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1.
Bull Entomol Res ; : 1-12, 2024 May 16.
Artículo en Inglés | MEDLINE | ID: mdl-38751346

RESUMEN

The Argentine ant (Linepithema humile) and the little fire ant (Wasmannia auropunctata) are among the top 100 invasive alien species globally, causing significant ecological and economic harm. Therefore, it is crucial to study their potential geographic distribution worldwide. This study aimed to predict their global distribution under current and future climate conditions. We used distribution data from various sources, including CABI, GBIF, and PIAKey, and key climate variables selected from 19 environmental factors to model their potential geographic distribution using MaxEnt. The AUC values were 0.925 and 0.937 for L. humile and W. auropunctata, respectively, indicating good predictive performance. Suitable areas for L. humile were mainly in southern North America, northern South America, Europe, central Asia, southern Oceania, and parts of Africa, while W. auropunctata suitable areas were mostly in southern North America, most of South America, a small part of Europe, southern Asia, central Africa, and some parts of Oceania. Under climate change scenario, suitable areas for L. humile increased, while highly suitable areas for W. auropunctata decreased. The top four countries with the largest areas of overlapping suitable habitat under current climate were Brazil, China, Australia, and Argentina, while under future SSP585 climate scenario, the top four countries were Brazil, China, Indonesia, and Argentina. Some countries, such as Estonia and Finland, will see an overlapping adaptation area under climate change. In conclusion, this study provides insight into controlling the spread and harm of L. humile and W. auropunctata.

2.
Sensors (Basel) ; 23(20)2023 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-37896624

RESUMEN

Selecting training samples is crucial in remote sensing image classification. In this paper, we selected three images-Sentinel-2, GF-1, and Landsat 8-and employed three methods for selecting training samples: grouping selection, entropy-based selection, and direct selection. We then used the selected training samples to train three supervised classification models-random forest (RF), support-vector machine (SVM), and k-nearest neighbor (KNN)-and evaluated the classification results of the three images. According to the experimental results, the three classification models performed similarly. Compared with the entropy-based method, the grouping selection method achieved higher classification accuracy using fewer samples. In addition, the grouping selection method outperformed the direct selection method with the same number of samples. Therefore, the grouping selection method performed the best. When using the grouping selection method, the image classification accuracy increased with the increase in the number of samples within a certain sample size range.

3.
Int J Mol Sci ; 23(24)2022 Dec 10.
Artículo en Inglés | MEDLINE | ID: mdl-36555339

RESUMEN

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly contagious and pathogenic coronavirus that emerged in late 2019 and caused a pandemic of respiratory illness termed as coronavirus disease 2019 (COVID-19). Cancer patients are more susceptible to SARS-CoV-2 infection. The treatment of cancer patients infected with SARS-CoV-2 is more complicated, and the patients are at risk of poor prognosis compared to other populations. Patients infected with SARS-CoV-2 are prone to rapid development of acute respiratory distress syndrome (ARDS) of which pulmonary fibrosis (PF) is considered a sequelae. Both ARDS and PF are factors that contribute to poor prognosis in COVID-19 patients. However, the molecular mechanisms among COVID-19, ARDS and PF in COVID-19 patients with cancer are not well-understood. In this study, the common differentially expressed genes (DEGs) between COVID-19 patients with and without cancer were identified. Based on the common DEGs, a series of analyses were performed, including Gene Ontology (GO) and pathway analysis, protein-protein interaction (PPI) network construction and hub gene extraction, transcription factor (TF)-DEG regulatory network construction, TF-DEG-miRNA coregulatory network construction and drug molecule identification. The candidate drug molecules (e.g., Tamibarotene CTD 00002527) obtained by this study might be helpful for effective therapeutic targets in COVID-19 patients with cancer. In addition, the common DEGs among ARDS, PF and COVID-19 patients with and without cancer are TNFSF10 and IFITM2. These two genes may serve as potential therapeutic targets in the treatment of COVID-19 patients with cancer. Changes in the expression levels of TNFSF10 and IFITM2 in CD14+/CD16+ monocytes may affect the immune response of COVID-19 patients. Specifically, changes in the expression level of TNFSF10 in monocytes can be considered as an immune signature in COVID-19 patients with hematologic cancer. Targeting N6-methyladenosine (m6A) pathways (e.g., METTL3/SERPINA1 axis) to restrict SARS-CoV-2 reproduction has therapeutic potential for COVID-19 patients.


Asunto(s)
COVID-19 , Neoplasias , Fibrosis Pulmonar , Síndrome de Dificultad Respiratoria , Humanos , COVID-19/complicaciones , COVID-19/genética , Pulmón/patología , Proteínas de la Membrana/metabolismo , Metiltransferasas/metabolismo , Neoplasias/complicaciones , Neoplasias/genética , Fibrosis Pulmonar/patología , Fibrosis Pulmonar/virología , Síndrome de Dificultad Respiratoria/patología , Síndrome de Dificultad Respiratoria/virología , RNA-Seq , SARS-CoV-2 , Análisis de Expresión Génica de una Sola Célula , Factores de Transcripción/metabolismo
4.
BMC Pregnancy Childbirth ; 21(1): 558, 2021 Aug 16.
Artículo en Inglés | MEDLINE | ID: mdl-34399704

RESUMEN

BACKGROUND: Consumption of a diet with high adherence to a Mediterranean diet pattern (MDP) has been associated with a favorable gastrointestinal tract (GIT) microbiome. A healthy GIT microbiome in pregnancy, as defined by increased alpha diversity, is associated with lower chance of adverse perinatal outcomes. This study aimed to evaluate the impact of adherence to an MDP on GIT microbial diversity longitudinally throughout pregnancy. METHODS: Adherence to MDP was scored by the Alternate Mediterranean (aMED) Diet Quality Score, after being applied to a validated Food Frequency Questionnaire. Association of aMED Scores with GIT alpha diversity profiles were compared linearly and across time using a linear mixed model, including covariates of age, body mass index (BMI), ethnicity, and parity. RESULTS: Forty-one participants of Filipino, Japanese, Native Hawaiian, and Non-Hispanic White descent provided dietary information and microbiome samples during each trimester of pregnancy. Alpha diversity profiles changed over gestation, with decreased microbial diversity in the third trimester. aMED scores positively correlated with Chao1 Index and Observed Species Number (r = 0.244, p = 0.017, and r = 0.233, p = 0.023, respectively). The strongest association was detected in the third trimester (Chao 1: r = 0.43, p = 0.020, Observed Species Number: r = 0.41, p = 0.026). Participants with higher aMED scores had higher relative abundance of Acidaminoacaeae at the family level (p = 0.0169), as well as higher abundance of several species known to increase production of short chain fatty acids within the GIT. CONCLUSIONS: Adherence to MDP pattern is associated with increased maternal GIT microbial diversity, and promotes the abundance of bacteria that produce short chain fatty acids. Increased consumption of fruits, vegetables and legumes with low red meat consumption were key components driving this association. The effect of nutrition however, was less of an effect than pregnancy itself. Further studies are needed to determine if adherence to a Mediterranean diet translates not only into microbial health, but also into reduced risk of adverse pregnancy outcomes.


Asunto(s)
Dieta Mediterránea , Microbioma Gastrointestinal/fisiología , Adolescente , Adulto , Asiático , Femenino , Hawaii/epidemiología , Humanos , Japón/etnología , Persona de Mediana Edad , Filipinas/etnología , Embarazo , Complicaciones del Embarazo/epidemiología , Trimestres del Embarazo , Población Blanca , Adulto Joven
5.
Environ Microbiol ; 20(10): 3504-3513, 2018 10.
Artículo en Inglés | MEDLINE | ID: mdl-30051570

RESUMEN

Temperature is an important correlate of global patterns of biodiversity, yet the mechanisms driving these relationships are not well understood. Taxa-area relationships (TARs) have been intensively examined, but the effects of temperature on TARs, particularly for microbial communities, are largely undocumented. Here we present a continental-scale description of temperature-dependent nested TARs of microbial communities (bacteria and archaea) from soils of six forest sites spanning a temperature gradient from subalpine Colorado to tropical Panama. Our results revealed that spatial scaling rates (z-values) of microbial communities varied with both taxonomic resolutions and phylogenetic groups. Additionally, microbial TAR z-values increased with temperature (r = 0.739, P < 0.05), but were not correlated with other environmental variables tested (P > 0.05), indicating that microbial spatial scaling rate is temperature-dependent. Understanding how temperature affects the spatial scaling of microbial biodiversity is of fundamental importance for preservation of soil biodiversity and management of ecosystems.


Asunto(s)
Bosques , Microbiología del Suelo , Temperatura , Archaea/clasificación , Bacterias/clasificación , Biodiversidad , Microbiota , Filogenia
6.
Microb Ecol ; 75(2): 543-554, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-28932895

RESUMEN

Caries is one of the most prevalent and costly infectious diseases affecting humans of all ages. It is initiated by cariogenic supragingival dental plaques forming on saliva-coated tooth surfaces, yet the etiology remains elusive. To determine which microbial populations may predispose a patient to caries, we report here an in-depth and comprehensive view of the microbial community associated with supragingival dental plaque collected from the healthy teeth of caries patients and healthy adults. We found that microbial communities from caries patients had a higher evenness and inter-individual variations but simpler ecological networks compared to healthy controls despite the overall taxonomic structure being similar. Genera including Selenomonas, Treponema, Atopobium, and Bergeriella were distributed differently between the caries and healthy groups with disturbed co-occurrence patterns. In addition, caries and healthy subjects carried different Treponema, Atopobium, and Prevotella species. Moreover, distinct populations of 13 function genes involved in organic acid synthesis, glycan biosynthesis, complex carbohydrate degradation, amino acid synthesis and metabolism, purine and pyrimidine metabolism, isoprenoid biosynthesis, lipid metabolism, and co-factor biosynthesis were present in each of the healthy and caries groups. Our results suggested that the fundamental differences in dental plaque ecology partially explained the patients' susceptibility to caries, and could be used for caries risk prediction in the future.


Asunto(s)
Bacterias/clasificación , Bacterias/aislamiento & purificación , Caries Dental/microbiología , Placa Dental/microbiología , Encía/microbiología , Microbiota , Adulto , Bacterias/genética , Femenino , Humanos , Masculino , Persona de Mediana Edad
7.
Environ Sci Technol ; 51(7): 3609-3620, 2017 04 04.
Artículo en Inglés | MEDLINE | ID: mdl-28300407

RESUMEN

To further understand the diversity and dynamics of SRB in response to substrate amendment, we sequenced genes coding for the dissimilatory sulfite reductase (dsrA) in groundwater samples collected after an emulsified vegetable oil (EVO) amendment, which sustained U(VI)-reducing conditions for one year in a fast-flowing aquifer. EVO amendment significantly altered the composition of groundwater SRB communities. Sequences having no closely related-described species dominated (80%) the indigenous SRB communities in nonamended wells. After EVO amendment, Desulfococcus, Desulfobacterium, and Desulfovibrio, known for long-chain-fatty-acid, short-chain-fatty-acid and H2 oxidation and U(VI) reduction, became dominant accounting for 7 ± 2%, 21 ± 8%, and 55 ± 8% of the SRB communities, respectively. Succession of these SRB at different bioactivity stages based on redox substrates/products (acetate, SO4-2, U(VI), NO3-, Fe(II), and Mn(II)) was observed. Desulfovibrio and Desulfococcus dominated SRB communities at 4-31 days, whereas Desulfobacterium became dominant at 80-140 days. By the end of the experiment (day 269), the abundance of these SRB decreased but the overall diversity of groundwater SRB was still higher than non-EVO controls. Up to 62% of the SRB community changes could be explained by groundwater geochemical variables, including those redox substrates/products. A significant (P < 0.001) correlation was observed between groundwater U(VI) concentrations and Desulfovibrio abundance. Our results showed that the members of SRB and their dynamics were correlated significantly with slow EVO biodegradation, electron donor production and maintenance of U(VI)-reducing conditions in the aquifer.


Asunto(s)
Agua Subterránea/química , Uranio/metabolismo , Bacterias/metabolismo , Biodegradación Ambiental , Oxidación-Reducción , Sulfatos/química , Óxidos de Azufre
8.
Proc Natl Acad Sci U S A ; 111(41): 14822-7, 2014 Oct 14.
Artículo en Inglés | MEDLINE | ID: mdl-25267659

RESUMEN

Many species have evolved to function as specialized mutualists, often to the detriment of their ability to survive independently. However, there are few, if any, well-controlled observations of the evolutionary processes underlying the genesis of new mutualisms. Here, we show that within the first 1,000 generations of initiating independent syntrophic interactions between a sulfate reducer (Desulfovibrio vulgaris) and a hydrogenotrophic methanogen (Methanococcus maripaludis), D. vulgaris frequently lost the capacity to grow by sulfate respiration, thus losing the primary physiological attribute of the genus. The loss of sulfate respiration was a consequence of mutations in one or more of three key genes in the pathway for sulfate respiration, required for sulfate activation (sat) and sulfate reduction to sulfite (apsA or apsB). Because loss-of-function mutations arose rapidly and independently in replicated experiments, and because these mutations were correlated with enhanced growth rate and productivity, gene loss could be attributed to natural selection, even though these mutations should significantly restrict the independence of the evolved D. vulgaris. Together, these data present an empirical demonstration that specialization for a mutualistic interaction can evolve by natural selection shortly after its origin. They also demonstrate that a sulfate-reducing bacterium can readily evolve to become a specialized syntroph, a situation that may have often occurred in nature.


Asunto(s)
Desulfovibrio vulgaris/genética , Evolución Molecular Dirigida , Methanococcus/genética , Técnicas de Cocultivo , Mutación/genética , Oxidación-Reducción , Fenotipo , Sulfatos/metabolismo , Simbiosis
9.
Environ Microbiol ; 18(1): 205-18, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26177312

RESUMEN

Discerning network interactions among different species/populations in microbial communities has evoked substantial interests in recent years, but little information is available about temporal dynamics of microbial network interactions in response to environmental perturbations. Here, we modified the random matrix theory-based network approach to discern network succession in groundwater microbial communities in response to emulsified vegetable oil (EVO) amendment for uranium bioremediation. Groundwater microbial communities from one control and seven monitor wells were analysed with a functional gene array (GeoChip 3.0), and functional molecular ecological networks (fMENs) at different time points were reconstructed. Our results showed that the network interactions were dramatically altered by EVO amendment. Dynamic and resilient succession was evident: fairly simple at the initial stage (Day 0), increasingly complex at the middle period (Days 4, 17, 31), most complex at Day 80, and then decreasingly complex at a later stage (140-269 days). Unlike previous studies in other habitats, negative interactions predominated in a time-series fMEN, suggesting strong competition among different microbial species in the groundwater systems after EVO injection. Particularly, several keystone sulfate-reducing bacteria showed strong negative interactions with their network neighbours. These results provide mechanistic understanding of the decreased phylogenetic diversity during environmental perturbations.


Asunto(s)
Bacterias/metabolismo , Biodegradación Ambiental , Agua Subterránea/microbiología , Aceites de Plantas/metabolismo , Uranio/metabolismo , Bacterias/genética , Ecosistema , Microbiota/genética , Filogenia
10.
BMC Microbiol ; 15: 125, 2015 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-26084274

RESUMEN

BACKGROUND: Although high-throughput sequencing, such as Illumina-based technologies (e.g. MiSeq), has revolutionized microbial ecology, adaptation of amplicon sequencing for environmental microbial community analysis is challenging due to the problem of low base diversity. RESULTS: A new phasing amplicon sequencing approach (PAS) was developed by shifting sequencing phases among different community samples from both directions via adding various numbers of bases (0-7) as spacers to both forward and reverse primers. Our results first indicated that the PAS method substantially ameliorated the problem of unbalanced base composition. Second, the PAS method substantially improved the sequence read base quality (an average of 10 % higher of bases above Q30). Third, the PAS method effectively increased raw sequence throughput (~15 % more raw reads). In addition, the PAS method significantly increased effective reads (9-47 %) and the effective read sequence length (16-96 more bases) after quality trim at Q30 with window 5. In addition, the PAS method reduced half of the sequencing errors (0.54-1.1 % less). Finally, two-step PCR amplification of the PAS method effectively ameliorated the amplification biases introduced by the long barcoded PCR primers. CONCLUSION: The developed strategy is robust for 16S rRNA gene amplicon sequencing. In addition, a similar strategy could also be used for sequencing other genes important to ecosystem functional processes.


Asunto(s)
Archaea/clasificación , Bacterias/clasificación , ADN Ribosómico/análisis , Secuenciación de Nucleótidos de Alto Rendimiento/métodos , Análisis de Secuencia de ADN/métodos , Archaea/genética , Bacterias/genética , Cartilla de ADN , ADN de Archaea/análisis , ADN Bacteriano/análisis , Microbiología Ambiental , Humanos , Saliva/microbiología
11.
Mol Ecol ; 24(1): 222-34, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25424441

RESUMEN

Understanding the response of permafrost microbial communities to climate warming is crucial for evaluating ecosystem feedbacks to global change. This study investigated soil bacterial and archaeal communities by Illumina MiSeq sequencing of 16S rRNA gene amplicons across a permafrost thaw gradient at different depths in Alaska with thaw progression for over three decades. Over 4.6 million passing 16S rRNA gene sequences were obtained from a total of 97 samples, corresponding to 61 known classes and 470 genera. Soil depth and the associated soil physical-chemical properties had predominant impacts on the diversity and composition of the microbial communities. Both richness and evenness of the microbial communities decreased with soil depth. Acidobacteria, Verrucomicrobia, Alpha- and Gamma-Proteobacteria dominated the microbial communities in the upper horizon, whereas abundances of Bacteroidetes, Delta-Proteobacteria and Firmicutes increased towards deeper soils. Effects of thaw progression were absent in microbial communities in the near-surface organic soil, probably due to greater temperature variation. Thaw progression decreased the abundances of the majority of the associated taxa in the lower organic soil, but increased the abundances of those in the mineral soil, including groups potentially involved in recalcitrant C degradation (Actinomycetales, Chitinophaga, etc.). The changes in microbial communities may be related to altered soil C sources by thaw progression. Collectively, this study revealed different impacts of thaw in the organic and mineral horizons and suggests the importance of studying both the upper and deeper soils while evaluating microbial responses to permafrost thaw.


Asunto(s)
Archaea/clasificación , Bacterias/clasificación , Hielos Perennes/microbiología , Microbiología del Suelo , Alaska , Archaea/genética , Bacterias/genética , ADN de Archaea/genética , ADN Bacteriano/genética , ARN Ribosómico 16S/genética , Suelo/química , Tundra
12.
PLoS Genet ; 7(10): e1002318, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22022280

RESUMEN

Thermoanaerobic bacteria are of interest in cellulosic-biofuel production, due to their simultaneous pentose and hexose utilization (co-utilization) and thermophilic nature. In this study, we experimentally reconstructed the structure and dynamics of the first genome-wide carbon utilization network of thermoanaerobes. The network uncovers numerous novel pathways and identifies previously unrecognized but crucial pathway interactions and the associated key junctions. First, glucose, xylose, fructose, and cellobiose catabolism are each featured in distinct functional modules; the transport systems of hexose and pentose are apparently both regulated by transcriptional antiterminators of the BglG family, which is consistent with pentose and hexose co-utilization. Second, glucose and xylose modules cooperate in that the activity of the former promotes the activity of the latter via activating xylose transport and catabolism, while xylose delays cell lysis by sustaining coenzyme and ion metabolism. Third, the vitamin B12 pathway appears to promote ethanologenesis through ethanolamine and 1, 2-propanediol, while the arginine deiminase pathway probably contributes to cell survival in stationary phase. Moreover, by experimentally validating the distinct yet collaborative nature of glucose and xylose catabolism, we demonstrated that these novel network-derived features can be rationally exploited for product-yield enhancement via optimized timing and balanced loading of the carbon supply in a substrate-specific manner. Thus, this thermoanaerobic glycobiome reveals novel genetic features in carbon catabolism that may have immediate industrial implications and provides novel strategies and targets for fermentation and genome engineering.


Asunto(s)
Proteínas Bacterianas/genética , Hexosas/metabolismo , Pentosas/metabolismo , Proteínas de Unión al ARN/genética , Thermoanaerobacter/genética , Thermoanaerobacter/metabolismo , Proteínas Bacterianas/metabolismo , Biocombustibles , Celobiosa/metabolismo , Celulosa/metabolismo , Etanol/química , Etanol/metabolismo , Etanolamina/química , Etanolamina/metabolismo , Fermentación , Regulación Bacteriana de la Expresión Génica , Glucosa/metabolismo , Glicómica , Filogenia , Proteínas de Unión al ARN/metabolismo , Vitamina B 12/química , Vitamina B 12/metabolismo , Xilosa/metabolismo
13.
Sci Total Environ ; 927: 172167, 2024 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-38580118

RESUMEN

The improvement of food security and nutrition has attracted wide attention, and microalgae as the most promising food source are being further explored. This paper comprehensively introduces basic and functional nutrients rich in microalgae by elaborated tables incorporating a wide variety of studies and summarizes factors influencing their accumulation effects. Subsequently, multiple comparisons of nutrients were conducted, indicating that microalgae have a high protein content. Moreover, controllable production costs and environmental friendliness prompt microalgae into the list that contains more promising and reliable future food. However, microalgae and -based foods approved and sold are limited strictly, showing that safety is a key factor affecting dietary consideration. Notably, sensory profiles and ingredient clarity play an important role in improving the acceptance of microalgae-based foods. Finally, based on the bottleneck in the microalgae food industry, suggestions for its future development were discussed.


Asunto(s)
Microalgas , Inocuidad de los Alimentos , Nutrientes/análisis , Valor Nutritivo
14.
Sci Rep ; 14(1): 13278, 2024 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-38858442

RESUMEN

The sandstone is in a state of dry-wet cycle under the repeated action of rainfall, and its mechanical properties are deteriorated to varying degrees, which causes cracks in the sandstone. Therefore, it is of great significance to study the mechanical properties and fracture propagation of sandstone under the action of dry-wet cycles. Currently, there are limited studies using numerical simulation methods to study the fracture extension of rocks under various dry and wet cycling conditions.Therefore, in this paper, the effects of different amounts of dry and wet cycling on the mechanical properties and fracture behavior of sandstone are investigated through uniaxial compression tests and numerical simulations of fracture extension. The findings indicate that the deformation stage of sandstone remains unchanged by the dry-wet cycle. The uniaxial compressive potency and coefficient of restitution gradually diminish as the quantity of cycles rises, while the Poisson's ratio exhibits the opposite trend, and the impact on the mechanical performance of sandstone wanes with cycle increments, and the correlation coefficient surpasses 0.93, signifying a substantial influence of the dry-wet cycle on sandstone's mechanical performances. The discrepancy between the numerical simulation and experimental results is minimal, with a maximum error of only 3.1%, demonstrating the congruence of the simulation and experimental outcomes.The mesoscopic examination of the simulations indicates that the quantity of fractures in the sandstone specimens rises with the escalation of dry-wet cycles, and the steps of analysis linked to crack inception and fracture propagation are accelerated, and the analysis steps from fracture initiation to penetration are also reduced.

15.
Environ Sci Technol ; 47(17): 9841-9, 2013 Sep 03.
Artículo en Inglés | MEDLINE | ID: mdl-23889170

RESUMEN

Microbial community responses to environmental stresses are critical for microbial growth, survival, and adaptation. To fill major gaps in our ability to discern the influence of environmental changes on microbial communities from engineered and natural environments, a functional gene-based microarray, termed StressChip, has been developed. First, 46 functional genes involved in microbial responses to environmental stresses such as changes to temperature, osmolarity, oxidative status, nutrient limitation, or general stress response were selected and curated. A total of 22,855 probes were designed, covering 79,628 coding sequences from 985 bacterial, 76 archaeal, and 59 eukaryotic species/strains. Probe specificity was computationally verified. Second, the usefulness of functional genes as indicators of stress response was examined by surveying their distribution in metagenome data sets. The abundance of individual stress response genes is consistent with expected distributions based on respective habitats. Third, the StressChip was used to analyze marine microbial communities from the Deepwater Horizon oil spill. That functional stress response genes were detected in higher abundance (p < 0.05) in oil plume compared to nonplume samples indicated shifts in community composition and structure, consistent with previous results. In summary, StressChip provides a new tool for accessing microbial community functional structure and responses to environmental changes.


Asunto(s)
Archaea/genética , Bacterias/genética , Monitoreo del Ambiente/métodos , Eucariontes/genética , Metagenoma , Análisis por Micromatrices/métodos , Microbiota , Archaea/metabolismo , Bacterias/metabolismo , Biología Computacional/métodos , Eucariontes/metabolismo , Genes Arqueales/efectos de los fármacos , Genes Bacterianos/efectos de los fármacos , Golfo de México , Metagenoma/efectos de los fármacos , Microbiota/efectos de los fármacos , Sondas de Ácido Nucleico/metabolismo , Agua de Mar/microbiología , Estrés Fisiológico
16.
Pest Manag Sci ; 79(4): 1342-1351, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36412239

RESUMEN

BACKGROUND: The red imported fire ant, Solenopsis invicta Buren is one of the world's most successful and destructive invasive ant species. In mainland China, fast, monthly and annual pest reports on all pests have been established since 2010. The distribution of S. invicta resulting from climate change in China was predicted using MaxEnt modeling in combination with comprehensive surveillance data and 56 environmental factors. RESULTS: The fast and monthly reports revealed that S. invicta had spread to new territories almost every year in this timeframe. The transportation of seedlings and deployment of turfgrass were the major artificial transmission pathways. Annual reports indicated that control efforts had effectively reduced its occurrence areas and degree of severity of infestations, and retrieved the economic loss caused by S. invicta. The MaxEnt model predicted that S. invicta would expand to 23 provinces in China as a result of climate change. Moisture variables were the key factors affecting the distribution of this pest. CONCLUSION: Based on the theoretical reference framework of this research, China proposed the first-ever integrated tactics against a single pest, jointly involving nine ministries, which include clarifying responsibilities, cutting off transmission pathways, strengthening surveillance, declaring pest distributions and conducting preventive and control campaigns. Practical efforts and measures combating the devastation of S. invicta may shed light on its management and other invasive species worldwide. © 2022 Society of Chemical Industry.


Asunto(s)
Hormigas , Animales , China , Especies Introducidas
17.
Chem Commun (Camb) ; 59(26): 3890-3893, 2023 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-36916831

RESUMEN

Identifying the phenotype of aggressive breast cancer (BC) cells is vital for the effectiveness of surgical intervention and standard-of-care therapy. HER-2 is overexpressed in aggressive BC and MMP-2 is a crucial indicator of invasiveness and metastasis of BC, so we have proposed an electrochemical biosensor in this work to identify the phenotype of aggressive BC cells via detection of HER-2 together with MMP-2 by designing a dual-trapping peptide and a metal organic framework (MOF)-based probe. Specifically, the designed peptide contains both a HER-2 recognition sequence and MMP-2-specific substrate, while the MOF-based probe (AuNPs@HRP@ZIF-8), prepared by loading horseradish peroxidase (HRP) and gold nanoparticles (AuNPs) on ZIF-8, can also combine with the peptide. Consequently, sensitive and specific detection of both HER-2 and MMP-2 can be achieved in the wide range from 50 fg mL-1 to 50 ng mL-1 and 10 fg mL-1 to 10 ng mL-1, respectively, and the biosensor can distinguish HER-2+ BC cells and evaluate the invasion capability, which might be extended to provide a method for the accurate identification of tumor features in BC subtypes.


Asunto(s)
Técnicas Biosensibles , Nanopartículas del Metal , Estructuras Metalorgánicas , Neoplasias , Oro , Metaloproteinasa 2 de la Matriz , Peroxidasa de Rábano Silvestre , Fenotipo , Técnicas Biosensibles/métodos , Técnicas Electroquímicas/métodos , Límite de Detección
18.
ACS Appl Mater Interfaces ; 15(5): 6411-6419, 2023 Feb 08.
Artículo en Inglés | MEDLINE | ID: mdl-36693188

RESUMEN

Serum alpha fetoprotein (AFP) is a "gold-standard" biomarker for the diagnosis of hepatocellular carcinoma (HCC). Available pieces of evidence suggest that the ratio of AFP-L3 isoform in the total AFP may provide more accurate prediction for the incidence of HCC. In this work, we design an electrochemical aptasensor for high-accuracy assay of AFP-L3 ratio based on differentiated labeling of AFP isoforms in an orderly fashion. Specifically, total AFP is first captured by an AFP aptamer-functionalized electrode and labeled with quantum dots-functionalized DNA probes via mild reduction. Then, AFP-L3 isoform that strongly binds to Lens culinaris agglutinin is labeled with silver nanoparticles after the exonuclease-catalyzed removal of DNA probes. By tracing the electrochemical responses of quantum dots and silver nanoparticles, respectively, the amounts of total AFP and AFP-L3 isoforms are determined and the AFP-L3 ratio is accordingly calculated to favor the accurate HCC diagnosis. Experimental results prove the high-accuracy assay of AFP-L3 ratio based on the AFP quantitation in a linear range of 0.0008-40 ng mL-1 and AFP-L3 quantitation in a linear range of 0.004-40 ng mL-1. The aptasensor also displays satisfactory specificity and good recoveries even in the complex serum samples. Therefore, the aptasensor may provide a valuable tool for the assay of the AFP-L3 ratio and have a great potential use in early warning of HCC for clinical application.


Asunto(s)
Carcinoma Hepatocelular , Neoplasias Hepáticas , Nanopartículas del Metal , Humanos , Carcinoma Hepatocelular/diagnóstico , Carcinoma Hepatocelular/patología , alfa-Fetoproteínas/metabolismo , Neoplasias Hepáticas/patología , Biomarcadores de Tumor , Plata , Isoformas de Proteínas
19.
Front Plant Sci ; 14: 1238656, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37841613

RESUMEN

Introduction: Erigeron philadelphicus and Erigeron annuus are two ecologically destructive invasive plants from the Asteraceae family. Predicting the potential distribution pattern of two invasive alien Erigeron weeds can provide a scientific basis for prevent the further spread of these two weeds in China under climate change. Methods: Based on historical occurrence datasets and environmental variables, we optimized a MaxEnt model to predict the potential suitable habitats of E. philadelphicus and E. annuus. We also analyzed the shifts of distribution centroids and patterns under climate change scenarios. Results: The key variables that affect the potential geographical distribution of E. annuus and E. philadelphicus, respectively, are temperature seasonality and precipitation of the driest month. Moreover, topsoil sodicity and topsoil salinity also influence the distribution of E. philadelphicus. Under climate change, the overall suitable habitats for both invasive alien Erigeron weeds are expected to expand. The potential geographical distribution of E. annuus exhibited the highest expansion under the SSP245 climate scenario (medium forcing scenarios), whereas E. philadelphicus had the highest expansion under the SSP126 climate scenario (lower forcing scenarios) globally. The future centroid of E. annuus is projected to shift to higher latitudes specifically from Hubei to Hebei, whereas E. philadelphicus remains concentrated primarily in Hubei Province. The overlapping suitable areas of the two invasive alien Erigeron plants mainly occur in Jiangsu, Zhejiang, Fujian, Jiangxi, Hunan, Guizhou, and Chongqing, within China. Discussion: Climate change will enable E. annuus to expand into northeastern region and invade Yunnan Province whereas E. philadelphicus was historically the only suitable species. E. annuus demonstrates a greater potential for invasion and expansion under climate change, as it exhibits higher environmental tolerance. The predictive results obtained in this study can serve as a valuable reference for early warning systems and management strategies aimed at controlling the spread of these two invasive plants.

20.
Biomed Pharmacother ; 160: 114329, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36731343

RESUMEN

P-glycoprotein (P-gp), breast cancer resistance protein (BCRP), and multidrug resistance-associated protein 2 (MRP2) are clinically relevant efflux transporters implicated in the oral absorption of many food and drug substrates. Here, we hypothesised that food intake could influence protein and mRNA intestinal expression of P-gp/abcb1a, BCRP/abcg2, and MRP2/abcc2 differently in male and female Wistar and Sprague Dawley rats. To test this hypothesis, we used enzyme-linked immunosorbent assay (ELISA) and real-time polymerase chain reaction (PCR) to quantify the protein and mRNA intestinal expression of these transporters, respectively. Our study found food and sex differences in P-gp expression, whereby in the fed state P-gp expression decreased in male Wistar rats, but P-gp expression increased in females. In the fed state, BCRP expression increased in both male and female Wistar rats, compared with the fasted state. In contrast, no sex differences or food effect differences were seen in Sprague Dawley rats for P-gp and BCRP expression. On the other hand, in the fed state, MRP2 expression was higher in male and female Wistar and Sprague Dawley rats when compared with the fasted state. Sex differences were also observed in the fasted state. Overall, significant strain differences were reported for P-gp, BCRP and MRP2 expression. Strong to moderate positive linear correlations were found between ELISA and PCR quantification methods. ELISA may be more useful than PCR as it reports protein expression as opposed to transcript expression. Researchers must consider the influence of sex, strain and feeding status in preclinical studies of P-gp, BCRP and MRP2 drug substrates.


Asunto(s)
Proteínas de Transporte de Membrana , Proteínas de Neoplasias , Ratas , Masculino , Femenino , Animales , Ratas Sprague-Dawley , Transportador de Casetes de Unión a ATP, Subfamilia G, Miembro 2/genética , Transportador de Casetes de Unión a ATP, Subfamilia G, Miembro 2/metabolismo , Ratas Wistar , Proteínas de Neoplasias/metabolismo , Subfamilia B de Transportador de Casetes de Unión a ATP , Proteína 2 Asociada a Resistencia a Múltiples Medicamentos , Miembro 1 de la Subfamilia B de Casetes de Unión a ATP/metabolismo , ARN Mensajero/genética , Proteínas Asociadas a Resistencia a Múltiples Medicamentos/genética
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