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1.
Nucleic Acids Res ; 51(6): e31, 2023 04 11.
Artículo en Inglés | MEDLINE | ID: mdl-36715334

RESUMEN

Targeted mutagenesis mediated by nucleotide base deaminase-T7 RNA polymerase fusions has recently emerged as a novel and broadly useful strategy to power genetic diversification in the context of in vivo directed evolution campaigns. Here, we expand the utility of this approach by introducing a highly active adenosine deaminase-T7 RNA polymerase fusion protein (eMutaT7A→G), resulting in higher mutation frequencies to enable more rapid directed evolution. We also assess the benefits and potential downsides of using this more active mutator. We go on to show in Escherichia coli that adenosine deaminase-bearing mutators (MutaT7A→G or eMutaT7A→G) can be employed in tandem with a cytidine deaminase-bearing mutator (MutaT7C→T) to introduce all possible transition mutations simultaneously. We illustrate the efficacy of this in vivo mutagenesis approach by exploring mutational routes to antibacterial drug resistance. This work sets the stage for general application of optimized MutaT7 tools able to induce all types of transition mutations during in vivo directed evolution campaigns across diverse organisms.


Asunto(s)
Mutagénesis , Adenosina Desaminasa/genética , Escherichia coli/genética , Proteínas de Escherichia coli/genética , Mutación , Técnicas Genéticas
2.
J Ultrasound Med ; 42(8): 1841-1850, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-36840721

RESUMEN

OBJECTIVES: We sought to determine if point-of-care ultrasound (POCUS) performed on patients with COVID-19 in the emergency department (ED) can help predict disease course, severity, or identify complications. METHODS: This was a retrospective cohort study of adult ED patients who tested positive for COVID-19 at hospital admission or within 2 weeks of presentation and received heart or lung POCUS. Clips were reviewed for presence of decreased left ventricular ejection fraction (LVEF), right ventricular dilation, presence of B-lines, and pleural line abnormalities. Patients with worsening hypoxemic respiratory failure or shock requiring higher level of care and patients who expired were considered to have developed severe COVID-19. Regression analysis was performed to determine if there was a correlation between ED POCUS findings and development of severe COVID-19. RESULTS: A total of 155 patients met study criteria; 148 patients had documented cardiac views and 116 patients had documented lung views (113 with both). Mean age was 66.5 years old (±18.6) and 53% of subjects were female. Subjects with decreased LVEF that was not previously documented had increased odds of having severe COVID during their hospitalization compared to those with old or no dysfunction (OR 5.66, 95% CI: 1.55-19.95, P = .08). The presence of pleural line abnormalities was also predictive for development of severe COVID (OR 2.68, 95% CI: 1.04-6.92, P = .04). CONCLUSION: POCUS findings of previously unidentified decreased LVEF and pleural line abnormalities in patients with COVID-19 evaluated in the ED were correlated to a more severe clinical course and worse prognosis.


Asunto(s)
COVID-19 , Adulto , Humanos , Femenino , Anciano , Masculino , COVID-19/diagnóstico por imagen , Sistemas de Atención de Punto , Estudios Retrospectivos , Volumen Sistólico , Función Ventricular Izquierda , Ecocardiografía , Ultrasonografía , Pulmón/diagnóstico por imagen , Servicio de Urgencia en Hospital
3.
J Am Chem Soc ; 144(9): 3833-3842, 2022 03 09.
Artículo en Inglés | MEDLINE | ID: mdl-35230102

RESUMEN

Posttranslational modifications alter the biophysical properties of proteins and thereby influence cellular physiology. One emerging manner by which such modifications regulate protein functions is through their ability to perturb protein stability. Despite the increasing interest in this phenomenon, there are few methods that enable global interrogation of the biophysical effects of posttranslational modifications on the proteome. Here, we describe an unbiased proteome-wide approach to explore the influence of protein modifications on the thermodynamic stability of thousands of proteins in parallel. We apply this profiling strategy to study the effects of O-linked N-acetylglucosamine (O-GlcNAc), an abundant modification found on hundreds of proteins in mammals that has been shown in select cases to stabilize proteins. Using this thermal proteomic profiling strategy, we identify a set of 72 proteins displaying O-GlcNAc-dependent thermostability and validate this approach using orthogonal methods targeting specific proteins. These collective observations reveal that the majority of proteins influenced by O-GlcNAc are, surprisingly, destabilized by O-GlcNAc and cluster into distinct macromolecular complexes. These results establish O-GlcNAc as a bidirectional regulator of protein stability and provide a blueprint for exploring the impact of any protein modification on the meltome of, in principle, any organism.


Asunto(s)
Acetilglucosamina , Proteoma , Acetilglucosamina/metabolismo , Animales , Mamíferos/metabolismo , Procesamiento Proteico-Postraduccional , Proteoma/metabolismo , Proteómica
4.
J Ultrasound Med ; 41(10): 2487-2495, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-34964489

RESUMEN

OBJECTIVES: B-lines are ultrasound artifacts that can be used to detect a variety of pathologic lung conditions. Computer-aided methods to detect and quantify B-lines may standardize quantification and improve diagnosis by novice users. We sought to test the performance of an automated algorithm for the detection and quantification of B-lines in a handheld ultrasound device (HHUD). METHODS: Ultrasound images were prospectively collected on adult emergency department patients with dyspnea. Images from the first 124 patients were used for algorithm development. Clips from 80 unique subjects for testing were randomly selected in a predefined proportion of B-lines (0 B-lines, 1-2 B-lines, 3 or more B-lines) and blindly reviewed by five experts using both a manual and reviewer-adjusted process. Intraclass correlation coefficient (ICC) and weighted kappa were used to measure agreement, while an a priori threshold of an ICC (3,k) of 0.75 and precision of 0.3 were used to define adequate performance. RESULTS: ICC between the algorithm and manual count was 0.84 (95% confidence interval [CI] 0.75-0.90), with a precision of 0.15. ICC between the reviewer-adjusted count and the algorithm count was 0.94 (95% CI 0.90-0.96), and the ICC between the manual and reviewer-adjusted counts was 0.94 (95% CI 0.90-0.96). Weighted kappa was 0.72 (95% CI 0.49-0.95), 0.88 (95% CI 0.74-1), and 0.85 (95% CI 0.89-0.96), respectively. CONCLUSIONS: This study demonstrates a high correlation between point-of-care ultrasound experts and an automated algorithm to identify and quantify B-lines using an HHUD. Future research may incorporate this HHUD in clinical studies in multiple settings and users of varying experience levels.


Asunto(s)
Algoritmos , Disnea , Adulto , Humanos , Variaciones Dependientes del Observador , Reproducibilidad de los Resultados , Ultrasonografía/métodos
5.
J Cell Mol Med ; 25(14): 6496-6499, 2021 07.
Artículo en Inglés | MEDLINE | ID: mdl-34085765

RESUMEN

DNA fragmentation produced by apoptotic DNases (endonucleases) leads to irreversible cell death. Although apoptotic DNases are simultaneously induced following toxic/oxidative cell injury and/or failed DNA repair, the study of DNases in apoptosis has generally been reductionist in approach, focusing on individual DNases rather than their possible cooperativity. Coordinated induction of DNases would require a mechanism of communication; however, mutual DNase induction or activation of DNases by enzymatic or non-enzymatic mechanisms is not currently recognized. The evidence presented in this review suggests apoptotic DNases operate in a network in which members induce each other through the DNA breaks they produce. With DNA breaks being a common communicator among DNases, it would be logical to propose that DNA breaks from other sources such as oxidative DNA damage or actions of DNA repair endonucleases and DNA topoisomerases may also serve as triggers for a cooperative DNase feedback loop leading to elevated DNA fragmentation and subsequent cell death. Therefore, mutual induction of apoptotic DNases has serious implications for studies focused on activation or inhibition of specific DNases as a strategy for therapeutic intervention aimed at modulation of cell death.


Asunto(s)
Apoptosis/genética , Reparación del ADN/genética , ADN-Topoisomerasas/genética , Estrés Oxidativo/genética , Fragmentación del ADN , Desoxirribonucleasas/genética , Humanos
6.
J Pharmacol Exp Ther ; 376(1): 127-135, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33100271

RESUMEN

The practice of prescribing ß-blockers to lower blood pressure and mitigate perioperative cardiovascular events has been questioned because of reports of an increased risk of stroke. The benefit of ß-blocker therapy primarily relies on preventing activation of cardiac ß1-adrenergic receptors (ARs). However, we reported that ß1ARs also mediate vasodilator responses of rat cerebral arteries (CAs), implying that ß-blockers may impair cerebral blood flow under some conditions. Here, we defined the impact of metoprolol (MET), a widely prescribed ß1AR-selective antagonist, on adrenergic-elicited diameter responses of rat CAs ex vivo and in vivo. MET (1-10 µmol/l) prevented ß1AR-mediated increases in diameter elicited by dobutamine in cannulated rat CAs. The ß1AR-mediated dilation elicited by the endogenous adrenergic agonist norepinephrine (NE) was reversed to a sustained constriction by MET. Acute oral administration of MET (30 mg/kg) to rats in doses that attenuated resting heart rate and dobutamine-induced tachycardia also blunted ß1AR-mediated dilation of CAs. In the same animals, NE-induced dilation of CAs was reversed to sustained constriction. Administration of MET for 2 weeks in drinking water (2 mg/ml) or subcutaneously (15 mg/kg per day) also resulted in NE-induced constriction of CAs in vivo. Thus, doses of MET that protect the heart from adrenergic stimulation also prevent ß1AR-mediated dilation of CAs and favor anomalous adrenergic constriction. Our findings raise the possibility that the increased risk of ischemic stroke in patients on ß-blockers relates in part to adrenergic dysregulation of cerebrovascular tone. SIGNIFICANCE STATEMENT: ß-Blocker therapy using second-generation, cardioselective ß-blockers is associated with an increased risk of stroke, but the responsible mechanisms are unclear. Here, we report that either acute or chronic systemic administration of a cardioselective ß-blocker, metoprolol, mitigates adrenergic stimulation of the heart as an intended beneficial action. However, metoprolol concomitantly eliminates vasodilator responses to adrenergic stimuli of rat cerebral arteries in vivo as a potential cause of dysregulated cerebral blood flow predisposing to ischemic stroke.


Asunto(s)
Antagonistas de Receptores Adrenérgicos beta 1/farmacología , Cardiotónicos/farmacología , Arterias Cerebrales/efectos de los fármacos , Metoprolol/farmacología , Receptores Adrenérgicos beta 1/metabolismo , Vasodilatación , Agonistas de Receptores Adrenérgicos beta 1/farmacología , Antagonistas de Receptores Adrenérgicos beta 1/administración & dosificación , Antagonistas de Receptores Adrenérgicos beta 1/efectos adversos , Animales , Cardiotónicos/administración & dosificación , Cardiotónicos/efectos adversos , Arterias Cerebrales/fisiología , Dobutamina/farmacología , Frecuencia Cardíaca/efectos de los fármacos , Masculino , Metoprolol/administración & dosificación , Metoprolol/efectos adversos , Norepinefrina/farmacología , Ratas , Ratas Sprague-Dawley
7.
PLoS Biol ; 16(9): e3000008, 2018 09.
Artículo en Inglés | MEDLINE | ID: mdl-30222731

RESUMEN

The threat of viral pandemics demands a comprehensive understanding of evolution at the host-pathogen interface. Here, we show that the accessibility of adaptive mutations in influenza nucleoprotein at fever-like temperatures is mediated by host chaperones. Particularly noteworthy, we observe that the Pro283 nucleoprotein variant, which (1) is conserved across human influenza strains, (2) confers resistance to the Myxovirus resistance protein A (MxA) restriction factor, and (3) critically contributed to adaptation to humans in the 1918 pandemic influenza strain, is rendered unfit by heat shock factor 1 inhibition-mediated host chaperone depletion at febrile temperatures. This fitness loss is due to biophysical defects that chaperones are unavailable to address when heat shock factor 1 is inhibited. Thus, influenza subverts host chaperones to uncouple the biophysically deleterious consequences of viral protein variants from the benefits of immune escape. In summary, host proteostasis plays a central role in shaping influenza adaptation, with implications for the evolution of other viruses, for viral host switching, and for antiviral drug development.


Asunto(s)
Adaptación Fisiológica , Interacciones Huésped-Patógeno , Evasión Inmune , Sistema Inmunológico/virología , Inmunidad Innata , Chaperonas Moleculares/metabolismo , Orthomyxoviridae/inmunología , Secuencia de Aminoácidos , Animales , Fenómenos Biofísicos , Análisis Mutacional de ADN , Perros , Humanos , Células de Riñón Canino Madin Darby , Modelos Biológicos , Proteínas de Resistencia a Mixovirus/metabolismo , Nucleoproteínas/química , Estructura Secundaria de Proteína , Temperatura , Proteínas Virales/química
8.
Int J Mol Sci ; 22(1)2021 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-33401733

RESUMEN

Terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) assay is a long-established assay used to detect cell death-associated DNA fragmentation (3'-OH DNA termini) by endonucleases. Because these enzymes are particularly active in the kidney, TUNEL is widely used to identify and quantify DNA fragmentation and cell death in cultured kidney cells and animal and human kidneys resulting from toxic or hypoxic injury. The early characterization of TUNEL as an apoptotic assay has led to numerous misinterpretations of the mechanisms of kidney cell injury. Nevertheless, TUNEL is becoming increasingly popular for kidney injury assessment because it can be used universally in cultured and tissue cells and for all mechanisms of cell death. Furthermore, it is sensitive, accurate, quantitative, easily linked to particular cells or tissue compartments, and can be combined with immunohistochemistry to allow reliable identification of cell types or likely mechanisms of cell death. Traditionally, TUNEL analysis has been limited to the presence or absence of a TUNEL signal. However, additional information on the mechanism of cell death can be obtained from the analysis of TUNEL patterns.


Asunto(s)
Apoptosis/genética , Fragmentación del ADN , Etiquetado Corte-Fin in Situ/métodos , Enfermedades Renales/diagnóstico , Animales , Células Cultivadas , Desoxirribonucleasas/metabolismo , Endonucleasas/metabolismo , Humanos , Riñón/citología , Riñón/enzimología , Riñón/lesiones , Riñón/patología , Enfermedades Renales/enzimología , Enfermedades Renales/fisiopatología
9.
J Urol ; 202(3): 475-483, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31412438

RESUMEN

PURPOSE: Renal colic is common and CT (computerized tomography) is frequently utilized when the diagnosis of kidney stone is suspected. CT is accurate, but exposes patients to ionizing radiation and has not been shown to alter either interventional approaches or hospital admission rates. This multi-organizational transdisciplinary collaboration sought evidence-based, multispecialty consensus on optimal imaging across different clinical scenarios in patients with suspected renal colic in the acute setting. MATERIALS AND METHODS: In conjunction with the ACEP (American College of Emergency Physicians®) E-QUAL (Emergency Quality Network) we formed a nine-member panel with three physician representatives each from the ACEP, the ACR® (American College of Radiology) and the AUA (American Urological Association). A systematic literature review was used as the basis for a 3-step modified Delphi process to seek consensus on optimal imaging in 29 specific clinical scenarios. RESULTS: From an initial search yielding 6,337 records there were 232 relevant articles of acceptable evidence quality to guide the literature summary. At the completion of the Delphi process consensus, agreement was rated as perfect in 15 (52%), excellent in 8 (28%), good in 3 (10%) and moderate in 3 (10%) of the 29 scenarios. There were no scenarios where at least moderate consensus was not reached. CT was recommended in 7 scenarios (24%) with ultrasound in 9 (31%) and no further imaging needed in 13 (45%). CONCLUSIONS: Evidence and multispecialty consensus support ultrasound or no further imaging in specific clinical scenarios, with reduced-radiation dose CT to be employed when CT is needed in patients with suspected renal colic.


Asunto(s)
Consenso , Cólico Renal/diagnóstico por imagen , Sociedades Médicas/normas , Tomografía Computarizada por Rayos X/normas , Ultrasonografía/normas , Técnica Delphi , Medicina de Emergencia/normas , Humanos , Comunicación Interdisciplinaria , Radiología/normas , Tomografía Computarizada por Rayos X/efectos adversos , Estados Unidos , Urología/normas
10.
Nat Chem Biol ; 13(1): 9-11, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27820801

RESUMEN

Cas9-based technologies have transformed genome engineering and the interrogation of genomic functions, but methods to control such technologies across numerous dimensions-including dose, time, specificity, and mutually exclusive modulation of multiple genes-are still lacking. We conferred such multidimensional controls to diverse Cas9 systems by leveraging small-molecule-regulated protein degron domains. Application of our strategy to both Cas9-mediated genome editing and transcriptional activities opens new avenues for systematic genome interrogation.


Asunto(s)
Sistemas CRISPR-Cas/genética , Edición Génica/métodos , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Células Cultivadas , Células HEK293 , Humanos , Mutación INDEL/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Transcripción Genética/genética
12.
Ann Emerg Med ; 74(3): 391-399, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31402153

RESUMEN

STUDY OBJECTIVE: Renal colic is common and computed tomography (CT) is frequently used when the diagnosis of kidney stone is suspected. CT is accurate but exposes patients to ionizing radiation and has not been shown to alter either interventional approaches or hospital admission rates. This multiorganizational transdisciplinary collaboration seeks evidence-based, multispecialty consensus on optimal imaging across different clinical scenarios in patients with suspected renal colic in the acute setting. METHODS: In conjunction with the American College of Emergency Physicians (ACEP) Emergency Quality Network, we formed a 9-member panel with 3 physician representatives each from ACEP, the American College of Radiology, and the American Urology Association. A systematic literature review was used as the basis for a 3-step modified Delphi process to seek consensus on optimal imaging in 29 specific clinical scenarios. RESULTS: From an initial search yielding 6,337 records, there were 232 relevant articles of acceptable evidence quality to guide the literature summary. At the completion of the Delphi process consensus, out of the 29 scenarios agreement was rated as perfect in 15 (52%), excellent in 8 (28%), good in 3 (10%), and moderate in 3 (10%). There were no scenarios in which at least moderate consensus was not reached. CT was recommended in 7 scenarios (24%), with ultrasonography in 9 (31%) and no further imaging needed in 12 (45%). CONCLUSION: Evidence and multispecialty consensus support ultrasonography or no further imaging in specific clinical scenarios, with reduced-radiation-dose CT to be used when CT is needed for patients with suspected renal colic.


Asunto(s)
Cólico Renal/diagnóstico por imagen , Tomografía Computarizada por Rayos X , Ultrasonografía , Adulto , Anciano , Consenso , Técnica Delphi , Servicio de Urgencia en Hospital , Femenino , Humanos , Masculino , Persona de Mediana Edad , Sistemas de Atención de Punto , Tomografía Computarizada por Rayos X/efectos adversos
13.
Exp Cell Res ; 370(2): 426-433, 2018 09 15.
Artículo en Inglés | MEDLINE | ID: mdl-29981341

RESUMEN

A simple and reproducible procedure was developed to measure the volume of liquid microinjected into cells. A calibration curve of droplet fluorescence intensity versus volume was constructed by injecting a fluorescent dextran solution through a 125-150 µm diameter micropipette into an oil-filled culture dish to create a spray of varied-sized droplets. The droplets retained a spherical shape because they were in an oil medium and they settled onto a glass surface coated with a superhydrophobic surface. Fluorescent micrographs of the droplets were obtained and analyzed with Image-J software to quantify the fluorescence intensity and radius of each spherical droplet to produce the calibration curve. Subsequently, Dut-145 human prostate carcinoma cells were microinjected with the same fluorescent dextran solution and fluorescent micrographs of the cells were obtained using the identical exposure conditions used to photograph the droplets. The measured fluorescence intensity of the microinjected cells was entered into the formula for the regression line that was fit to the calibration curve allowing determination of the volume of solution injected into each cell. Thus, a mixture consisting of known concentrations of a test material of test material (macromolecules, drugs, etc.) and a fluorescent dextran, volumetric, tracer can be used to quantify the relationship between the amount of a microinjected material and subsequent effects on cells.


Asunto(s)
Calibración , Microinyecciones , Microscopía Fluorescente , Línea Celular Tumoral , Dextranos , Fluorescencia , Colorantes Fluorescentes/metabolismo , Humanos , Interacciones Hidrofóbicas e Hidrofílicas , Microscopía Fluorescente/métodos , Propiedades de Superficie
14.
J Ultrasound Med ; 38(2): 433-440, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30058124

RESUMEN

OBJECTIVES: An increasing number of medical schools are incorporating point-of-care ultrasound (POCUS) into preclinical and clinical curricula. The ultimate effect of this teaching is unclear, and there has been no distinct link between ultrasound (US) learning and existing standardized student assessments. Additionally, neither optimal timing nor methods of POCUS integration have been established. We aimed to demonstrate the effect of US teaching on standardized objective assessments that already exist within the curriculum and, in doing so, discern a route for POCUS curricular integration. METHODS: A longitudinal POCUS pilot curriculum was started in 2013, with the class of 2017. We collected basic science course results, standardized objective structured clinical examination scores, and United States Medical Licensing Examination step 1 scores from both the pilot group (n = 34) and matched control participants (n = 34) from the classes of 2017 and 2018. Scores between POCUS students and controls were analyzed by Student t tests. RESULTS: Students participating in the longitudinal POCUS program scored significantly higher on the physical examination portion of their clinical skill objective structured clinical examination assessment than the control group (mean score, 89.2 versus 85.7; P < .05). This parameter was the only area with a statistically significant difference. CONCLUSIONS: Point-of-care US program implementation may improve students' overall physical examination understanding and performance, even when US performance itself is not being tested. Introducing a POCUS curriculum may work best when designed in conjunction with the physical examination thread of a medical school curriculum.


Asunto(s)
Competencia Clínica/estadística & datos numéricos , Curriculum , Evaluación Educacional/estadística & datos numéricos , Sistemas de Atención de Punto , Ultrasonido/educación , Humanos , Estudios Longitudinales , Proyectos Piloto , Ultrasonografía
15.
J Am Chem Soc ; 140(37): 11560-11564, 2018 09 19.
Artículo en Inglés | MEDLINE | ID: mdl-29991261

RESUMEN

Laboratory time scale evolution in vivo relies on the generation of large, mutationally diverse gene libraries to rapidly explore biomolecule sequence landscapes. Traditional global mutagenesis methods are problematic because they introduce many off-target mutations that are often lethal and can engender false positives. We report the development and application of the MutaT7 chimera, a potent and highly targeted in vivo mutagenesis agent. MutaT7 utilizes a DNA-damaging cytidine deaminase fused to a processive RNA polymerase to continuously direct mutations to specific, well-defined DNA regions of any relevant length. MutaT7 thus provides a mechanism for in vivo targeted mutagenesis across multi-kb DNA sequences. MutaT7 should prove useful in diverse organisms, opening the door to new types of in vivo evolution experiments.


Asunto(s)
ADN , Proteínas , ADN/genética , Mutación , Proteínas/genética
16.
J Am Chem Soc ; 140(51): 18093-18103, 2018 12 26.
Artículo en Inglés | MEDLINE | ID: mdl-30427676

RESUMEN

The discovery and optimization of biomolecules that reliably function in metazoan cells is imperative for both the study of basic biology and the treatment of disease. We describe the development, characterization, and proof-of-concept application of a platform for directed evolution of diverse biomolecules of interest (BOIs) directly in human cells. The platform relies on a custom-designed adenovirus variant lacking multiple genes, including the essential DNA polymerase and protease genes, features that allow us to evolve BOIs encoded by genes as large as 7 kb while attaining the mutation rates and enforcing the selection pressure required for successful directed evolution. High mutagenesis rates are continuously attained by trans-complementation of a newly engineered, highly error-prone form of the adenoviral polymerase. Selection pressure that couples desired BOI functions to adenoviral propagation is achieved by linking the functionality of the encoded BOI to the production of adenoviral protease activity by the human cell. The dynamic range for directed evolution can be enhanced to several orders of magnitude via application of a small-molecule adenoviral protease inhibitor to modulate selection pressure during directed evolution experiments. This platform makes it possible, in principle, to evolve any biomolecule activity that can be coupled to adenoviral protease expression or activation by simply serially passaging adenoviral populations carrying the BOI. As proof-of-concept, we use the platform to evolve, directly in the human cell environment, several transcription factor variants that maintain high levels of function while gaining resistance to a small-molecule inhibitor. We anticipate that this platform will substantially expand the repertoire of biomolecules that can be reliably and robustly engineered for both research and therapeutic applications in metazoan systems.


Asunto(s)
Evolución Molecular Dirigida/métodos , Factores de Transcripción/metabolismo , Adenoviridae/genética , Fagos de Bacillus/enzimología , ADN Polimerasa Dirigida por ADN/genética , Doxorrubicina/farmacología , Resistencia a Medicamentos/genética , Células HEK293 , Humanos , Integrasas/genética , Leucina-ARNt Ligasa/genética , Mutagénesis , Péptido Hidrolasas/genética , Prueba de Estudio Conceptual , Ingeniería de Proteínas , Factores de Transcripción/genética , Proteínas Virales/genética
17.
Pediatr Crit Care Med ; 19(3): 179-185, 2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29206727

RESUMEN

OBJECTIVES: Perturbed hemodynamic function complicates severe malaria. The Fluid Expansion as Supportive Therapy trial demonstrated that fluid resuscitation, involving children with severe malaria, was associated with increased mortality, primarily due to cardiovascular collapse, suggesting that myocardial dysfunction may have a role. The aim of this study was to characterize cardiac function in children with severe malaria. DESIGN: A prospective observational study with clinical, laboratory, and echocardiographic data collected at presentation (T0) and 24 hours (T1) in children with severe malaria. Cardiac index and ejection fraction were calculated at T0 and T1. Cardiac troponin I and brain natriuretic peptide were measured at T0. We compared clinical and echocardiographic variables in children with and without severe malarial anemia (hemoglobin < 5 mg/dL) at T0 and T1. SETTING: Mbale Regional Referral Hospital. PATIENTS: Children 3 months to 12 years old with severe falciparum malaria. INTERVENTIONS: Usual care. MEASUREMENTS AND MAIN RESULTS: We enrolled 104 children, median age 23.3 months, including 61 children with severe malarial anemia. Cardiac troponin I levels were elevated (> 0.1 ng/mL) in n equals to 50, (48%), and median brain natriuretic peptide was within normal range (69.1 pg/mL; interquartile range, 48.4-90.8). At T0, median Cardiac index was significantly higher in the severe malarial anemia versus nonsevere malarial anemia group (6.89 vs 5.28 L/min/m) (p = 0.001), which normalized in both groups at T1 (5.60 vs 5.13 L/min/m) (p = 0.452). Cardiac index negatively correlated with hemoglobin, r equals to -0.380 (p < 0.001). Four patients (3.8%) had evidence of depressed cardiac systolic function (ejection fraction < 45%). Overall, six children died, none developed pulmonary edema, biventricular failure, or required diuretic treatment. CONCLUSIONS: Elevation of cardiac index, due to increased stroke volume, in severe malaria is a physiologic response to circulatory compromise and correlates with anemia. Following whole blood transfusion and antimalarial therapy, cardiac index in severe malarial anemia returns to normal. The majority (> 96%) of children with severe malaria have preserved myocardial systolic function. Although there is evidence for myocardial injury (elevated cardiac troponin I), this does not correlate with cardiac dysfunction.


Asunto(s)
Malaria Falciparum/complicaciones , Disfunción Ventricular/etiología , Anemia/complicaciones , Biomarcadores/sangre , Transfusión Sanguínea/estadística & datos numéricos , Niño , Preescolar , Ecocardiografía/métodos , Femenino , Fluidoterapia/estadística & datos numéricos , Humanos , Lactante , Malaria Falciparum/sangre , Masculino , Péptido Natriurético Encefálico/sangre , Estudios Prospectivos , Troponina I/sangre , Uganda , Disfunción Ventricular/epidemiología , Función Ventricular/fisiología
18.
J Urol ; 198(6): 1359-1366, 2017 12.
Artículo en Inglés | MEDLINE | ID: mdl-28652122

RESUMEN

PURPOSE: More than 1 million patients annually seek care in an emergency department for kidney stones but a minority require hospital admission or a urological procedure. We describe predictors of hospital admission or urological intervention. MATERIALS AND METHODS: This secondary analysis of prospective data included patients with an obstructing ureteral stone that was confirmed by computerized tomography in an emergency department. All patients also underwent point of care limited renal ultrasound. The need for urological intervention at 90 days was assessed by a followup interview. Logistic regression was used to identify predictors of admission and urological intervention, which were further stratified by disposition. Separate regression models with and without computerized tomography findings (point of care limited renal ultrasound only) were compared using c-statistics. RESULTS: Among a cohort of 475 patients with a symptomatic stone on computerized tomography 95 (20%) were admitted and 68 (72%) received an intervention. Of 380 discharged patients 66 (17%) required urological intervention. Admitted patients were more likely to have undergone a prior procedure, have evidence of kidney injury or infection, need opiate analgesia or have larger stones or hydronephrosis on point of care limited renal ultrasound. Predictors of intervention varied by disposition. However, regression models with and without computerized tomography findings demonstrated similar c-statistics. Discharged patients with larger stones, a longer pain duration at presentation and prior procedures were more likely to undergo intervention. CONCLUSIONS: Intervention was common among admitted patients but it occurred in a minority of those discharged. Predictors of intervention varied by disposition. Models incorporating computerized tomography findings were similar to those that did not incorporate such findings. These data support ultrasound first or delayed computerized tomography diagnostic pathways for patients deemed clinically suitable for discharge home.


Asunto(s)
Tratamiento de Urgencia , Admisión del Paciente/estadística & datos numéricos , Tomografía Computarizada por Rayos X , Cálculos Ureterales/diagnóstico por imagen , Cálculos Ureterales/cirugía , Procedimientos Quirúrgicos Urológicos/estadística & datos numéricos , Adulto , Servicio de Urgencia en Hospital , Femenino , Predicción , Humanos , Hidronefrosis/diagnóstico por imagen , Hidronefrosis/etiología , Riñón/diagnóstico por imagen , Masculino , Persona de Mediana Edad , Modelos Estadísticos , Estudios Prospectivos , Ultrasonografía , Cálculos Ureterales/complicaciones
19.
Am J Emerg Med ; 35(1): 106-111, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27793505

RESUMEN

OBJECTIVES: The primary objectives were to describe the diagnostic characteristics tricuspid annular plane systolic excursion (TAPSE) for pulmonary embolism (PE) and to optimize the measurement cutoff of TAPSE for the diagnosis of PE. Secondary objectives included assessment of interrater reliability and the quantitative visual estimation of TAPSE. METHODS: This is a prospective observational cohort study involving a convenience sample of patients at an urban academic emergency department. Patients underwent focused right heart echocardiogram (FOCUS) before computed tomographic angiography (CTA) for suspected PE. RESULTS: A total of 150 patients were enrolled, 32 of whom (21.3%) were diagnosed as having a PE. A receiver operating characteristic curve analysis yielded 2.0 cm as the optimal cutoff for TAPSE in the diagnosis of PE, with a sensitivity of 72% (95% confidence interval [CI], 53-86), a specificity of 66% (95% CI, 57-75), and an area under the curve of 0.73 (95% CI, 0.65-0.83). In patients with tachycardia or hypotension, post hoc analysis demonstrated that FOCUS is 100% (95% CI, 80-100) sensitive for PE, whereas TAPSE is 94% (95% CI, 71-99) sensitive for PE. The intraclass correlation coefficient was 0.87 (95% CI, 0.79-0.93). Emergency physicians with training in echocardiography accurately visually estimated TAPSE, with a κ statistic of 0.94 (95% CI, 0.87-0.98). CONCLUSIONS: Emergency physicians with training in echocardiography can reliably measure TAPSE and are able to accurately visually estimate TAPSE as either normal or abnormal. When using an abnormal cutoff of less than 2.0 cm, TAPSE has moderate diagnostic value in patients with suspected PE. On post hoc analysis, TAPSE and FOCUS appear to be highly sensitive for PE in patients with tachycardia or hypotension.


Asunto(s)
Angiografía por Tomografía Computarizada , Ecocardiografía , Medicina de Emergencia , Médicos , Embolia Pulmonar/diagnóstico por imagen , Válvula Tricúspide/diagnóstico por imagen , Disfunción Ventricular Derecha/diagnóstico por imagen , Adulto , Anciano , Anciano de 80 o más Años , Estudios de Cohortes , Femenino , Humanos , Masculino , Persona de Mediana Edad , Variaciones Dependientes del Observador , Sistemas de Atención de Punto , Pruebas en el Punto de Atención , Estudios Prospectivos , Embolia Pulmonar/complicaciones , Curva ROC , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Sístole , Disfunción Ventricular Derecha/etiología , Adulto Joven
20.
J Ultrasound Med ; 36(10): 1975-1985, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28586152

RESUMEN

Acute right upper quadrant (RUQ) pain is a common presenting symptom in emergency departments and outpatient medical practices, and is most commonly attributable to biliary and hepatic pathology. Ultrasound should be used as a first-line imaging modality for the diagnosis of gallstones and cholecystitis, as it allows the differentiation of medical and surgical causes of upper abdominal pathology, and in many circumstances is sufficient to guide patient management. Knowledge of strengths and limitations of ultrasound in the evaluation of RUQ is paramount in correct diagnosis. A spectrum of RUQ pathology for which a RUQ ultrasound examination should reasonably be considered as the initial imaging modality of choice will be reviewed.


Asunto(s)
Dolor Abdominal/etiología , Enfermedades de las Vías Biliares/diagnóstico por imagen , Colecistitis/diagnóstico por imagen , Hepatopatías/diagnóstico por imagen , Ultrasonografía/métodos , Dolor Abdominal/diagnóstico por imagen , Sistema Biliar/diagnóstico por imagen , Enfermedades de las Vías Biliares/complicaciones , Colecistitis/complicaciones , Colelitiasis/complicaciones , Colelitiasis/diagnóstico por imagen , Diagnóstico Diferencial , Servicio de Urgencia en Hospital , Femenino , Vesícula Biliar/diagnóstico por imagen , Humanos , Hígado/diagnóstico por imagen , Hepatopatías/complicaciones , Persona de Mediana Edad
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