Microscopy image analysis of p63 immunohistochemically stained laryngeal cancer lesions for predicting patient 5-year survival.

The aim of the present study was to design a microscopy image analysis (MIA) system for predicting the 5-year survival of patients with laryngeal squamous cell carcinoma, employing histopathology images of lesions, which had been immunohistochemically (IHC) stained for p63 expression. Biopsy materials from 42 patients, with verified laryngeal cancer and follow-up, were selected from the archives of the University Hospital of Patras, Greece. Twenty six patients had survived more than 5 years and 16 less than 5 years after the first diagnosis. Histopathology images were IHC stained for p63 expression. Images were first processed by a segmentation method for isolating the p63-expressed nuclei. Seventy-seven features were evaluated regarding texture, shape, and physical topology of nuclei, p63 staining, and patient-specific data. Those features, the probabilistic neural network classifier, the leave-one-out (LOO), and the bootstrap cross-validation methods, were used to design the MIA-system for assessing the 5-year survival of patients with laryngeal cancer. MIA-system accuracy was about 90 % and 85 %, employing the LOO and the Bootstrap methods, respectively. The image texture of p63-expressed nuclei appeared coarser and contained more edges in the 5-year non-survivor group. These differences were at a statistically significant level (p < 0.05). In conclusion, this study has proposed an MIA-system that may be of assistance to physicians, as a second opinion tool in assessing the 5-year survival of patients with laryngeal cancer, and it has revealed useful information regarding differences in nuclei texture between 5-year survivors and non-survivors.

Brain imaging: Comparison of T1W FLAIR BLADE with conventional T1W SE.

INTRODUCTION: Although T1 weighted spin echo (T1W SE) images are widely used to study anatomical details and pathologic abnormalities of the brain, its role in delineation of lesions and reduction of artifacts has not been thoroughly investigated. BLADE is a fairly new technique that has been reported to reduce motion artifacts and improve image quality. OBJECTIVE: The primary objective of this study is to compare the quality of T1-weighted fluid attenuated inversion recovery (FLAIR) images with BLADE technique (T1W FLAIR BLADE) and the quality of T1W SE images in the MR imaging of the brain. The goal is to highlight the advantages of the two sequences as well as which one can better reduce flow and motion artifacts so that the imaging of the lesions will not be impaired. MATERIALS AND METHODS: Brain examinations with T1W FLAIR BLADE and T1W SE sequences were performed on 48 patients using a 1.5T scanner. These techniques were evaluated by two radiologists based on: a) a qualitative analysis i.e. overall image quality, presence of artifacts, CSF nulling; and b) a quantitative analysis of signal-to-noise ratios (SNR), contrast-to-noise ratios (CNR) and Relative Contrast. The statistical analysis was performed using the Kruskal-Wallis non-parametric system. RESULTS: In the qualitative analysis, BLADE sequences had a higher scoring than the conventional sequences in all the cases. The overall image quality was better on T1W FLAIR BLADE. Motion and flow-related artifacts were lower in T1W FLAIR BLADE. Regarding the SNR measurements, T1W SE appeared to have higher values in the majority of cases, whilst T1W-FLAIR BLADE had higher values in the CNR and Relative Contrast measurements. CONCLUSION: T1W FLAIR BLADE sequence appears to be superior to T1W SE in overall image quality and reduction of motion and flow-pulsation artifacts as well as in nulling CSF and has been preferred by the clinicians. T1W FLAIR BLADE may be an alternative approach in brain MRI imaging.

Computer based correlation of the texture of P63 expressed nuclei with histological tumour grade, in laryngeal carcinomas.

BACKGROUND: P63 immunostaining has been considered as potential prognostic factor in laryngeal cancer. Considering that P63 is mainly nuclear stain, a possible correlation between the texture of P63-stained nuclei and the tumor's grade could be of value to diagnosis, since this may be related to biologic information imprinted as texture on P63 expressed nuclei. OBJECTIVE: To investigate the association between P63 stained nuclei and histologic grade in laryngeal tumor lesions. METHODS: Biopsy specimens from laryngeal tumour lesions of 55 patients diagnosed with laryngeal squamous cell carcinomas were immunohistochemically (IHC) stained for P63 expression. Four images were digitized from each patient's IHC specimens. P63 positively expressed nuclei were identified, the percentage of P63 expressed nuclei was computed, and 118 textural, morphological, shape, and architectural features were calculated from each one of the 55 laryngeal lesions. Data were split into the low grade (21 grade I lesions) and high grade (34 grade II and grade III lesions) classes for statistical analysis. RESULTS: With advancing grade, P63 expression decreased, P63 stained nuclei appeared of lower image intensity, more inhomogeneous, of higher local contrast, contained smaller randomly distributed dissimilar structures and had irregular shape. CONCLUSION: P63 expressed nuclei contain important information related to histologic grade.

Computer-based image analysis system designed to differentiate between low-grade and high-grade laryngeal cancer cases.

OBJECTIVE: To design a pattern recognition (PR) system for discriminating between low- and high-grade laryngeal cancer cases, employing immunohistochemically stained, for p63 expression, histopathology images. STUDY DESIGN: The PR system was designed to assist in the physician's diagnosis for improving patient survival. The material comprised 55 verified cases of laryngeal cancer, 21 of low-grade and 34 of high-grade malignancy. Histopathology images were first processed for automatically segmenting p63 expressed nuclei. Fifty-two features were next extracted from the segmented nuclei, concerning nuclei texture, shape, and physical topology in the image. Those features and the Probabilistic Neural Network classifier were used to design the PR system on the multiprocessors of the Nvidia 580 GTX graphics processing unit (GPU) card using the Compute Unified Device Architecture parallel programming model and C++ programming language. RESULTS: PR system performance in classifying laryngeal cancer cases as low grade and high grade was 85.7% and 94.1%, respectively. The system's overall accuracy was 90.9%, using 7 features, and its estimated accuracy to "unseen" by the system cases was 80%. CONCLUSION: Optimum system design was feasible after employing parallel processing techniques and GPU technology. The proposed system was structured so as to function in a clinical environment, as a research tool, and with the capability of being redesigned on site when new verified cases are added to its repository.

Variable selection in nonlinear modeling based on RBF networks and evolutionary computation.

In this paper a novel variable selection method based on Radial Basis Function (RBF) neural networks and genetic algorithms is presented. The fuzzy means algorithm is utilized as the training method for the RBF networks, due to its inherent speed, the deterministic approach of selecting the hidden node centers and the fact that it involves only a single tuning parameter. The trade-off between the accuracy and parsimony of the produced model is handled by using Final Prediction Error criterion, based on the RBF training and validation errors, as a fitness function of the proposed genetic algorithm. The tuning parameter required by the fuzzy means algorithm is treated as a free variable by the genetic algorithm. The proposed method was tested in benchmark data sets stemming from the scientific communities of time-series prediction and medicinal chemistry and produced promising results.

Development and evaluation of a PDA-based teleradiology terminal in thyroid nodule diagnosis.

We developed a wireless personal digital assistant (PDA)-based teleradiology terminal which allowed a secure connection to the hospital's Picture Archiving and Communication System (PACS) through the DICOM protocol. Ten members of the hospital's medical staff completed a questionnaire about its mobility, usability, stability, performance and diagnostic efficiency in a real health-care environment. There was a high degree of satisfaction with the system's mobility (mean score 4.1, SD 1.0, on a five-point scale), usability (mean score 4.2, SD 1.1), stability (mean score 3.9, SD 0.4) and performance (mean score 4.2, SD 0.6). The system was evaluated as a tool for providing assistance in diagnosing thyroid nodules from ultrasound images. A total of 144 ultrasound images with thyroid nodules were assessed by an expert. Six image quality attributes were evaluated. The physician concluded that the ultrasound thyroid images on the PDA screen were of similar quality to those displayed on a diagnostic visual display unit screen. However, the expert found difficulties in diagnosing microcalcification, internal echo texture and vascularity. The PDA terminal provided rapid, secure and convenient portable access to PACS images and the image quality was sufficient for diagnostic interpretation of ultrasound images of the thyroid.