Prediction and Boolean logical modelling of synergistic microRNA regulatory networks during reprogramming of male germline pluripotent stem cells.

Guttula, Praveen Kumar; Monteiro, Pedro T; Gupta, Mukesh Kumar.

Biosystems; 207: 104453, 2021 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-34129895

12.

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.

Monteiro, Pedro T; Mendes, Nuno D; Teixeira, Miguel C; d'Orey, Sofia; Tenreiro, Sandra; Mira, Nuno P; Pais, Hélio; Francisco, Alexandre P; Carvalho, Alexandra M; Lourenço, Artur B; Sá-Correia, Isabel; Oliveira, Arlindo L; Freitas, Ana T.

Nucleic Acids Res; 36(Database issue): D132-6, 2008 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-18032429

13.

Revision of Boolean Models of Regulatory Networks Using Stable State Observations.

Gouveia, Filipe; Lynce, Inês; Monteiro, Pedro T.

J Comput Biol; 27(2): 144-155, 2020 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-31794671

14.

A Boolean Logical model for Reprogramming of Testes-derived male Germline Stem Cells into Germline pluripotent stem cells.

Guttula, Praveen Kumar; Monteiro, Pedro T; Gupta, Mukesh Kumar.

Comput Methods Programs Biomed; 192: 105473, 2020 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-32305736

15.

Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae.

Monteiro, Pedro T; Pedreira, Tiago; Galocha, Monica; Teixeira, Miguel C; Chaouiya, Claudine.

Sci Rep; 10(1): 17744, 2020 10 20.

Artículo en Inglés | MEDLINE | ID: mdl-33082399

16.

Hybrid Epithelial-Mesenchymal Phenotypes Are Controlled by Microenvironmental Factors.

Selvaggio, Gianluca; Canato, Sara; Pawar, Archana; Monteiro, Pedro T; Guerreiro, Patrícia S; Brás, M Manuela; Janody, Florence; Chaouiya, Claudine.

Cancer Res; 80(11): 2407-2420, 2020 06 01.

Artículo en Inglés | MEDLINE | ID: mdl-32217696

17.

A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks.

Monteiro, Pedro T; Dumas, Estelle; Besson, Bruno; Mateescu, Radu; Page, Michel; Freitas, Ana T; de Jong, Hidde.

BMC Bioinformatics; 10: 450, 2009 Dec 30.

Artículo en Inglés | MEDLINE | ID: mdl-20042075

18.

Temporal logic patterns for querying dynamic models of cellular interaction networks.

Monteiro, Pedro T; Ropers, Delphine; Mateescu, Radu; Freitas, Ana T; de Jong, Hidde.

Bioinformatics; 24(16): i227-33, 2008 Aug 15.

Artículo en Inglés | MEDLINE | ID: mdl-18689830

19.

Repairing Boolean logical models from time-series data using Answer Set Programming.

Lemos, Alexandre; Lynce, Inês; Monteiro, Pedro T.

Algorithms Mol Biol; 14: 9, 2019.

Artículo en Inglés | MEDLINE | ID: mdl-30962813

20.

EpiLog: A software for the logical modelling of epithelial dynamics.

Varela, Pedro L; Ramos, Camila V; Monteiro, Pedro T; Chaouiya, Claudine.

F1000Res; 7: 1145, 2018.

Artículo en Inglés | MEDLINE | ID: mdl-30363398

Portal de Búsqueda de la BVS España

Información y Conocimiento para la Salud

Configurar filtros

Su selección (0)

Formato de exportación:

Exportar: