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1.

Cancer stemness, intratumoral heterogeneity, and immune response across cancers.

Miranda, Alex; Hamilton, Phineas T; Zhang, Allen W; Pattnaik, Swetansu; Becht, Etienne; Mezheyeuski, Artur; Bruun, Jarle; Micke, Patrick; de Reynies, Aurélien; Nelson, Brad H.

Proc Natl Acad Sci U S A; 116(18): 9020-9029, 2019 04 30.

Artículo en Inglés | MEDLINE | ID: mdl-30996127

2.

SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.

Pattnaik, Swetansu; Gupta, Saurabh; Rao, Arjun A; Panda, Binay.

BMC Bioinformatics; 15: 40, 2014 Feb 05.

Artículo en Inglés | MEDLINE | ID: mdl-24495296

3.

N-MYC impairs innate immune signaling in high-grade serous ovarian carcinoma.

Miranda, Alex; Pattnaik, Swetansu; Hamilton, Phineas T; Fuss, Monica Alvaro; Kalaria, Shreena; Laumont, Céline M; Smazynski, Julian; Mesa, Monica; Banville, Allyson; Jiang, Xinpei; Jenkins, Russell; Cañadas, Israel; Nelson, Brad H.

Sci Adv; 10(20): eadj5428, 2024 May 17.

Artículo en Inglés | MEDLINE | ID: mdl-38748789

4.

Heritable defects in telomere and mitotic function selectively predispose to sarcomas.

Ballinger, Mandy L; Pattnaik, Swetansu; Mundra, Piyushkumar A; Zaheed, Milita; Rath, Emma; Priestley, Peter; Baber, Jonathan; Ray-Coquard, Isabelle; Isambert, Nicholas; Causeret, Sylvain; van der Graaf, Winette T A; Puri, Ajay; Duffaud, Florence; Le Cesne, Axel; Seddon, Beatrice; Chandrasekar, Coonoor; Schiffman, Joshua D; Brohl, Andrew S; James, Paul A; Kurtz, Jean-Emmanuel; Penel, Nicolas; Myklebost, Ola; Meza-Zepeda, Leonardo A; Pickett, Hilda; Kansara, Maya; Waddell, Nicola; Kondrashova, Olga; Pearson, John V; Barbour, Andrew P; Li, Shuai; Nguyen, Tuong L; Fatkin, Diane; Graham, Robert M; Giannoulatou, Eleni; Green, Melissa J; Kaplan, Warren; Ravishankar, Shyamsundar; Copty, Joseph; Powell, Joseph E; Cuppen, Edwin; van Eijk, Kristel; Veldink, Jan; Ahn, Jin-Hee; Kim, Jeong Eun; Randall, R Lor; Tucker, Kathy; Judson, Ian; Sarin, Rajiv; Ludwig, Thomas; Genin, Emmanuelle.

Science; 379(6629): 253-260, 2023 01 20.

Artículo en Inglés | MEDLINE | ID: mdl-36656928

5.

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica.

Krishnan, Neeraja M; Pattnaik, Swetansu; Jain, Prachi; Gaur, Prakhar; Choudhary, Rakshit; Vaidyanathan, Srividya; Deepak, Sa; Hariharan, Arun K; Krishna, Pg Bharath; Nair, Jayalakshmi; Varghese, Linu; Valivarthi, Naveen K; Dhas, Kunal; Ramaswamy, Krishna; Panda, Binay.

BMC Genomics; 13: 464, 2012 Sep 09.

Artículo en Inglés | MEDLINE | ID: mdl-22958331

6.

Targeted gene panels identify a high frequency of pathogenic germline variants in patients diagnosed with a hematological malignancy and at least one other independent cancer.

Singhal, Deepak; Hahn, Christopher N; Feurstein, Simone; Wee, Li Yan A; Moma, Luke; Kutyna, Monika M; Chhetri, Rakchha; Eshraghi, Leila; Schreiber, Andreas W; Feng, Jinghua; Wang, Paul P-S; Babic, Milena; Parker, Wendy T; Gao, Song; Moore, Sarah; Das, Soma; Thomas, David; Pattnaik, Swetansu; Brown, Anna L; D'Andrea, Richard J; Poplawski, Nicola K; Thomas, Daniel; Scott, Hamish S; Godley, Lucy A; Hiwase, Devendra K.

Leukemia; 35(11): 3245-3256, 2021 11.

Artículo en Inglés | MEDLINE | ID: mdl-33850299

7.

Multiple ABCB1 transcriptional fusions in drug resistant high-grade serous ovarian and breast cancer.

Christie, Elizabeth L; Pattnaik, Swetansu; Beach, Jessica; Copeland, Anthony; Rashoo, Nineveh; Fereday, Sian; Hendley, Joy; Alsop, Kathryn; Brady, Samuel L; Lamb, Greg; Pandey, Ahwan; deFazio, Anna; Thorne, Heather; Bild, Andrea; Bowtell, David D L.

Nat Commun; 10(1): 1295, 2019 03 20.

Artículo en Inglés | MEDLINE | ID: mdl-30894541

8.

Reversion of BRCA1/2 Germline Mutations Detected in Circulating Tumor DNA From Patients With High-Grade Serous Ovarian Cancer.

Christie, Elizabeth L; Fereday, Sian; Doig, Ken; Pattnaik, Swetansu; Dawson, Sarah-Jane; Bowtell, David D L.

J Clin Oncol; 35(12): 1274-1280, 2017 Apr 20.

Artículo en Inglés | MEDLINE | ID: mdl-28414925

9.

Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence.

Krishnan, Neeraja; Gupta, Saurabh; Palve, Vinayak; Varghese, Linu; Pattnaik, Swetansu; Jain, Prach; Khyriem, Costerwell; Hariharan, Arun; Dhas, Kunal; Nair, Jayalakshmi; Pareek, Manisha; Prasad, Venkatesh; Siddappa, Gangotri; Suresh, Amritha; Kekatpure, Vikram; Kuriakose, Moni; Panda, Binay.

F1000Res; 4: 1215, 2015.

Artículo en Inglés | MEDLINE | ID: mdl-26834999

10.

Customisation of the exome data analysis pipeline using a combinatorial approach.

Pattnaik, Swetansu; Vaidyanathan, Srividya; Pooja, Durgad G; Deepak, Sa; Panda, Binay.

PLoS One; 7(1): e30080, 2012.

Artículo en Inglés | MEDLINE | ID: mdl-22238694

11.

Re-engineering an in-vitro evolved ribozyme.

Pattnaik, Swetansu B; Suga, Hiroaki.

Nucleic Acids Symp Ser (Oxf); (51): 381-2, 2007.

Artículo en Inglés | MEDLINE | ID: mdl-18029746

12.

Reduction of an aldehyde by a NADH/Zn2+ -dependent redox active ribozyme.

Tsukiji, Shinya; Pattnaik, Swetansu B; Suga, Hiroaki.

J Am Chem Soc; 126(16): 5044-5, 2004 Apr 28.

Artículo en Inglés | MEDLINE | ID: mdl-15099068

13.

An alcohol dehydrogenase ribozyme.

Tsukiji, Shinya; Pattnaik, Swetansu B; Suga, Hiroaki.

Nat Struct Biol; 10(9): 713-7, 2003 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-12910259

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