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1.

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.

Davis, James J; Wattam, Alice R; Aziz, Ramy K; Brettin, Thomas; Butler, Ralph; Butler, Rory M; Chlenski, Philippe; Conrad, Neal; Dickerman, Allan; Dietrich, Emily M; Gabbard, Joseph L; Gerdes, Svetlana; Guard, Andrew; Kenyon, Ronald W; Machi, Dustin; Mao, Chunhong; Murphy-Olson, Dan; Nguyen, Marcus; Nordberg, Eric K; Olsen, Gary J; Olson, Robert D; Overbeek, Jamie C; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D; Shukla, Maulik; Thomas, Chris; VanOeffelen, Margo; Vonstein, Veronika; Warren, Andrew S; Xia, Fangfang; Xie, Dawen; Yoo, Hyunseung; Stevens, Rick.

Nucleic Acids Res; 48(D1): D606-D612, 2020 01 08.

Artículo en Inglés | MEDLINE | ID: mdl-31667520

2.

PATRIC as a unique resource for studying antimicrobial resistance.

Antonopoulos, Dionysios A; Assaf, Rida; Aziz, Ramy Karam; Brettin, Thomas; Bun, Christopher; Conrad, Neal; Davis, James J; Dietrich, Emily M; Disz, Terry; Gerdes, Svetlana; Kenyon, Ronald W; Machi, Dustin; Mao, Chunhong; Murphy-Olson, Daniel E; Nordberg, Eric K; Olsen, Gary J; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D; Santerre, John; Shukla, Maulik; Stevens, Rick L; VanOeffelen, Margo; Vonstein, Veronika; Warren, Andrew S; Wattam, Alice R; Xia, Fangfang; Yoo, Hyunseung.

Brief Bioinform; 20(4): 1094-1102, 2019 07 19.

Artículo en Inglés | MEDLINE | ID: mdl-28968762

3.

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.

Wattam, Alice R; Davis, James J; Assaf, Rida; Boisvert, Sébastien; Brettin, Thomas; Bun, Christopher; Conrad, Neal; Dietrich, Emily M; Disz, Terry; Gabbard, Joseph L; Gerdes, Svetlana; Henry, Christopher S; Kenyon, Ronald W; Machi, Dustin; Mao, Chunhong; Nordberg, Eric K; Olsen, Gary J; Murphy-Olson, Daniel E; Olson, Robert; Overbeek, Ross; Parrello, Bruce; Pusch, Gordon D; Shukla, Maulik; Vonstein, Veronika; Warren, Andrew; Xia, Fangfang; Yoo, Hyunseung; Stevens, Rick L.

Nucleic Acids Res; 45(D1): D535-D542, 2017 01 04.

Artículo en Inglés | MEDLINE | ID: mdl-27899627

4.

PATRIC, the bacterial bioinformatics database and analysis resource.

Wattam, Alice R; Abraham, David; Dalay, Oral; Disz, Terry L; Driscoll, Timothy; Gabbard, Joseph L; Gillespie, Joseph J; Gough, Roger; Hix, Deborah; Kenyon, Ronald; Machi, Dustin; Mao, Chunhong; Nordberg, Eric K; Olson, Robert; Overbeek, Ross; Pusch, Gordon D; Shukla, Maulik; Schulman, Julie; Stevens, Rick L; Sullivan, Daniel E; Vonstein, Veronika; Warren, Andrew; Will, Rebecca; Wilson, Meredith J C; Yoo, Hyun Seung; Zhang, Chengdong; Zhang, Yan; Sobral, Bruno W.

Nucleic Acids Res; 42(Database issue): D581-91, 2014 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-24225323

5.

PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species.

Gillespie, Joseph J; Wattam, Alice R; Cammer, Stephen A; Gabbard, Joseph L; Shukla, Maulik P; Dalay, Oral; Driscoll, Timothy; Hix, Deborah; Mane, Shrinivasrao P; Mao, Chunhong; Nordberg, Eric K; Scott, Mark; Schulman, Julie R; Snyder, Eric E; Sullivan, Daniel E; Wang, Chunxia; Warren, Andrew; Williams, Kelly P; Xue, Tian; Yoo, Hyun Seung; Zhang, Chengdong; Zhang, Yan; Will, Rebecca; Kenyon, Ronald W; Sobral, Bruno W.

Infect Immun; 79(11): 4286-98, 2011 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-21896772

6.

Phylogeny of gammaproteobacteria.

Williams, Kelly P; Gillespie, Joseph J; Sobral, Bruno W S; Nordberg, Eric K; Snyder, Eric E; Shallom, Joshua M; Dickerman, Allan W.

J Bacteriol; 192(9): 2305-14, 2010 May.

Artículo en Inglés | MEDLINE | ID: mdl-20207755

7.

Isolation and molecular characterization of group B Streptococcus from laboratory Long-Evans rats (Rattus norvegicus) with and without invasive group B streptococcal disease.

Bodi Winn, Caroline; Bakthavatchalu, Vasudevan; Esmail, Michael Y; Feng, Yan; Dzink-Fox, JoAnn; Richey, Lauren; Perkins, Scott E; Nordberg, Eric K; Fox, James G.

J Med Microbiol; 67(1): 97-109, 2018 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-29160197

8.

Disparities in spread and control of influenza in slums of Delhi: findings from an agent-based modelling study.

Adiga, Abhijin; Chu, Shuyu; Eubank, Stephen; Kuhlman, Christopher J; Lewis, Bryan; Marathe, Achla; Marathe, Madhav; Nordberg, Eric K; Swarup, Samarth; Vullikanti, Anil; Wilson, Mandy L.

BMJ Open; 8(1): e017353, 2018 01 21.

Artículo en Inglés | MEDLINE | ID: mdl-29358419

9.

The Complete Genome Sequence of the Emerging Pathogen Mycobacterium haemophilum Explains Its Unique Culture Requirements.

Tufariello, JoAnn M; Kerantzas, Christopher A; Vilchèze, Catherine; Calder, R Brent; Nordberg, Eric K; Fischer, Jack A; Hartman, Travis E; Yang, Eva; Driscoll, Timothy; Cole, Laura E; Sebra, Robert; Maqbool, Shahina B; Wattam, Alice R; Jacobs, William R.

mBio; 6(6): e01313-15, 2015 Nov 17.

Artículo en Inglés | MEDLINE | ID: mdl-26578674

10.

Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont.

Driscoll, Timothy; Gillespie, Joseph J; Nordberg, Eric K; Azad, Abdu F; Sobral, Bruno W.

Genome Biol Evol; 5(4): 621-45, 2013.

Artículo en Inglés | MEDLINE | ID: mdl-23475938

11.

Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life.

Gillespie, Joseph J; Williams, Kelly; Shukla, Maulik; Snyder, Eric E; Nordberg, Eric K; Ceraul, Shane M; Dharmanolla, Chitti; Rainey, Daphne; Soneja, Jeetendra; Shallom, Joshua M; Vishnubhat, Nataraj Dongre; Wattam, Rebecca; Purkayastha, Anjan; Czar, Michael; Crasta, Oswald; Setubal, Joao C; Azad, Abdu F; Sobral, Bruno S.

PLoS One; 3(4): e2018, 2008.

Artículo en Inglés | MEDLINE | ID: mdl-19194535

12.

Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis.

Tyler, Brett M; Tripathy, Sucheta; Zhang, Xuemin; Dehal, Paramvir; Jiang, Rays H Y; Aerts, Andrea; Arredondo, Felipe D; Baxter, Laura; Bensasson, Douda; Beynon, Jim L; Chapman, Jarrod; Damasceno, Cynthia M B; Dorrance, Anne E; Dou, Daolong; Dickerman, Allan W; Dubchak, Inna L; Garbelotto, Matteo; Gijzen, Mark; Gordon, Stuart G; Govers, Francine; Grunwald, Niklaus J; Huang, Wayne; Ivors, Kelly L; Jones, Richard W; Kamoun, Sophien; Krampis, Konstantinos; Lamour, Kurt H; Lee, Mi-Kyung; McDonald, W Hayes; Medina, Mónica; Meijer, Harold J G; Nordberg, Eric K; Maclean, Donald J; Ospina-Giraldo, Manuel D; Morris, Paul F; Phuntumart, Vipaporn; Putnam, Nicholas H; Rash, Sam; Rose, Jocelyn K C; Sakihama, Yasuko; Salamov, Asaf A; Savidor, Alon; Scheuring, Chantel F; Smith, Brian M; Sobral, Bruno W S; Terry, Astrid; Torto-Alalibo, Trudy A; Win, Joe; Xu, Zhanyou; Zhang, Hongbin.

Science; 313(5791): 1261-6, 2006 Sep 01.

Artículo en Inglés | MEDLINE | ID: mdl-16946064

13.

YODA: selecting signature oligonucleotides.

Nordberg, Eric K.

Bioinformatics; 21(8): 1365-70, 2005 Apr 15.

Artículo en Inglés | MEDLINE | ID: mdl-15572465

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