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1.
Nature ; 517(7533): 165-169, 2015 Jan 08.
Artículo en Inglés | MEDLINE | ID: mdl-25567280

RESUMEN

Yeasts, which have been a component of the human diet for at least 7,000 years, possess an elaborate cell wall α-mannan. The influence of yeast mannan on the ecology of the human microbiota is unknown. Here we show that yeast α-mannan is a viable food source for the Gram-negative bacterium Bacteroides thetaiotaomicron, a dominant member of the microbiota. Detailed biochemical analysis and targeted gene disruption studies support a model whereby limited cleavage of α-mannan on the surface generates large oligosaccharides that are subsequently depolymerized to mannose by the action of periplasmic enzymes. Co-culturing studies showed that metabolism of yeast mannan by B. thetaiotaomicron presents a 'selfish' model for the catabolism of this difficult to breakdown polysaccharide. Genomic comparison with B. thetaiotaomicron in conjunction with cell culture studies show that a cohort of highly successful members of the microbiota has evolved to consume sterically-restricted yeast glycans, an adaptation that may reflect the incorporation of eukaryotic microorganisms into the human diet.


Asunto(s)
Bacteroidetes/metabolismo , Tracto Gastrointestinal/microbiología , Mananos/metabolismo , Modelos Biológicos , Levaduras/química , Animales , Bacteroidetes/citología , Bacteroidetes/enzimología , Bacteroidetes/genética , Evolución Biológica , Conformación de Carbohidratos , Dieta , Enzimas/genética , Enzimas/metabolismo , Femenino , Sitios Genéticos/genética , Vida Libre de Gérmenes , Glicoproteínas/química , Glicoproteínas/metabolismo , Humanos , Masculino , Mananos/química , Manosa/metabolismo , Ratones , Modelos Moleculares , Oligosacáridos/química , Oligosacáridos/metabolismo , Periplasma/enzimología
2.
J Biol Chem ; 294(9): 3169-3180, 2019 03 01.
Artículo en Inglés | MEDLINE | ID: mdl-30602567

RESUMEN

ß-Glucosidases enhance enzymatic biomass conversion by relieving cellobiose inhibition of endoglucanases and cellobiohydrolases. However, the susceptibility of these enzymes to inhibition and transglycosylation at high glucose or cellobiose concentrations severely limits their activity and, consequently, the overall efficiency of enzyme mixtures. We determined the impact of these two processes on the hydrolytic activity of the industrially relevant family 3 ß-glucosidases from Hypocrea jecorina, HjCel3A and HjCel3B, and investigated the underlying molecular mechanisms through kinetic studies, binding free energy calculations, and molecular dynamics (MD) simulations. HjCel3B had a 7-fold higher specificity for cellobiose than HjCel3A but greater tendency for glucose inhibition. Energy decomposition analysis indicated that cellobiose has relatively weak electrostatic interactions with binding site residues, allowing it to be easily displaced by glucose and free to inhibit other hydrolytic enzymes. HjCel3A is, thus, preferable as an industrial ß-glucosidase despite its lower activity caused by transglycosylation. This competing pathway to hydrolysis arises from binding of glucose or cellobiose at the product site after formation of the glycosyl-enzyme intermediate. MD simulations revealed that binding is facilitated by hydrophobic interactions with Trp-37, Phe-260, and Tyr-443. Targeting these aromatic residues for mutation to reduce substrate affinity at the product site would therefore potentially mitigate transglycosidic activity. Engineering improved variants of HjCel3A and other structurally similar ß-glucosidases would have a significant economic effect on enzymatic biomass conversion in terms of yield and production cost as the process can be consequently conducted at higher substrate loadings.


Asunto(s)
Inhibidores Enzimáticos/farmacología , Hypocrea/enzimología , Simulación de Dinámica Molecular , beta-Glucosidasa/antagonistas & inhibidores , beta-Glucosidasa/metabolismo , Celobiosa/metabolismo , Glucósidos/química , Glucósidos/metabolismo , Glicósidos/química , Glicósidos/metabolismo , Glicosilación , Cinética , Conformación Proteica , Termodinámica , beta-Glucosidasa/química
3.
Proc Natl Acad Sci U S A ; 111(2): 845-50, 2014 Jan 14.
Artículo en Inglés | MEDLINE | ID: mdl-24379366

RESUMEN

Lignin is one of the main factors determining recalcitrance to enzymatic processing of lignocellulosic biomass. Poplars (Populus tremula x Populus alba) down-regulated for cinnamoyl-CoA reductase (CCR), the enzyme catalyzing the first step in the monolignol-specific branch of the lignin biosynthetic pathway, were grown in field trials in Belgium and France under short-rotation coppice culture. Wood samples were classified according to the intensity of the red xylem coloration typically associated with CCR down-regulation. Saccharification assays under different pretreatment conditions (none, two alkaline, and one acid pretreatment) and simultaneous saccharification and fermentation assays showed that wood from the most affected transgenic trees had up to 161% increased ethanol yield. Fermentations of combined material from the complete set of 20-mo-old CCR-down-regulated trees, including bark and less efficiently down-regulated trees, still yielded ∼ 20% more ethanol on a weight basis. However, strong down-regulation of CCR also affected biomass yield. We conclude that CCR down-regulation may become a successful strategy to improve biomass processing if the variability in down-regulation and the yield penalty can be overcome.


Asunto(s)
Aldehído Oxidorreductasas/deficiencia , Biocombustibles , Etanol/metabolismo , Lignina/metabolismo , Populus/metabolismo , Bélgica , Biomasa , Fermentación , Francia , Plantas Modificadas Genéticamente , Populus/genética
5.
J Biol Chem ; 289(45): 31624-37, 2014 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-25164811

RESUMEN

Cellulase mixtures from Hypocrea jecorina are commonly used for the saccharification of cellulose in biotechnical applications. The most abundant ß-glucosidase in the mesophilic fungus Hypocrea jecorina is HjCel3A, which hydrolyzes the ß-linkage between two adjacent molecules in dimers and short oligomers of glucose. It has been shown that enhanced levels of HjCel3A in H. jecorina cellulase mixtures benefit the conversion of cellulose to glucose. Biochemical characterization of HjCel3A shows that the enzyme efficiently hydrolyzes (1,4)- as well as (1,2)-, (1,3)-, and (1,6)-ß-D-linked disaccharides. For crystallization studies, HjCel3A was produced in both H. jecorina (HjCel3A) and Pichia pastoris (Pp-HjCel3A). Whereas the thermostabilities of HjCel3A and Pp-HjCel3A are the same, Pp-HjCel3A has a higher degree of N-linked glycosylation. Here, we present x-ray structures of HjCel3A with and without glucose bound in the active site. The structures have a three-domain architecture as observed previously for other glycoside hydrolase family 3 ß-glucosidases. Both production hosts resulted in HjCel3A structures that have N-linked glycosylations at Asn(208) and Asn(310). In H. jecorina-produced HjCel3A, a single N-acetylglucosamine is present at both sites, whereas in Pp-HjCel3A, the P. pastoris-produced HjCel3A enzyme, the glycan chains consist of 8 or 4 saccharides. The glycosylations are involved in intermolecular contacts in the structures derived from either host. Due to the different sizes of the glycosylations, the interactions result in different crystal forms for the two protein forms.


Asunto(s)
Proteínas Fúngicas/química , Glucosidasas/química , Hypocrea/enzimología , beta-Glucosidasa/química , Biomasa , Dominio Catalítico , Celulasa/química , Cristalografía por Rayos X , Glucosa/química , Glucósidos/química , Glicosilación , Enlace de Hidrógeno , Hidrólisis , Ligandos , Espectrometría de Masas , Nitrobencenos/química , Oligosacáridos/química , Pichia/metabolismo , Especificidad por Sustrato , Temperatura , Xilosa/análogos & derivados , Xilosa/química
6.
Plant Physiol ; 155(1): 399-413, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21057113

RESUMEN

Xyloglucan endo-transglycosylases (XETs) encoded by xyloglucan endo-transglycosylases/hydrolase (XTH) genes modify the xyloglucan-cellulose framework of plant cell walls, thereby regulating their expansion and strength. To evaluate the importance of XET in wood development, we studied xyloglucan dynamics and XTH gene expression in developing wood and modified XET activity in hybrid aspen (Populus tremula × tremuloides) by overexpressing PtxtXET16-34. We show that developmental modifications during xylem differentiation include changes from loosely to tightly bound forms of xyloglucan and increases in the abundance of fucosylated xyloglucan epitope recognized by the CCRC-M1 antibody. We found that at least 16 Populus XTH genes, all likely encoding XETs, are expressed in developing wood. Five genes were highly and ubiquitously expressed, whereas PtxtXET16-34 was expressed more weakly but specifically in developing wood. Transgenic up-regulation of XET activity induced changes in cell wall xyloglucan, but its effects were dependent on developmental stage. For instance, XET overexpression increased abundance of the CCRC-M1 epitope in cambial cells and xylem cells in early stages of differentiation but not in mature xylem. Correspondingly, an increase in tightly bound xyloglucan content was observed in primary-walled xylem but a decrease was seen in secondary-walled xylem. Thus, in young xylem cells, XET activity limits xyloglucan incorporation into the tightly bound wall network but removes it from cell walls in older cells. XET overexpression promoted vessel element growth but not fiber expansion. We suggest that the amount of nascent xyloglucan relative to XET is an important determinant of whether XET strengthens or loosens the cell wall.


Asunto(s)
Glucanos/metabolismo , Glicosiltransferasas/metabolismo , Hibridación Genética , Populus/enzimología , Populus/crecimiento & desarrollo , Madera/enzimología , Madera/crecimiento & desarrollo , Xilanos/metabolismo , Anticuerpos Monoclonales/metabolismo , Proliferación Celular , Perfilación de la Expresión Génica , Regulación Enzimológica de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Glicosiltransferasas/genética , Datos de Secuencia Molecular , Peso Molecular , Familia de Multigenes/genética , Filogenia , Plantas Modificadas Genéticamente , Polisacáridos/metabolismo , Populus/citología , Populus/genética , Coloración y Etiquetado , Madera/citología , Madera/genética , Xilema/citología , Xilema/enzimología
7.
Biochemistry ; 47(18): 5235-41, 2008 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-18402467

RESUMEN

1H NMR spectroscopy has been used to analyze the product profiles arising from the hydrolysis of cellooligosaccharides by family GH9 cellulases. The product profiles obtained with the wild type and several active site mutants of a bacterial processive endoglucanase, TfCel9A, were compared with those obtained by a randomly acting plant endoglucanase, PttCel9A. PttCel9A is an orthologue of the Arabidopsis endocellulase, Korrigan, which is required for efficient cellulose biosynthesis. As expected, poplar PttCel9A was shown to catalyze the degradation of cellooligosaccharides by inversion of the configuration of the anomeric carbon. The product analyses showed that the number of interactions between the glucose units of the substrate and the aromatic residues in the enzyme active sites determines the point of cleavage in both enzymes.


Asunto(s)
Actinomycetales/enzimología , Celulasa/química , Celulasa/metabolismo , Oligosacáridos/química , Oligosacáridos/metabolismo , Populus/enzimología , Actinomycetales/genética , Celulasa/genética , Hidrólisis , Cinética , Espectroscopía de Resonancia Magnética , Modelos Biológicos , Estructura Molecular , Mutación/genética
8.
FEBS J ; 274(2): 356-63, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17229143

RESUMEN

The substrate specificity of the xyloglucanase Cel74A from Hypocrea jecorina (Trichoderma reesei) was examined using several polysaccharides and oligosaccharides. Our results revealed that xyloglucan chains are hydrolyzed at substituted Glc residues, in contrast to the action of all known xyloglucan endoglucanases (EC 3.2.1.151). The building block of xyloglucan, XXXG (where X is a substituted Glc residue, and G is an unsubstituted Glc residue), was rapidly degraded to XX and XG (k(cat) = 7.2 s(-1) and Km = 120 microM at 37 degrees C and pH 5), which has only been observed before with the oligoxyloglucan-reducing-end-specific cellobiohydrolase from Geotrichum (EC 3.2.1.150). However, the cellobiohydrolase can only release XG from XXXGXXXG, whereas Cel74A hydrolyzed this substrate at both chain ends, resulting in XGXX. Differences in the length of a specific loop at subsite + 2 are discussed as being the basis for the divergent specificity of these xyloglucanases.


Asunto(s)
Glicósido Hidrolasas/química , Hypocrea/metabolismo , Secuencia de Aminoácidos , Sitios de Unión , Dicroismo Circular , Cristalografía por Rayos X , Glicósido Hidrolasas/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Terciaria de Proteína , Espectrometría de Masa por Ionización de Electrospray , Especificidad por Sustrato , Temperatura , beta-Glucanos/química
9.
Biochem J ; 395(1): 99-106, 2006 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-16356166

RESUMEN

Plant XETs [XG (xyloglucan) endotransglycosylases] catalyse the transglycosylation from a XG donor to a XG or low-molecular-mass XG fragment as the acceptor, and are thought to be important enzymes in the formation and remodelling of the cellulose-XG three-dimensional network in the primary plant cell wall. Current methods to assay XET activity use the XG polysaccharide as the donor substrate, and present limitations for kinetic and mechanistic studies of XET action due to the polymeric and polydisperse nature of the substrate. A novel activity assay based on HPCE (high performance capillary electrophoresis), in conjunction with a defined low-molecular-mass XGO {XG oligosaccharide; (XXXGXXXG, where G=Glcbeta1,4- and X=[Xylalpha1,6]Glcbeta1,4-)} as the glycosyl donor and a heptasaccharide derivatized with ANTS [8-aminonaphthalene-1,3,6-trisulphonic acid; (XXXG-ANTS)] as the acceptor substrate was developed and validated. The recombinant enzyme PttXET16A from Populus tremula x tremuloides (hybrid aspen) was characterized using the donor/acceptor pair indicated above, for which preparative scale syntheses have been optimized. The low-molecular-mass donor underwent a single transglycosylation reaction to the acceptor substrate under initial-rate conditions, with a pH optimum at 5.0 and maximal activity between 30 and 40 degrees C. Kinetic data are best explained by a ping-pong bi-bi mechanism with substrate inhibition by both donor and acceptor. This is the first assay for XETs using a donor substrate other than polymeric XG, enabling quantitative kinetic analysis of different XGO donors for specificity, and subsite mapping studies of XET enzymes.


Asunto(s)
Glucanos/química , Glucanos/metabolismo , Glicosiltransferasas/metabolismo , Populus/enzimología , Xilanos/química , Xilanos/metabolismo , Catálisis , Electroforesis Capilar , Glicosilación , Concentración de Iones de Hidrógeno , Cinética , Peso Molecular , Naftalenos/síntesis química , Especificidad por Sustrato , Temperatura
10.
Biochem J ; 390(Pt 1): 105-13, 2005 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-15804235

RESUMEN

The cDNA encoding a xyloglucan endotransglycosylase, PttXET16A, from hybrid aspen (Populus tremulaxtremuloides) has been isolated from an expressed sequence tag library and expressed in the methylotrophic yeast Pichia pastoris. Sequence analysis indicated a high degree of similarity with other proteins in the XTH (xyloglucan transglycosylase/hydrolase) gene subfamily of GH16 (glycoside hydrolase family 16). In addition to the conserved GH16 catalytic sequence motif, PttXET16A contains a conserved N-glycosylation site situated proximal to the predicted catalytic residues. MS analysis indicated that the recombinant PttXET16A expressed in P. pastoris is heterogeneous due to the presence of variable N-glycosylation and incomplete cleavage of the alpha-factor secretion signal peptide. Removal of the N-glycan by endoglycosidase H treatment did not influence the catalytic activity significantly. Similarly, site-directed mutagenesis of Asn93 to serine to remove the N-glycosylation site resulted in an enzyme which was comparable with the wild-type enzyme in specific activity and thermal stability but had clearly reduced solubility. Hydrolytic activity was detected neither in wild-type PttXET16A before or after enzymatic deglycosylation nor in PttXET16A N93S (Asn93-->Ser) mutant.


Asunto(s)
Glicosiltransferasas/química , Glicosiltransferasas/metabolismo , Pichia/metabolismo , Populus/enzimología , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Sitios de Unión , Estabilidad de Enzimas , Expresión Génica/fisiología , Glicosiltransferasas/genética , Concentración de Iones de Hidrógeno , Datos de Secuencia Molecular , Mutación , Conformación Proteica , Desnaturalización Proteica , Isoformas de Proteínas , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Temperatura
11.
J Mol Biol ; 333(4): 817-29, 2003 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-14568538

RESUMEN

The exo-loop of Trichoderma reesei cellobiohydrolase Cel7A forms the roof of the active site tunnel at the catalytic centre. Mutants were designed to study the role of this loop in crystalline cellulose degradation. A hydrogen bond to substrate made by a tyrosine at the tip of the loop was removed by the Y247F mutation. The mobility of the loop was reduced by introducing a new disulphide bridge in the mutant D241C/D249C. The tip of the loop was deleted in mutant Delta(G245-Y252). No major structural disturbances were observed in the mutant enzymes, nor was the thermostability of the enzyme affected by the mutations. The Y247F mutation caused a slight k(cat) reduction on 4-nitrophenyl lactoside, but only a small effect on cellulose hydrolysis. Deletion of the tip of the loop increased both k(cat) and K(M) and gave reduced product inhibition. Increased activity was observed on amorphous cellulose, while only half the original activity remained on crystalline cellulose. Stabilisation of the exo-loop by the disulphide bridge enhanced the activity on both amorphous and crystalline cellulose. The ratio Glc(2)/(Glc(3)+Glc(1)) released from cellulose, which is indicative of processive action, was highest with Tr Cel7A wild-type enzyme and smallest with the deletion mutant on both substrates. Based on these data it seems that the exo-loop of Tr Cel7A has evolved to facilitate processive crystalline cellulose degradation, which does not require significant conformational changes of this loop.


Asunto(s)
Celulosa 1,4-beta-Celobiosidasa/química , Phanerochaete/enzimología , Ingeniería de Proteínas , Estructura Secundaria de Proteína , Trichoderma/enzimología , Secuencia de Aminoácidos , Sitios de Unión , Celulosa 1,4-beta-Celobiosidasa/genética , Celulosa 1,4-beta-Celobiosidasa/metabolismo , Cristalografía por Rayos X , Estabilidad de Enzimas , Modelos Moleculares , Datos de Secuencia Molecular , Mutación , Desnaturalización Proteica , Estructura Terciaria de Proteína , Alineación de Secuencia
12.
Biotechnol J ; 10(1): 210-21, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25367775

RESUMEN

Synergistic action of exo- and endohydrolazes is preferred for effective destruction of biopolymers. The main purpose of the present work was to develop an efficient tool for degradation of xylan. Macroporous lab-made monolithic columns and commercial CIM-Epoxy disk were used to immobilize the recombinant ß-xylosidase from Aspergillus awamori and Grindamyl ß-xylanase. The efficiency of xylan degradation using the low-loaded ß-xylosidase column appeared to be four times higher than for the in-solution process and about six times higher than for the high-loaded bioreactor. Disk bioreactor with the Grindamil ß-xylanase operated in a recirculation mode has shown noticeable advantages over the column design. Additionally, a system comprised of two immobilized enzyme reactors (IMERs) was tested to accelerate the biopolymer hydrolysis, yielding total xylan conversion into xylose within 20 min. Fast online monitoring HPLC procedure was developed where an analytical DEAE CIM disk was added to the two-enzyme system in a conjoint mode. A loss of activity of immobilized enzymes did not exceed 7% after 5 months of the bioreactor usage. We can therefore conclude that the bioreactors developed exhibit high efficiency and remarkable long-term stability.


Asunto(s)
Aspergillus/enzimología , Reactores Biológicos , Enzimas Inmovilizadas/metabolismo , Proteínas Fúngicas/metabolismo , Xilosidasas/metabolismo , Aspergillus/genética , Endo-1,4-beta Xilanasas/química , Endo-1,4-beta Xilanasas/genética , Endo-1,4-beta Xilanasas/metabolismo , Enzimas Inmovilizadas/química , Enzimas Inmovilizadas/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Pichia/genética , Pichia/metabolismo , Porosidad , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Xilanos/química , Xilanos/metabolismo , Xilosidasas/química , Xilosidasas/genética
13.
FEBS J ; 280(1): 184-98, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23137336

RESUMEN

Methylumbelliferyl-ß-cellobioside (MUF-G2) is a convenient fluorogenic substrate for certain ß-glycoside hydrolases (GH). However, hydrolysis of the aglycone is poor with GH family 6 enzymes (GH6), despite strong binding. Prediction of the orientation of the aglycone of MUF-G2 in the +1 subsite of Hypocrea jecorina Cel6A by automated docking suggested umbelliferyl modifications at C4 and C6 for improved recognition. Four modified umbelliferyl-ß-cellobiosides [6-chloro-4-methyl- (ClMUF); 6-chloro-4-trifluoromethyl- (ClF3MUF); 4-phenyl- (PhUF); 6-chloro-4-phenyl- (ClPhUF)] were synthesized and tested with GH6, GH7, GH9, GH5 and GH45 cellulases. Indeed the rate of aglycone release by H. jecorina Cel6A was 10-150 times higher than with MUF-G2, although it was still three orders of magnitude lower than with H. jecorina Cel7B. The 4-phenyl substitution drastically reduced the fluorescence intensity of the free aglycone, while ClMUF-G2 could be used for determination of k(cat) and K(M) for H. jecorina Cel6A and Thermobifida fusca Cel6A. Crystal structures of H. jecorina Cel6A D221A mutant soaked with the MUF-, ClMUF- and ClPhUF-ß-cellobioside substrates show that the modifications turned the umbelliferyl group 'upside down', with the glycosidic bond better positioned for protonation than with MUF-G2.


Asunto(s)
Celobiosa/análogos & derivados , Celobiosa/química , Celulasas/química , Colorantes Fluorescentes/química , Proteínas Fúngicas/química , Actinomycetales/enzimología , Proteínas Bacterianas/química , Dominio Catalítico , Celobiosa/síntesis química , Cristalografía por Rayos X , Colorantes Fluorescentes/síntesis química , Hidrólisis , Hypocrea/enzimología , Cinética , Simulación del Acoplamiento Molecular , Unión Proteica , Estructura Secundaria de Proteína , Espectrometría de Fluorescencia
14.
PLoS One ; 8(9): e70562, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24039705

RESUMEN

In an effort to characterise the whole transcriptome of the fungus Hypocrea jecorina, cDNA clones of this fungus were identified that encode for previously unknown proteins that are likely to function in biomass degradation. One of these newly identified proteins, found to be co-regulated with the major H. jecorina cellulases, is a protein that was denoted Cellulose induced protein 1 (Cip1). This protein consists of a glycoside hydrolase family 1 carbohydrate binding module connected via a linker region to a domain with yet unknown function. After cloning and expression of Cip1 in H. jecorina, the protein was purified and biochemically characterised with the aim of determining a potential enzymatic activity for the novel protein. No hydrolytic activity against any of the tested plant cell wall components was found. The proteolytic core domain of Cip1 was then crystallised, and the three-dimensional structure of this was determined to 1.5 Å resolution utilising sulphur single-wavelength anomalous dispersion phasing (sulphor-SAD). A calcium ion binding site was identified in a sequence conserved region of Cip1 and is also seen in other proteins with the same general fold as Cip1, such as many carbohydrate binding modules. The presence of this ion was found to have a structural role. The Cip1 structure was analysed and a structural homology search was performed to identify structurally related proteins. The two published structures with highest overall structural similarity to Cip1 found were two poly-lyases: CsGL, a glucuronan lyase from H. jecorina and vAL-1, an alginate lyase from the Chlorella virus. This indicates that Cip1 may be a lyase. However, initial trials did not detect significant lyase activity for Cip1. Cip1 is the first structure to be solved of the 23 currently known Cip1 sequential homologs (with a sequence identity cut-off of 25%), including both bacterial and fungal members.


Asunto(s)
Proteínas Fúngicas/química , Hypocrea/enzimología , Liasas/química , Secuencia de Aminoácidos , Calcio/química , Dominio Catalítico , Complejos de Coordinación/química , Cristalografía por Rayos X , Glicol de Etileno , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Secundaria de Proteína , Desplegamiento Proteico
15.
Nat Biotechnol ; 30(12): 1225-31, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23159880

RESUMEN

Lysosomal storage diseases are treated with human lysosomal enzymes produced in mammalian cells. Such enzyme therapeutics contain relatively low levels of mannose-6-phosphate, which is required to target them to the lysosomes of patient cells. Here we describe a method for increasing mannose-6-phosphate modification of lysosomal enzymes produced in yeast. We identified a glycosidase from C. cellulans that 'uncaps' N-glycans modified by yeast-type mannose-Pi-6-mannose to generate mammalian-type N-glycans with a mannose-6-phosphate substitution. Determination of the crystal structure of this glycosidase provided insight into its substrate specificity. We used this uncapping enzyme together with α-mannosidase to produce in yeast a form of the Pompe disease enzyme α-glucosidase rich in mannose-6-phosphate. Compared with the currently used therapeutic version, this form of α-glucosidase was more efficiently taken up by fibroblasts from Pompe disease patients, and it more effectively reduced cardiac muscular glycogen storage in a mouse model of the disease.


Asunto(s)
Glicósido Hidrolasas/metabolismo , Lisosomas/enzimología , Manosafosfatos/metabolismo , Animales , Arthrobacter/enzimología , Arthrobacter/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Transporte Biológico Activo , Biotecnología , Dominio Catalítico/genética , Modelos Animales de Enfermedad , Enfermedad del Almacenamiento de Glucógeno Tipo II/tratamiento farmacológico , Enfermedad del Almacenamiento de Glucógeno Tipo II/enzimología , Enfermedad del Almacenamiento de Glucógeno Tipo II/genética , Glicósido Hidrolasas/química , Glicósido Hidrolasas/genética , Humanos , Enfermedades por Almacenamiento Lisosomal/tratamiento farmacológico , Enfermedades por Almacenamiento Lisosomal/enzimología , Enfermedades por Almacenamiento Lisosomal/genética , Ratones , Ratones Noqueados , Modelos Moleculares , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Pichia/enzimología , Pichia/genética , Conformación Proteica , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Yarrowia/enzimología , Yarrowia/genética , alfa-Glucosidasas/deficiencia , alfa-Glucosidasas/genética , alfa-Glucosidasas/metabolismo
16.
FEMS Microbiol Lett ; 303(1): 9-17, 2010 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-20015338

RESUMEN

An enzyme with mannosyl glycoprotein endo-N-acetyl-beta-D-glucosaminidase (ENGase)-type activity was partially purified from the extracellular medium of the mould Hypocrea jecorina (Trichoderma reesei). Internal peptides were generated and used to identify the gene in the T. reesei genome. The active enzyme is processed both at the N- and at the C-terminus. High-mannose-type glycoproteins are good substrates, whereas complex-type glycans are not hydrolysed. The enzyme represents the first fungal member of glycoside hydrolase family 18 with ENGase-type activity. Bacterial ENGases and the fungal chitinases belonging to the same family show very low homology with Endo T. Database searches identify several highly homologous genes in fungi and the activity is also found within other Trichoderma species. This ENGase activity, not coregulated with cellulase production, could be responsible for the extensive N-deglycosylation observed for several T. reesei cellulases.


Asunto(s)
Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Hypocrea/enzimología , Hypocrea/genética , Manosil-Glicoproteína Endo-beta-N-Acetilglucosaminidasa/genética , Manosil-Glicoproteína Endo-beta-N-Acetilglucosaminidasa/metabolismo , Secuencia de Aminoácidos , Cromatografía Liquida , Análisis por Conglomerados , Proteínas Fúngicas/química , Proteínas Fúngicas/aislamiento & purificación , Manosil-Glicoproteína Endo-beta-N-Acetilglucosaminidasa/química , Manosil-Glicoproteína Endo-beta-N-Acetilglucosaminidasa/aislamiento & purificación , Datos de Secuencia Molecular , Filogenia , Procesamiento Proteico-Postraduccional , Alineación de Secuencia , Análisis de Secuencia de Proteína , Homología de Secuencia de Aminoácido , Especificidad por Sustrato
17.
Biotechnol Biofuels ; 2(1): 16, 2009 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-19695089

RESUMEN

BACKGROUND: Drying is currently the most frequently used conservation method for cereal grain, which in temperate climates consumes a major part of process energy. Airtight storage of moist feed grain using the biocontrol yeast Pichia anomala as biopreservation agent can substantially reduce the process energy for grain storage. In this study we tested the potential of moist stored grain for bioethanol production. RESULTS: The ethanol yield from moist wheat was enhanced by 14% compared with the control obtained from traditionally (dry) stored grain. This enhancement was observed independently of whether or not P. anomala was added to the storage system, indicating that P. anomala does not impair ethanol fermentation. Starch and sugar analyses showed that during pre-treatment the starch of moist grain was better degraded by amylase treatment than that of the dry grain. Additional pre-treatment with cellulose and hemicellulose-degrading enzymes did not further increase the total ethanol yield. Sugar analysis after this pre-treatment showed an increased release of sugars not fermentable by Saccharomyces cerevisiae. CONCLUSION: The ethanol yield from wheat grain is increased by airtight storage of moist grain, which in addition can save substantial amounts of energy used for drying the grain. This provides a new opportunity to increase the sustainability of bioethanol production.

18.
J Mol Biol ; 383(1): 144-54, 2008 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-18723026

RESUMEN

The glycoside hydrolase (GH) family 61 is a long-recognized, but still recondite, class of proteins, with little known about the activity, mechanism or function of its more than 70 members. The best-studied GH family 61 member, Cel61A of the filamentous fungus Hypocrea jecorina, is known to be an endoglucanase, but it is not clear if this represents the main activity or function of this family in vivo. We present here the first structure for this family, that of Cel61B from H. jecorina. The best-quality crystals were formed in the presence of nickel, and the crystal structure was solved to 1.6 A resolution using a single-wavelength anomalous dispersion method with nickel as the source of anomalous scatter. Cel61B lacks a carbohydrate-binding module and is a single-domain protein that folds into a twisted beta-sandwich. A structure-aided sequence alignment of all GH family 61 proteins identified a highly conserved group of residues on the surface of Cel61B. Within this patch of mostly polar amino acids was a site occupied by the intramolecular nickel hexacoordinately bound in the solved structure. In the Cel61B structure, there is no easily identifiable carbohydrate-binding cleft or pocket or catalytic center of the types normally seen in GHs. A structural comparison search showed that the known structure most similar to Cel61B is that of CBP21 from the Gram-negative soil bacterium Serratia marcescens, a member of the carbohydrate-binding module family 33 proteins. A polar surface patch highly conserved in that structural family has been identified in CBP21 and shown to be involved in chitin binding and in the protein's enhancement of chitinase activities. The analysis of the Cel61B structure is discussed in light of our continuing research to better understand the activities and function of GH family 61.


Asunto(s)
Glicósido Hidrolasas/química , Hypocrea/enzimología , Secuencia de Aminoácidos , Secuencia de Bases , Sitios de Unión , Cristalografía por Rayos X , Cartilla de ADN/genética , Genes Fúngicos , Glicósido Hidrolasas/clasificación , Glicósido Hidrolasas/genética , Glicósido Hidrolasas/metabolismo , Hypocrea/genética , Modelos Moleculares , Datos de Secuencia Molecular , Níquel/química , Pliegue de Proteína , Procesamiento Proteico-Postraduccional , Estructura Secundaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido , Electricidad Estática , Trichoderma/enzimología , Trichoderma/genética
19.
J Biol Chem ; 283(32): 21864-72, 2008 Aug 08.
Artículo en Inglés | MEDLINE | ID: mdl-18508770

RESUMEN

Xyloglucan endo-transglycosylases (XETs) are key enzymes involved in the restructuring of plant cell walls during morphogenesis. As members of glycoside hydrolase family 16 (GH16), XETs are predicted to employ the canonical retaining mechanism of glycosyl transfer involving a covalent glycosyl-enzyme intermediate. Here, we report the accumulation and direct observation of such intermediates of PttXET16-34 from hybrid aspen by electrospray mass spectrometry in combination with synthetic "blocked" substrates, which function as glycosyl donors but are incapable of acting as glycosyl acceptors. Thus, GalGXXXGGG and GalGXXXGXXXG react with the wild-type enzyme to yield relatively stable, kinetically competent, covalent GalG-enzyme and GalGXXXG-enzyme complexes, respectively (Gal=Galbeta(1-->4), G=Glcbeta(1-->4), and X=Xylalpha(1-->6)Glcbeta(1-->4)). Quantitation of ratios of protein and saccharide species at pseudo-equilibrium allowed us to estimate the free energy change (DeltaG(0)) for the formation of the covalent GalGXXXG-enzyme as 6.3-8.5 kJ/mol (1.5-2.0 kcal/mol). The data indicate that the free energy of the beta(1-->4) glucosidic bond in xyloglucans is preserved in the glycosyl-enzyme intermediate and harnessed for religation of the polysaccharide in vivo.


Asunto(s)
Glicosiltransferasas/metabolismo , Populus/enzimología , Termodinámica , Glicosiltransferasas/biosíntesis , Glicosiltransferasas/química , Hidrólisis , Espectrometría de Masas , Oligosacáridos/química , Oligosacáridos/metabolismo , Populus/química , Coloración y Etiquetado
20.
Org Biomol Chem ; 5(24): 3971-8, 2007 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-18043802

RESUMEN

Glycosynthases are active-site mutants of glycoside hydrolases that catalyse glycosyl transfer using suitable activated donor substrates without competing product hydrolysis (S. M. Hancock, M. D. Vaughan and S. G. Withers, Curr. Opin. Chem. Biol., 2006, 10, 509-519). Site-directed mutagenesis of the catalytic nucleophile, Glu-85, of a Populus tremula x tremuloides xyloglucan endo-transglycosylase (PttXET16-34, EC 2.4.1.207) into alanine, glycine, and serine yielded enzymes with glycosynthase activity. Product analysis indicated that PttXET16-34 E85A in particular was able to catalyse regio- and stereospecific homo- and hetero-condensations of alpha-xylogluco-oligosaccharyl fluoride donors XXXGalphaF and XLLGalphaF to produce xyloglucans with regular sidechain substitution patterns. This substrate promiscuity contrasts that of the Humicola insolens Cel7B E197A glycosynthase, which was not able to polymerise the di-galactosylated substrate XLLGalphaF. The production of the PttXET16-34 E85A xyloglucosynthase thus expands the repertoire of glycosynthases to include those capable of synthesising structurally homogenenous xyloglucans for applications.


Asunto(s)
Glicósido Hidrolasas/metabolismo , Glicosiltransferasas/genética , Glicosiltransferasas/metabolismo , Oligosacáridos/metabolismo , Populus/enzimología , Sitios de Unión , Catálisis , Flúor/química , Hidrólisis , Cinética , Mutagénesis Sitio-Dirigida , Espectrometría de Masa por Ionización de Electrospray , Estereoisomerismo , Especificidad por Sustrato
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