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Nowadays, the development of clean and green energy sources is the priority interest of research due to increasing global energy demand and extensive usage of fossil fuels, which create pollutants. Hydrogen has the highest energy density by weight among all chemical fuels. For the commercial-scale production of hydrogen, water electrolysis is the best method, which requires an efficient, cost-effective, and earth-abundant electrocatalyst. Recent studies have shown that the 2D Janus transition metal dichalcogenides (JTMDs) are promising materials for use as electrocatalysts and are highly effective for electrocatalytic H2 evolution reaction (HER). Here, we report a 2D monolayer WSeTe JTMD, which is highly effective toward HER. We have studied the electronic properties of 2D monolayer WSeTe JTMD using the periodic hybrid DFT-D method, and a direct electronic band gap of 2.39 eV was obtained. We have explored the HER pathways, mechanisms, and intermediates, including various transition state (TS) structures (Volmer TS, i.e., H*-migration TS, Heyrovsky TS, and Tafel TS) using a molecular cluster model of the subject JTMD noted as W10Se9Te12. The present calculations reveal that the 2D monolayer WSeTe JTMD is a potential electrocatalyst for HER. It has the lowest energy barriers for all the TSs among other TMDs. It has been shown that the Heyrovsky energy barrier (= 8.72 kcal mol-1) in the case of the Volmer-Heyrovsky mechanism is larger than the Tafel energy barrier (= 3.27 kcal mol-1) in the Volmer-Tafel mechanism. Hence, our present study suggests that the formation of H2 is energetically more favorable via the Volmer-Tafel mechanism. This study helps to shed light on the rational design of 2D single-layer JTMD, which is highly effective toward HER, and we expect that the present work can be further extended to other JTMDs to find out the improved electrocatalytic performance.
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The fuel cell is one of the solutions to current energy problems as it comes under green and renewable energy technology. The primary limitation of a fuel cell lies in the relatively slow rate of oxygen reduction reactions (ORR) that take place on the cathode, and this is an all-important reaction. An efficient electrocatalyst provides the advancement of green energy-based fuel cell technology, and it can speed up the ORR process. The present work provides the study of non-noble metal-based electrocatalyst for ORR. We have computationally designed a 3 × 3 supercell model of metal defective (Mo-defective) MoTe2 transition metal dichalcogenide (TMD) material to study its electrocatalytic activity toward ORR. This work provides a comprehensive analysis of all reaction intermediates that play a role in ORR on the surfaces of metal-deficient MoTe2. The first-principles-based dispersion-corrected density functional theory (in short DFT-D) method was implemented to analyze the reaction-free energies (ΔG) for each ORR reaction step. The present study indicates that the ORR on the surface of metal-defective MoTe2 follows the 4e- transfer mechanism. This study suggests that the 2D Mo-defective MoTe2 TMD has the potential to be an effective ORR electrocatalyst in fuel cells.
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The nuclear waste problem is one of the main interests of rare earth and actinide element chemistry. Studies of actinide-containing compounds are at the frontier of the applications of current theoretical methods due to the need to consider relativistic effects and approximations to the Dirac equation in them. Here, we employ four-component relativistic quantum calculations and scalar approximations to understand the contribution of f-type atomic orbitals in the chemical bonding of actinides (Ac) to organic ligands. We studied the relativistic quantum structure of an isostructural family made of Plutonium (Pu), Americium (Am), Californium (Cf), and Berkelium (Bk) atoms with the redox-active model ligand DOPO (2,4,6,8-tetra-tert-butyl-1-oxo-1H-phenoxazin-9-olate). Crystallographic structures were available to validate our calculations for all mentioned elements except for Cf. In short, state-of-the-art relativistic calculations were performed at different levels of theory to investigate the influence of relativistic and electron correlation effects on geometrical structures and bonding energies of Ac-DOPO3 complexes (Ac = Pu, Am, Cf, and Bk): (1) the scalar (sc) and spin-orbit (so) relativistic zeroth order regular approximation (ZORA) within the hybrid density functional theory (DFT) and (2) the four-component Dirac equation with both the Dirac-Hartree-Fock (4c-DHF) and Lévy-Leblond (LL) Hamiltonians. We show that sr- and so-ZORA-DFT could be used as efficient theoretical models to first approximate the geometry and electronic properties of actinides which are difficult to synthesize or characterize, but knowing that the higher levels of theory, like the 4c-DHF, give closer results to experiments. We also performed spin-free 4c calculations of geometric parameters for the Americium and Berkelium compounds. To the best of our knowledge, this is the first time that these kinds of large actinide compounds (the largest contains 67 atoms and 421 electrons) have been studied with highly accurate four-component methods (all-electron calculations with 6131 basis functions for the largest compound). We show that relativistic effects play a key role in the contribution of f-type atomic orbitals to the frontier orbitals of Ac-DOPO3 complexes. The analysis of the results obtained applying different theoretical schemes to calculate bonding energies is also given.
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Two-dimensional transition metal dichalcogenides (TMDs) are a new family of 2D materials with features that make them appealing for potential applications in nanomaterials science and engineering. Recently, these 2D TMDs have attracted significant research interest because of the abundant choice of materials with diverse and tunable electronic, optical, chemical, and electrocatalytic properties. Although, the edges of the 2D TMDs show excellent electrocatalytic performance, their basal plane (001) is inert, which hinders their industrial applications for electrocatalysis. Transition metal/chalcogen atom vacancies or doping with some other foreign atoms may be a remedy to activate the inert basal plane. Here, we have computationally designed 2D monolayer MoSe2 and studied its electronic properties with electrocatalytic activities. A Pt-atom has been doped in the pristine 2D MoSe2 (i.e., Pt-MoSe2) to activate the inert basal plane resulting in a zero band gap. This study reveals that the Pt-MoSe2 is an excellent bifunctional electrocatalyst for both the hydrogen evolution reaction (HER) and oxygen reduction reaction (ORR) with the aid of first priciples-based hybrid density functional theory (DFT). The periodic hybrid DFT method has been applied to compute the electronic properties of both the pristine MoSe2 and Pt-MoSe2. To determine both the HER and ORR mechanisms on the surface of the Pt-MoSe2 material, non-periodic DFT calculation has been performed by considering a molecular Pt1-Mo9Se21 cluster model. The present study shows that the 2D Pt-MoSe2 follows the Volmer-Heyrovsky mechanism for the HER with energy barriers of about 9.29 kcal mol-1 and 10.55 kcal mol-1 during the HË-migration and Heyrovsky reactions. The ORR is achieved by a four-electron transfer mechanism with the formation of two transition energy barriers of about 14.94 kcal mol-1 and 11.10 kcal mol-1, respectively. The lower energy barriers and high turnover frequency during the reactions expose that the Pt-MoSe2 can be adopted as an efficient bifunctional electrocatalyst for both the HER and ORR. The present studies demonstrate that the exceptional HER and ORR activity and stability performance shown by the MoSe2 electrocatalyst can be enhanced by Pt-doping, opening a promising concept for the sensible design of high-performance catalysts for H2 production and O2 reduction.
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The oxygen reduction reaction (ORR) is an indispensable reaction in electrochemical energy converting systems such as fuel cells. Generally, reaction kinetics of the ORR is slow, and to speed it up, a practical electrocatalyst is needed. Pt-based catalysts are thermodynamically more appropriate, but due to their scarcity and high cost, they cannot be used on a commercial scale in industries. To search for non-noble metal catalysts, we have performed a theoretical study on the CsPbBr3 perovskite material as a potential candidate for the ORR. The 3D bulk crystal structure of CsPbBr3 shows a large electronic band gap (Eg) of around 2.95 eV and it cannot be used as an efficient electrocatalyst for the ORR. We have cleaved a (001) surface from the 3D CsPbBr3 perovskite and computationally designed a 2D monolayer slab structure of the CsPbBr3 material. The present study showed that the 2D monolayer structure of CsPbBr3 has a tiny band gap about 0.22 eV, and hence the 2D monolayer CsPbBr3 perovskite can be used as a cathode material for fuel cell applications. Special priority has been given to the 2D layered perovskite structure to gain insights into its ORR kinetics by employing the first principles-based density functional theory (DFT) method. This study reveals that the basal plane of the 2D CsPbBr3 perovskite exhibits excellent electrocatalytic activity toward the ORR with a four-electron reduction pathway selectivity. Both the dissociative and associative reaction mechanisms of the ORR on the surfaces of the 2D monolayer CsPbBr3 perovskite have been explored by computing the change in Gibb's free energy (ΔG). All the reaction intermediates studied here are thermodynamically favorable and the present study suggests that the ORR follows a 4e- transfer mechanism on the surface of 2D CsPbBr3 and the associative mechanism is favorable over the dissociative mechanism of the ORR. This study provides a theoretical basis for future application of 2D CsPbBr3 perovskite-based electrocatalysts for achieving an effective ORR, indicating that they are promising Pt-free candidates for fuel cell components.
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Solid-state thermoelastic behavior-a sudden exertion of an expansive or contractive physical force following a temperature change and phase transition in a solid-state compound-is rare in organic crystals, few are reversible systems, and most of these are limited to a dozen or so cycles before the crystal degrades or they reverse slowly over the course of many minutes or even hours. Comparable to thermosalience, wherein crystal phase changes induce energetic jumping, thermomorphism produces physical work via consistent and near-instantaneous predictable directional force. In this work, we show a fully reversible thermomorphic actuator that is stable at room temperature for multiple years and is capable of actuation for more than 200 cycles at near-ambient temperature. Specifically, the crystals shrink to 90% of their original length instantaneously upon heating beyond 45 °C and expand back to their original length upon cooling below 35 °C. Furthermore, the phase transition occurs instantaneously, with little obvious hysteresis, allowing us to create real-time actuating thermal fuses that cycle between on and off rapidly.
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Two-dimensional (2D) monolayer pristine MoS2 transition metal dichalcogenide (TMD) is the most studied material because of its potential applications as nonprecious electrocatalyst for the hydrogen evolution reaction (HER). Previous studies have shown that the basal planes of 2D MoS2 are catalytically inert, and hence it cannot be used directly in desired applications such as electrochemical HER in industry. Here, we thoroughly studied a defect-engineered Mn-doped 2D monolayer MoS2 (Mn-MoS2) material, where Mn was doped in pristine MoS2 to activate its inert basal planes. Using the density functional theory (DFT) method, we performed rigorous inspection of the electronic structures and properties of the 2D monolayer Mn-MoS2 as a promising alternative to noble metal-free catalyst for effective HER. A periodic 2D slab of monolayer Mn-MoS2 was created to study the electronic properties (such as band gap, band structures and total density of states (DOS)) and the reaction pathways occurring on the surface of this material. The detailed HER mechanism was explored by creating an Mn1Mo9S21 non-periodic finite molecular cluster model system using the M06-L DFT method including solvation effects to determine the reaction barriers and kinetics. Our study revealed that the 2D Mn-MoS2 follows the most favorable Volmer-Heyrovsky reaction mechanism with a very low energy barrier during H2 evolution. It was found that the change in the free energy barrier (ΔG) during the HË-migration (i.e., Volmer) and Heyrovsky reactions is about 10.34-10.79 kcal mol-1 (computed in the solvent phase), indicating that this material is an exceptional electrocatalyst for the HER. The Tafel slope (y) was lower in the case of the 2D monolayer Mn-MoS2 material due to the overlap of the s-orbital of hydrogen and d-orbitals of the Mn atoms in the HOMO and LUMO transition states (TS1 and TS2) of both the Volmer and Heyrovsky reaction steps, respectively. The better stabilization of the atomic orbitals in the HER rate-limiting step Heyrovsky TS2 is the key for reducing the reaction barrier, and thus the overall catalysis, indicating a better electrocatalytic performance for H2 evolution. This study focused on designing low-cost and efficient electrocatalysts for the HER using earth abundant transition metal dichalcogenides (TMDs) and decreasing the activation energy barriers by scrutinizing the kinetics of the reaction to achieve high reactivity.
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Ruthenium-based metallotherapeutics is an interesting alternative for platinum complexes acting as anticancer agents after the entry of KP1019, NAMI-A, and TLD1339 in clinical trials. Herein, we have synthesized three new arene ruthenium(II)-tetrazole complexes viz. [Ru2(η6-p-cymene)2(2-pytz)2Cl2] (1), [Ru2(η6-p-cymene)2(3-pytz)Cl3] (2), [Ru2(η6-p-cymene)2(4-pytz)Cl3] (3) [2-pytzH = 2-pyridyl tetrazole; 3-pytzH = 3-pyridyl tetrazole; 4-pytzH = 4-pyridyl tetrazole] which have been characterized by different analytical techniques. To aid the understanding of the complex formation, reactions of the arene ruthenium(II) dimer with tetrazoles were investigated using the first principles-based Density Functional Theory (DFT) B3LYP method. Electronic structures, equilibrium geometries of the reactants and products with the first-order saddle points, reactions mechanism, the changes of enthalpy (∆H) and free energy (∆G), chemical stability, and reaction barriers of the complexes were computed using the B3LYP DFT approach. The in vitro cytotoxicity of these complexes was investigated by MTT assay on different cancer cell lines which reveal complex 2 as the most significant cytotoxic agent toward the HeLa cell line. The complexes have also shown a strong binding affinity towards CT-DNA and albumin proteins (HSA and BSA) as analyzed through spectroscopic techniques. Investigation of the mechanism of cell death by complex 2 was further performed by various staining techniques, flow cytometry, and gene expression analysis by RT-PCR. Inhibition of cell migration study has been also revealed the possibility of complex 2 to act as a prospective anti-metastatic agent.
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Antineoplásicos/farmacología , Complejos de Coordinación/farmacología , Antineoplásicos/síntesis química , Antineoplásicos/química , Apoptosis/efectos de los fármacos , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Complejos de Coordinación/síntesis química , Complejos de Coordinación/química , Ensayos de Selección de Medicamentos Antitumorales , Humanos , Rutenio/química , Rutenio/farmacología , Tetrazoles/química , Tetrazoles/farmacología , Cicatrización de Heridas/efectos de los fármacosRESUMEN
An isostructural family of f-element compounds (Ce, Nd, Sm, Gd; Am, Bk, Cf) of the redox-active dioxophenoxazine ligand (DOPOq; DOPO = 2,4,6,8-tetra- tert-butyl-1-oxo-1 H-phenoxazin-9-olate) was prepared. This family, of the form M(DOPOq)3, represents the first nonaqueous isostructural series, including the later actinides berkelium and californium. The lanthanide derivatives were fully characterized using 1H NMR spectroscopy and SQUID magnetometry, while all species were structurally characterized by X-ray crystallography and electronic absorption spectroscopy. In order to probe the electronic structure of this new family, CASSCF calculations were performed and revealed these systems to be largely ionic in contrast to previous studies, where berkelium and californium typically have a small degree of covalent character. To validate the zeroth order regular approximation (ZORA) method, the same CASSCF analysis using experimental structures versus UDFT-ZORA optimized structures does not exhibit sizable changes in bonding patterns. This shows that UDFT-ZORA combined with CASSCF could be a useful first approximation to predict and investigate the structure and electronic properties of actinides and lanthanides that are difficult to synthesize or characterize.
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Covalent-organic frameworks (COFs) have emerged as an important class of nano-porous crystalline materials with many potential applications. They are intriguing platforms for the design of porous skeletons with special functionality at the molecular level. However, despite their extraordinary structural tunability, it is difficult to control their electronic properties, thus hindering the potential implementation in electronic devices. A new family of nanoporous materials, COFs intercalated with first row transition metals, is proposed to address this fundamental drawback - the lack of electronic tunability. Using first-principles calculations, we designed 31 new COF materials in silico by intercalating all of the first row transition metals (TMs) with boroxine-linked and triazine-linked COFs: COF-TM-x (where TM = Sc-Zn and x = 3-5). We investigated their structure and electronic properties. Specifically, we predict that the band gap and density of states (DOS) of COFs can be controlled by intercalating first row transition metal atoms (TM: Sc-Zn) and fine tuned by the concentration of TMs. We also found that the d-subshell electron density of the TMs plays a main role in determining the electronic properties of the COFs. Thus intercalated-COFs provide a new strategy to control the electronic properties of materials within a porous network. This work opens up new avenues for the design of TM-intercalated materials with promising future applications in nanoporous electronic devices, where a high surface area coupled with fine-tuned electronic properties is desired.
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Advancing beyond Li-ion batteries requires translating the beneficial characteristics of Li+ electrodes to attractive, yet incipient, candidates such as those based on K+ intercalation. Here, we use ultrathin few-layer graphene (FLG) electrodes as a model interface to show a dramatic enhancement of K+ intercalation performance through a simple conditioning of the solid-electrolyte interphase (SEI) in a Li+ containing electrolyte. Unlike the substantial plating occurring in K+ containing electrolytes, we found that a Li+ based SEI enabled efficient K+ intercalation with discrete staging-type phase transitions observed via cyclic voltammetry at scan rates up to 100 mVs-1 and confirmed as ion-intercalation processes through in situ Raman spectroscopy. The resulting interface yielded fast charge-discharge rates up to â¼360C (1C is fully discharge in 1 h) and remarkable long-term cycling stability at 10C for 1000 cycles. This SEI promoted the transport of K+ as verified via mass spectrometric depth profiling. This work introduces a convenient strategy for improving the performance of ion intercalation electrodes toward a practical K-ion battery and FLG electrodes as a powerful analytical platform for evaluating fundamental aspects of ion intercalation.
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The tetraaza [CoIIN4H]2+ complex (1) is remarkable for its ability to selectively reduce CO2 to CO with 45% Faradaic efficiency and a CO to H2 ratio of 3 : 2. We employ density functional theory (DFT) to determine the reasons behind the unusual catalytic properties of 1 and the most likely mechanism for CO2 reduction. The selectivity for CO2 over proton reduction is explained by analyzing the catalyst's affinity for the possible ligands present under typical reaction conditions: acetonitrile, water, CO2, and bicarbonate. After reduction of the catalyst by two electrons, formation of [CoIN4H]+-CO2- is strongly favored. Based on thermodynamic and kinetic data, we establish that the only likely route for producing CO from here consists of a protonation step to yield [CoIN4H]+-CO2H, followed by reaction with CO2 to form [CoIIN4H]2+-CO and bicarbonate. This conclusion corroborates the idea of a direct role of CO2 as a Lewis acid to assist in C-O bond dissociation, a conjecture put forward by other authors to explain recent experimental observations. The pathway to formic acid is predicted to be forbidden by high activation barriers, in accordance with the products that are known to be generated by 1. Calculated physical observables such as standard reduction potentials and the turnover frequency for our proposed catalytic cycle are in agreement with available experimental data reported in the literature. The mechanism also makes a prediction that may be experimentally verified: that the rate of CO formation should increase linearly with the partial pressure of CO2.
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Bilayer graphene (BLG) is a semiconductor whose band gap and properties can be tuned by various methods such as doping or applying gate voltage. Here, we show how to tune electronic properties of BLG by intercalation of transition metal (TM) atoms between two monolayer graphene (MLG) using a novel dispersion-corrected first-principle density functional theory (DFT) approach. We intercalated V, Nb, and Ta atoms between two MLG. We found that the symmetry, the spin, and the concentration of TM atoms in BLG-intercalated materials are the important parameters to control and to obtain a Dirac cone in their band structures. Our study reveals that the BLG intercalated with one vanadium (V) atom, BLG-1V, has a Dirac cone at the K-point. In all the cases, the present DFT calculations show that the 2pz sub-shells of C atoms in graphene and the 3dyz sub-shells of the TM atoms provide the electron density near the Fermi energy level (EF) which controls the material properties. Thus, we show that out-of-plane atoms can influence in-plane electronic densities in BLG and enumerate the conditions necessary to control the Dirac point. This study offers insight into the physical properties of 2D BLG intercalated materials and presents a new strategy for controlling the electronic properties of BLG through TM intercalation by varying the concentration and spin arrangement of the metals resulting in various conducting properties, which include: metal, semi-metal and semiconducting states.
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Acrolein is an important unsaturated hydrocarbon, containing both CâO and CâC bonds, and responsible for atmospheric pollution. A recent study of major reactions of CH with acrolein has been supplemented with computations of other reactions of the system. Similar to the previous approach, the quantum Monte Carlo (QMC) method in the accurate diffusion Monte Carlo (DMC) method was implemented. Single determinant wave functions were used as trial functions for the random walks. Rate coefficients and product branching ratios were computed by solving master equations using the MultiWell software suite. At room temperature, the dominant product channels are 2-methylvinyl + CO (P6), 1,3-butadienal + H (P2), and furan + H (P1). At elevated temperatures, 2,3-butadienal + H (P10) is also a major product. The chain decomposition pathway to form C3H4 + HCO was not competitive with the cyclization pathway at any of the temperatures studied. The DMC branching fractions of the products formed in the subject reaction are in reasonable accord with previous experimental and theoretical values. The computed rate coefficients were found to be independent of pressure at temperatures relevant to combustion (1500-2500 K).
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To assist understanding of combustion processes, we have investigated reactions of methylidyne (CH) with acrolein (CH2CHCHO) using the quantum Monte Carlo (QMC) and other computational methods. We present a theoretical study of the major reactions reported in a recent experiment on the subject system. Both DFT and MP2 computations are carried out, and the former approach is used to form the independent-particle part of the QMC trial wave function used in the diffusion Monte Carlo (DMC) variant of the QMC method. In agreement with experiment, we find that the dominant product channel leads to formation of C4H4O systems + H with leading products of furan + H and 1,3-butadienal + H. Equilibrium geometries, atomization energies, reaction barriers, transition states, and heats of reaction are computed using the DFT, MP2, and DMC approaches and compared to experiment. We find that DMC results are in close agreement with experiment. The kinetics of the subject reactions are determined by solving master equations with the MultiWell software suite.
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Acroleína/química , Alquenos/química , Teoría Cuántica , Método de Montecarlo , TermodinámicaRESUMEN
The development of high-activity and low-price cathodic catalysts to facilitate the electrochemically sluggish O2 reduction reaction (ORR) is very important to achieve the commercial application of fuel cells. Here, we have investigated the electrocatalytic activity of the two-dimensional single-layer Nb-doped zirconium diselenide (2D Nb-ZrSe2) toward ORR by employing the dispersion corrected density functional theory (DFT-D) method. Through our study, we computed structural properties, electronic properties, and energetics of the 2D Nb-ZrSe2 and ORR intermediates to analyze the electrocatalytic performance of 2D Nb-ZrSe2. The electronic property calculations depict that the 2D monolayer ZrSe2 has a large band gap of 1.48 eV, which is not favorable for the ORR mechanism. After the doping of Nb, the electronic band gap vanishes, and 2D Nb-ZrSe2 acts as a conductor. We studied both the dissociative and the associative pathways through which the ORR can proceed to reduce the oxygen molecule (O2). Our results show that the more favorable path for O2 reduction on the surface of the 2D Nb-ZrSe2 is the 4e- associative path. The detailed ORR mechanisms (both associated and dissociative) have been explored by computing the changes in Gibbs free energy (ΔG). All of the ORR reaction intermediate steps are thermodynamically stable and energetically favorable. The free energy profile for the associative path shows the downhill behavior of the free energy vs the reaction steps, suggesting that all ORR intermediate structures are catalytically active for the 4e- associative path and a high 4e- reduction pathway selectivity. Therefore, 2D Nb-ZrSe2 is a promising catalyst for the ORR, which can be used as an alternative ORR catalyst compared to expensive platinum (Pt).
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Bioinspired, self-assembled hybrid materials show great potential in the field of energy conversion. Here, we have prepared a sonication-induced boladipeptide (HO-YF-AA-FY-OH (PBFY); AA = Adipic acid, F = l-phenylalanine, and Y = l-tyrosine) and an anchored, self-assembled nickel-based coordinated polymeric nanohybrid hydrogel (Ni-PBFY). The morphological studies of hydrogels PBFY and Ni-PBFY exhibit nanofibrillar network structures. XPS analysis has been used to study the self-assembled coordinated polymeric hydrogel Ni-PBFY-3, with the aim of identifying its chemical makeup and electronic state. XANES and EXAFS analyses have been used to examine the local electronic structure and coordination environment of Ni-PBFY-3. The xerogel of Ni-PBFY was used to fabricate the electrodes and is utilized in the OER (oxygen evolution reaction). The native hydrogel (PBFY) contains a gelator boladipeptide of 15.33 mg (20 mmol L-1) in a final volume of 1 mL. The metallo-hydrogel (Ni-PBFY-3) is prepared by combining 15.33 mg (20 mmol L-1) of boladipeptide (PBFY) with 3 mg (13 mmol L-1) of NiCl2·6H2O metal in a final volume of 1 mL. It displays an ultralow Tafel slope of 74 mV dec-1 and a lower overpotential of 164 mV at a 10 mA cm-2 current density in a 1 M KOH electrolyte, compared to other electrocatalysts under the same experimental conditions. Furthermore, the Ni-PBFY-3 electrocatalyst has been witnessed to be highly stable during 100 h of chronopotentiometry performance. To explore the OER mechanism in an alkaline medium, a theoretical calculation was carried out by employing the first-principles-based density functional theory (DFT) method. The computed results obtained by the DFT method further confirm that the Ni-PBFY-3 electrocatalyst has a high intrinsic activity toward the OER, and the value of overpotential obtained from the present experiment agrees well with the computed value of the overpotential. The biomolecule-assisted electrocatalytic results provide a new approach for designing efficient electrocatalysts, which could have significant implications in the field of green energy conversion.
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The binding properties of a series of benzenesulfonamide inhibitors (4-substituted-ureido-benzenesulfonamides, UBSAs) of human carbonic anhydrase II (hCA II) enzyme with active site residues have been studied using a hybrid quantum mechanical/molecular mechanical (QM/MM) model. To account for the important docking interactions between the UBSAs ligand and hCA II enzyme, a molecular docking program AutoDock Vina is used. The molecular docking results obtained by AutoDock Vina revealed that the docked conformer has root mean square deviation value less than 1.50 Å compared to X-ray crystal structures. The inhibitory activity of UBSA ligands against hCA II is found to be in good agreement with the experimental results. The thermodynamic parameters for inhibitor binding show that hydrogen bonding, hydrophilic, and hydrophobic interactions play a major role in explaining the diverse inhibitory range of these derivatives. Additionally, natural bond orbital analysis is performed to characterize the ligand-metal charge transfer stability. The insights gained from this study have great potential to design new hCA-II inhibitor, 4-[3-(1-p-Tolyl-4-trifluoromethyl-1H-pyrazol-3-yl)-ureido]-benzenesulfonamide, which belongs to the family of UBSA inhibitors and shows similar type of inhibitor potency with hCA II. This work also reveals that a QM/MM model and molecular docking method are computationally feasible and accurate for studying substrate-protein inhibition.
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Anhidrasa Carbónica II/antagonistas & inhibidores , Inhibidores de Anhidrasa Carbónica/farmacología , Teoría Cuántica , Sulfonamidas/farmacología , Anhidrasa Carbónica II/metabolismo , Inhibidores de Anhidrasa Carbónica/química , Cristalografía por Rayos X , Humanos , Ligandos , Modelos Moleculares , Estructura Molecular , Relación Estructura-Actividad , Sulfonamidas/química , Termodinámica , BencenosulfonamidasRESUMEN
trans-2-Chlorovinyldichloroarsine (lewisite, L agent, Lew-I) acts as a blistering agents. British anti-lewisite (BAL, 2,3-dimercaptopropanol) has long been used as an L-agent antidote. The main reaction channels for the detoxification proceed via breaking of As-Cl bonds and formation of As-S bonds, producing stable, nontoxic ring product [(2-methyl-1,3,2-dithiarsolan-4-yl)methanol]. M06-2X/GENECP calculations have been carried out to establish the enhanced rate of detoxification mechanism in the presence of NH3 and H2O catalysts in both gas and solvent phases, which has been modeled by use of the polarized continuum model (PCM). In addition, natural bond orbital (NBO) and atoms in molecules (AIM) analysis have been performed to characterize the intermolecular hydrogen bonding in the transition states. Transition-state theory (TST) calculation establishes that the rates of NH3-catalyzed (2.88 × 10(-11) s(-1)) and H2O-catalyzed (2.42 × 10(-11) s(-1)) reactions are reasonably faster than the uncatalyzed detoxification (5.44 × 10(-13) s(-1)). The results obtained by these techniques give new insight into the mechanism of the detoxification process, identification and thermodynamic characterization of the relevant stationary species, the proposal of alternative paths on modeled potential energy surfaces for uncatalyzed reaction, and the rationalization of the mechanistic role played by catalysts and solvents.