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1.

Morphological diversity of single neurons in molecularly defined cell types.

Peng, Hanchuan; Xie, Peng; Liu, Lijuan; Kuang, Xiuli; Wang, Yimin; Qu, Lei; Gong, Hui; Jiang, Shengdian; Li, Anan; Ruan, Zongcai; Ding, Liya; Yao, Zizhen; Chen, Chao; Chen, Mengya; Daigle, Tanya L; Dalley, Rachel; Ding, Zhangcan; Duan, Yanjun; Feiner, Aaron; He, Ping; Hill, Chris; Hirokawa, Karla E; Hong, Guodong; Huang, Lei; Kebede, Sara; Kuo, Hsien-Chi; Larsen, Rachael; Lesnar, Phil; Li, Longfei; Li, Qi; Li, Xiangning; Li, Yaoyao; Li, Yuanyuan; Liu, An; Lu, Donghuan; Mok, Stephanie; Ng, Lydia; Nguyen, Thuc Nghi; Ouyang, Qiang; Pan, Jintao; Shen, Elise; Song, Yuanyuan; Sunkin, Susan M; Tasic, Bosiljka; Veldman, Matthew B; Wakeman, Wayne; Wan, Wan; Wang, Peng; Wang, Quanxin; Wang, Tao.

Nature; 598(7879): 174-181, 2021 10.

Artículo en Inglés | MEDLINE | ID: mdl-34616072

2.

A guide to the BRAIN Initiative Cell Census Network data ecosystem.

Hawrylycz, Michael; Martone, Maryann E; Ascoli, Giorgio A; Bjaalie, Jan G; Dong, Hong-Wei; Ghosh, Satrajit S; Gillis, Jesse; Hertzano, Ronna; Haynor, David R; Hof, Patrick R; Kim, Yongsoo; Lein, Ed; Liu, Yufeng; Miller, Jeremy A; Mitra, Partha P; Mukamel, Eran; Ng, Lydia; Osumi-Sutherland, David; Peng, Hanchuan; Ray, Patrick L; Sanchez, Raymond; Regev, Aviv; Ropelewski, Alex; Scheuermann, Richard H; Tan, Shawn Zheng Kai; Thompson, Carol L; Tickle, Timothy; Tilgner, Hagen; Varghese, Merina; Wester, Brock; White, Owen; Zeng, Hongkui; Aevermann, Brian; Allemang, David; Ament, Seth; Athey, Thomas L; Baker, Cody; Baker, Katherine S; Baker, Pamela M; Bandrowski, Anita; Banerjee, Samik; Bishwakarma, Prajal; Carr, Ambrose; Chen, Min; Choudhury, Roni; Cool, Jonah; Creasy, Heather; D'Orazi, Florence; Degatano, Kylee; Dichter, Benjamin.

PLoS Biol; 21(6): e3002133, 2023 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-37390046

3.

Cross-modal coherent registration of whole mouse brains.

Qu, Lei; Li, Yuanyuan; Xie, Peng; Liu, Lijuan; Wang, Yimin; Wu, Jun; Liu, Yu; Wang, Tao; Li, Longfei; Guo, Kaixuan; Wan, Wan; Ouyang, Lei; Xiong, Feng; Kolstad, Anna C; Wu, Zhuhao; Xu, Fang; Zheng, Yefeng; Gong, Hui; Luo, Qingming; Bi, Guoqiang; Dong, Hongwei; Hawrylycz, Michael; Zeng, Hongkui; Peng, Hanchuan.

Nat Methods; 19(1): 111-118, 2022 01.

Artículo en Inglés | MEDLINE | ID: mdl-34887551

4.

Automated segmentation and recognition of C. elegans whole-body cells.

Li, Yuanyuan; Lai, Chuxiao; Wang, Meng; Wu, Jun; Li, Yongbin; Peng, Hanchuan; Qu, Lei.

Bioinformatics; 2024 May 22.

Artículo en Inglés | MEDLINE | ID: mdl-38775410

5.

Tracing weak neuron fibers.

Liu, Yufeng; Zhong, Ye; Zhao, Xuan; Liu, Lijuan; Ding, Liya; Peng, Hanchuan.

Bioinformatics; 39(1)2023 01 01.

Artículo en Inglés | MEDLINE | ID: mdl-36571479

6.

Analysis of cell fate from single-cell gene expression profiles in C. elegans.

Liu, Xiao; Long, Fuhui; Peng, Hanchuan; Aerni, Sarah J; Jiang, Min; Sánchez-Blanco, Adolfo; Murray, John I; Preston, Elicia; Mericle, Barbara; Batzoglou, Serafim; Myers, Eugene W; Kim, Stuart K.

Cell; 139(3): 623-33, 2009 Oct 30.

Artículo en Inglés | MEDLINE | ID: mdl-19879847

7.

Image enhancement to leverage the 3D morphological reconstruction of single-cell neurons.

Guo, Shuxia; Zhao, Xuan; Jiang, Shengdian; Ding, Liya; Peng, Hanchuan.

Bioinformatics; 38(2): 503-512, 2022 01 03.

Artículo en Inglés | MEDLINE | ID: mdl-34515755

8.

mBrainAligner-Web: a web server for cross-modal coherent registration of whole mouse brains.

Li, Yuanyuan; Wu, Jun; Lu, Donghuan; Xu, Chao; Zheng, Yefeng; Peng, Hanchuan; Qu, Lei.

Bioinformatics; 38(19): 4654-4655, 2022 09 30.

Artículo en Inglés | MEDLINE | ID: mdl-35951750

9.

A mesoscale connectome of the mouse brain.

Oh, Seung Wook; Harris, Julie A; Ng, Lydia; Winslow, Brent; Cain, Nicholas; Mihalas, Stefan; Wang, Quanxin; Lau, Chris; Kuan, Leonard; Henry, Alex M; Mortrud, Marty T; Ouellette, Benjamin; Nguyen, Thuc Nghi; Sorensen, Staci A; Slaughterbeck, Clifford R; Wakeman, Wayne; Li, Yang; Feng, David; Ho, Anh; Nicholas, Eric; Hirokawa, Karla E; Bohn, Phillip; Joines, Kevin M; Peng, Hanchuan; Hawrylycz, Michael J; Phillips, John W; Hohmann, John G; Wohnoutka, Paul; Gerfen, Charles R; Koch, Christof; Bernard, Amy; Dang, Chinh; Jones, Allan R; Zeng, Hongkui.

Nature; 508(7495): 207-14, 2014 Apr 10.

Artículo en Inglés | MEDLINE | ID: mdl-24695228

10.

Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience.

Heckscher, Ellie S; Long, Fuhui; Layden, Michael J; Chuang, Chein-Hui; Manning, Laurina; Richart, Jourdain; Pearson, Joseph C; Crews, Stephen T; Peng, Hanchuan; Myers, Eugene; Doe, Chris Q.

Development; 141(12): 2524-32, 2014 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-24917506

11.

Deep models for brain EM image segmentation: novel insights and improved performance.

Fakhry, Ahmed; Peng, Hanchuan; Ji, Shuiwang.

Bioinformatics; 32(15): 2352-8, 2016 08 01.

Artículo en Inglés | MEDLINE | ID: mdl-27153603

12.

Bioimage Informatics for Big Data.

Peng, Hanchuan; Zhou, Jie; Zhou, Zhi; Bria, Alessandro; Li, Yujie; Kleissas, Dean Mark; Drenkow, Nathan G; Long, Brian; Liu, Xiaoxiao; Chen, Hanbo.

Adv Anat Embryol Cell Biol; 219: 263-72, 2016.

Artículo en Inglés | MEDLINE | ID: mdl-27207370

13.

LittleQuickWarp: an ultrafast image warping tool.

Qu, Lei; Peng, Hanchuan.

Methods; 73: 38-42, 2015 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-25233807

14.

Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction.

Gonzalez-Bellido, Paloma T; Peng, Hanchuan; Yang, Jinzhu; Georgopoulos, Apostolos P; Olberg, Robert M.

Proc Natl Acad Sci U S A; 110(2): 696-701, 2013 Jan 08.

Artículo en Inglés | MEDLINE | ID: mdl-23213224

15.

Automatic tracing of ultra-volumes of neuronal images.

Peng, Hanchuan; Zhou, Zhi; Meijering, Erik; Zhao, Ting; Ascoli, Giorgio A; Hawrylycz, Michael.

Nat Methods; 14(4): 332-333, 2017 03 31.

Artículo en Inglés | MEDLINE | ID: mdl-28362437

16.

Biological imaging software tools.

Eliceiri, Kevin W; Berthold, Michael R; Goldberg, Ilya G; Ibáñez, Luis; Manjunath, B S; Martone, Maryann E; Murphy, Robert F; Peng, Hanchuan; Plant, Anne L; Roysam, Badrinath; Stuurman, Nico; Stuurmann, Nico; Swedlow, Jason R; Tomancak, Pavel; Carpenter, Anne E.

Nat Methods; 9(7): 697-710, 2012 Jun 28.

Artículo en Inglés | MEDLINE | ID: mdl-22743775

17.

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images.

Bria, Alessandro; Iannello, Giulio; Onofri, Leonardo; Peng, Hanchuan.

Nat Methods; 13(3): 192-4, 2016 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-26914202

18.

mGRASP enables mapping mammalian synaptic connectivity with light microscopy.

Kim, Jinhyun; Zhao, Ting; Petralia, Ronald S; Yu, Yang; Peng, Hanchuan; Myers, Eugene; Magee, Jeffrey C.

Nat Methods; 9(1): 96-102, 2011 Dec 04.

Artículo en Inglés | MEDLINE | ID: mdl-22138823

19.

BrainAligner: 3D registration atlases of Drosophila brains.

Peng, Hanchuan; Chung, Phuong; Long, Fuhui; Qu, Lei; Jenett, Arnim; Seeds, Andrew M; Myers, Eugene W; Simpson, Julie H.

Nat Methods; 8(6): 493-500, 2011 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-21532582

20.

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.

Xiao, Hang; Peng, Hanchuan.

Bioinformatics; 29(11): 1448-54, 2013 Jun 01.

Artículo en Inglés | MEDLINE | ID: mdl-23603332

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