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1.
Assay Drug Dev Technol ; 19(1): 17-26, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33232610

RESUMEN

B cell maturation antigen (BCMA) is a membrane-bound receptor that is overexpressed on multiple myeloma cells and can be targeted with biotherapeutics. Soluble shed forms of membrane-associated receptors in circulation can act as a drug sink, especially when it is present in high molar ratio compared to drug concentration, potentially derailing the intended pharmacological mechanism and impacting pharmacokinetic (PK) measurements and efficacious dose predictions. In this study, we present a bioanalytical strategy for assessing dynamic levels of total soluble BCMA before and during treatment with a bispecific antibody targeting BCMA and CD3. Implementation of a ligand binding assay was not successful due to extensive bispecific antibody interference. Instead, we explored two types of immunoaffinity (IA) liquid chromatography-tandem mass spectrometry (LC-MS/MS) assays, one at the protein level and one at the surrogate peptide level. Ultimately, the protein-level IA-LC-MS/MS method was optimized for use in a cynomolgus monkey PK/pharmacodynamic study. In addition, we demonstrated that the method was easily adapted for use with human samples in preparation for translation to the clinic. This work demonstrates the benefit of flexibility and agility in bioanalytical method development in early drug development. Multiplatform suitability assessments enable rapid, resource-sparing identification and qualification of clinically translatable assays. We recommend early adoption of this strategy to provide enough time for critical reagent development and assay validation for analysis of shed targets.


Asunto(s)
Anticuerpos Biespecíficos/inmunología , Antígeno de Maduración de Linfocitos B/sangre , Animales , Anticuerpos Biespecíficos/sangre , Antígeno de Maduración de Linfocitos B/inmunología , Cromatografía Liquida , Humanos , Macaca fascicularis , Espectrometría de Masas en Tándem
2.
Bioanalysis ; 13(6): 481-491, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-33724050

RESUMEN

Purpose: Develop a quantitative LC-MS/MS method for FDG, FDG-monophosphate, glucose and glucose-monophosphate in mouse tumor models to assist in validating the use of [18F]FDG-positron emission tomography (PET) imaging for anticancer therapies in a clinical setting. Methodology/results: Analytes were isolated from tumors by protein precipitation and detected on a Sciex API-5500 mass spectrometer. Improved assay robustness and selectivity were achieved through chromatographic separation of FDG-monophosphate from glucose-monophosphate, selection of a unique ion transition and incorporation of stable isotope labeled internal standards. In a mouse JIMT-1 tumor model, FDG-monophosphate levels measured by LC-MS/MS correlated with [18F]FDG-PET imaging results. Conclusion: LC-MS/MS analysis of FDG-monophosphate accumulation in tumors is a cost-effective tool to gauge the translational potential of [18F]FDG-PET imaging as a noninvasive biomarker in clinical studies.


Asunto(s)
Neoplasias de la Mama/diagnóstico , Ramnosa/análogos & derivados , Animales , Neoplasias de la Mama/metabolismo , Cromatografía Liquida , Femenino , Ratones , Tomografía de Emisión de Positrones , Ramnosa/análisis , Ramnosa/metabolismo , Espectrometría de Masas en Tándem
3.
J Am Chem Soc ; 132(28): 9681-7, 2010 Jul 21.
Artículo en Inglés | MEDLINE | ID: mdl-20583795

RESUMEN

Substantial experimental evidence indicates that the mechanical force applied to pull apart non-covalent molecular bonds (such as receptor-ligand pairs) can significantly decrease the bond lifetime. This evidence is often generated in single-molecule experiments that are designed to specifically test effects of pulling forces. However, the effect of compressive forces on the lifetime of receptor-ligand bonds remains largely unexplored. Here we extend the common usage of the atomic force microscopy technique to study whether compressive forces applied to bound streptavidin-biotin species can significantly accelerate the rate of dissociation. Presented experimental data indicate that compressive forces can substantially decrease the lifetime of the molecular bond. Surprisingly, the efficiency of accelerating dissociation by compressive forces sometimes exceeds the enhancement of the dissociation rate measured in pulling experiments, indicating that compressive forces applied to the bound species might be efficiently used to control the lifetime of adhesion bonds.


Asunto(s)
Proteínas/metabolismo , Receptores de Superficie Celular/metabolismo , Ligandos , Microscopía de Fuerza Atómica
4.
Langmuir ; 26(14): 11951-7, 2010 Jul 20.
Artículo en Inglés | MEDLINE | ID: mdl-20496933

RESUMEN

The detection probability of rupture events in AFM force spectroscopy measurements presents a viable alternative to standard methods for extracting kinetic parameters of dissociation. The detection probability has a maximum as a function of the probe velocity where (1) the probability to form a molecular bond is independent of the probe velocity and (2) the detection of rupture events is limited by noise and performed with a constant density of data points per distance of the probe displacement. This newly developed model indicates that the optimal detection velocity is independent of dissociation rate and depends on the distance to the barrier kinetic parameter. Therefore, the kinetic parameters of bond dissociation can be extracted from the dependence of detection probability on probe velocity and the detection threshold. This approach is sensitive to low rupture forces and therefore is complementary to the common most probable force data analysis approach. The developed approach is tested using rupture forces measured with specific bonds between biotin and streptavidin and with nonspecific bonds between linear alkanes in water. Results for the analysis of specific bonds rupture are consistent with the previous measurements, suggesting that rupture forces spanning a wide range of values originate from the same binding potential. Kinetic parameters obtained for linear alkanes are significantly different from previous measurements suggesting possible heterogeneity of the bound state.

5.
AAPS J ; 22(2): 38, 2020 01 29.
Artículo en Inglés | MEDLINE | ID: mdl-31997095

RESUMEN

Blood-based soluble protein biomarkers provide invaluable clinical information about patients and are used as diagnostic, prognostic, and pharmacodynamic markers. The most commonly used blood sample matrices are serum and different types of plasma. In drug development research, the impact of sample matrix selection on successful protein biomarker quantification is sometimes overlooked. The sample matrix for a specific analyte is often chosen based on prior experience or literature searches, without good understanding of the possible effects on analyte quantification. Using a data set of 32 different soluble protein markers measured in matched serum and plasma samples, we examined the differences between serum and plasma and discussed how platelet or immune cell activation can change the quantified concentration of the analyte. We have also reviewed the effect of anticoagulant on analyte quantification. Finally, we provide specific recommendations for biomarker sample matrix selection and propose a systematic and data-driven approach for sample matrix selection. This review is intended to raise awareness of the impact and considerations of sample matrix selection on biomarker quantification.


Asunto(s)
Biomarcadores Farmacológicos/sangre , Análisis Químico de la Sangre , Proteínas Sanguíneas/análisis , Animales , Anticoagulantes/farmacología , Plaquetas/efectos de los fármacos , Plaquetas/metabolismo , Humanos , Leucocitos/efectos de los fármacos , Leucocitos/metabolismo , Valor Predictivo de las Pruebas , Reproducibilidad de los Resultados
6.
Biophys J ; 96(8): 3412-22, 2009 Apr 22.
Artículo en Inglés | MEDLINE | ID: mdl-19383484

RESUMEN

Single molecule force spectroscopy is often used to study the dissociation of single molecules by applying mechanical force to the intermolecular bond. These measurements provide the kinetic parameters of dissociation. We present what to our knowledge is a new atomic force microscopy-based approach to obtain the activation energy of the association reaction and approximate grafting density of reactive receptors using the dependence of the probability to form molecular bonds on probe velocity when one of the interacting molecules is tethered by a flexible polymeric linker to the atomic force microscopy probe. Possible errors in the activation energy measured with this approach are considered and resulting corrections are included in the data analysis. This new approach uses the same experimental setup as traditional force spectroscopy measurements that quantify dissociation kinetics. We apply the developed methodology to measure the activation energy of biotin-streptavidin association (including a contribution from the steric factor) and obtain a value of 8 +/- 1 kT. This value is consistent with the association rate measured previously in solution. Comparison with the solution-derived activation energy indicates that kinetics of biotin-streptavidin binding is mainly controlled by the reaction step.


Asunto(s)
Biotina/metabolismo , Modelos Moleculares , Unión Proteica , Análisis Espectral , Estreptavidina/metabolismo , Algoritmos , Cinética , Microscopía de Fuerza Atómica , Movimiento (Física) , Distribución Normal , Probabilidad , Termodinámica , Incertidumbre
7.
J Pharm Biomed Anal ; 49(2): 311-8, 2009 Feb 20.
Artículo en Inglés | MEDLINE | ID: mdl-19150188

RESUMEN

Developing a process that generates robust immunoassays that can be used to support studies with tight timelines is a common challenge for bioanalytical laboratories. Design of experiments (DOEs) is a tool that has been used by many industries for the purpose of optimizing processes. The approach is capable of identifying critical factors and their interactions with a minimal number of experiments. The challenge for implementing this tool in the bioanalytical laboratory is to develop a user-friendly approach that scientists can understand and apply. We have successfully addressed these challenges by eliminating the screening design, introducing automation, and applying a simple mathematical approach for the output parameter. A modified central composite design (CCD) was applied to three ligand binding assays. The intra-plate factors selected were coating, detection antibody concentration, and streptavidin-HRP concentrations. The inter-plate factors included incubation times for each step. The objective was to maximize the logS/B (S/B) of the low standard to the blank. The maximum desirable conditions were determined using JMP 7.0. To verify the validity of the predictions, the logS/B prediction was compared against the observed logS/B during pre-study validation experiments. The three assays were optimized using the multi-factorial DOE. The total error for all three methods was less than 20% which indicated method robustness. DOE identified interactions in one of the methods. The model predictions for logS/B were within 25% of the observed pre-study validation values for all methods tested. The comparison between the CCD and hybrid screening design yielded comparable parameter estimates. The user-friendly design enables effective application of multi-factorial DOE to optimize ligand binding assays for therapeutic proteins. The approach allows for identification of interactions between factors, consistency in optimal parameter determination, and reduced method development time.


Asunto(s)
Proteínas/uso terapéutico , Proyectos de Investigación , Automatización/estadística & datos numéricos , Avidina/química , Interpretación Estadística de Datos , Ensayo de Inmunoadsorción Enzimática/normas , Ensayo de Inmunoadsorción Enzimática/estadística & datos numéricos , Peroxidasa de Rábano Silvestre/química , Inmunoensayo , Indicadores y Reactivos/química , Ligandos , Luminiscencia , Mediciones Luminiscentes , Modelos Estadísticos , Unión Proteica , Proteínas/química , Proteínas/normas , Proteínas Recombinantes/metabolismo , Reproducibilidad de los Resultados , Estreptavidina/química , Factores de Tiempo
8.
Fetal Diagn Ther ; 25(3): 340-2, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-19776598

RESUMEN

We report the case of an extremely large giant neck teratoma diagnosed on routine sonogram and confirmed by 3-D and 4-D sonography and MRI in a 19-year-old primigravida at 18 weeks. Rapid growth, polyhydramnios, premature contractions and premature rupture of membranes necessitated delivery at 28 weeks. Under general anesthesia, with a multidisciplinary team attendant, efforts by the otolaryngologist to establish an airway during an EXIT (ex utero intrapartum treatment) procedure failed as did subsequent attempts by the neonatologist, leading to an early neonatal death. Although a team approach will increase the likelihood of success in securing the airway during EXIT procedures, it cannot be a guarantor in cases of giant neck teratoma.


Asunto(s)
Neoplasias Faríngeas/diagnóstico por imagen , Teratoma/diagnóstico por imagen , Adulto , Femenino , Humanos , Intubación , Masculino , Neoplasias Faríngeas/patología , Polihidramnios/diagnóstico por imagen , Embarazo , Teratoma/patología , Ultrasonografía Prenatal
9.
Biophys J ; 95(8): 3964-76, 2008 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-18621812

RESUMEN

Force spectroscopy measurements of the rupture of the molecular bond between biotin and streptavidin often results in a wide distribution of rupture forces. We attribute the long tail of high rupture forces to the nearly simultaneous rupture of more than one molecular bond. To decrease the number of possible bonds, we employed hydrophilic polymeric tethers to attach biotin molecules to the atomic force microscope probe. It is shown that the measured distributions of rupture forces still contain high forces that cannot be described by the forced dissociation from a deep potential well. We employed a recently developed analytical model of simultaneous rupture of two bonds connected by polymer tethers with uneven length to fit the measured distributions. The resulting kinetic parameters agree with the energy landscape predicted by molecular dynamics simulations. It is demonstrated that when more than one molecular bond might rupture during the pulling measurements there is a noise-limited range of probe velocities where the kinetic parameters measured by force spectroscopy correspond to the true energy landscape. Outside this range of velocities, the kinetic parameters extracted by using the standard most probable force approach might be interpreted as artificial energy barriers that are not present in the actual energy landscape. Factors that affect the range of useful velocities are discussed.


Asunto(s)
Biotina/metabolismo , Análisis Espectral/métodos , Estreptavidina/metabolismo , Fenómenos Biomecánicos , Simulación por Computador , Cinética , Modelos Moleculares
10.
J Am Chem Soc ; 130(30): 10008-18, 2008 Jul 30.
Artículo en Inglés | MEDLINE | ID: mdl-18597457

RESUMEN

Pairwise interactions between n-alkanes from decane to octadecane in water have been studied by single-molecule force spectroscopy. The interacting molecules are covalently tethered to the glass substrate and to the probe of an atomic force microscope by water-soluble linkers to facilitate single-molecule detection. However, the measured distribution of rupture forces deviates significantly from the distribution predicted by theoretical models for rupture of individual bonds. To describe the statistics of rupture forces, an analytical model that considers near-simultaneous rupture of two bonds loaded by tethers with different lengths is introduced. The common most probable force analysis approach is used for comparison. In both data analyses, the possible systematic errors due to nonlinear elasticity of polymeric tethers and variations in the shape of the potential of mean force were considered. Experimental distributions of rupture forces are well-fit by the two-bond rupture model using a single set of kinetic parameters for different experiments, while the most probable force approach yields parameters that vary significantly for different samples. The measured activation energies for dissociation of alkanes are close to the free energies predicted by cavity models of hydrophobic interactions. The surface free-energy density is estimated to be approximately 21 kJ/(mol nm (2)) and is close to the upper limit of free energies used in the computer simulations of hydrophobic interactions in proteins. In contrast to the predictions of the cavity models, the measured activation energy does not increase monotonically with increase in alkane chain size. To explain this discrepancy and the measured distance to the transition-state barrier (approximately 0.6 nm), it is suggested that alkanes undergo conformational transition to the collapsed state upon dimerization. Change in the alkane conformation from extended to helical has been observed previously for binding of alkanes in water to hydrophobic synthetic receptors. Here, however, conformational change is suggested without geometrical constraints imposed by small cavitands. The proposed collapsed state of the alkane dimers has implications for the kinetics of self-assembly of surfactant micelles.


Asunto(s)
Alcanos/química , Microscopía de Fuerza Atómica/métodos , Modelos Químicos , Agua/química , Dimerización , Cinética , Conformación Molecular , Relación Estructura-Actividad , Termodinámica
11.
Mol Cancer Ther ; 17(12): 2530-2542, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30232146

RESUMEN

Tumors use indoleamine 2,3-dioxygenase-1 (IDO1) as a major mechanism to induce an immunosuppressive microenvironment. IDO1 expression is upregulated in many cancers and considered to be a resistance mechanism to immune checkpoint therapies. IDO1 is induced in response to inflammatory stimuli such as IFNγ and promotes immune tolerance by depleting tryptophan and producing tryptophan catabolites, including kynurenine, in the tumor microenvironment. This leads to effector T-cell anergy and enhanced Treg function through upregulation of FoxP3. As a nexus for the induction of key immunosuppressive mechanisms, IDO1 represents an important immunotherapeutic target in oncology. Here, we report the identification and characterization of the novel selective, orally bioavailable IDO1 inhibitor EOS200271/PF-06840003. It reversed IDO1-induced T-cell anergy in vitro In mice carrying syngeneic tumor grafts, PF-06840003 reduced intratumoral kynurenine levels by over 80% and inhibited tumor growth both in monotherapy and, with an increased efficacy, in combination with antibodies blocking the immune checkpoint ligand PD-L1. We demonstrate that anti-PD-L1 therapy results in increased IDO1 metabolic activity thereby providing additional mechanistic rationale for combining PD-(L)1 blockade with IDO1 inhibition in cancer immunotherapies. Supported by these preclinical data and favorable predicted human pharmacokinetic properties of PF-06840003, a phase I open-label, multicenter clinical study (NCT02764151) has been initiated.


Asunto(s)
Antígeno B7-H1/antagonistas & inhibidores , Biocatálisis , Inhibidores Enzimáticos/farmacología , Inmunoterapia , Indolamina-Pirrol 2,3,-Dioxigenasa/antagonistas & inhibidores , Indoles/farmacología , Succinimidas/farmacología , Animales , Anticuerpos Monoclonales/farmacología , Anticuerpos Monoclonales Humanizados , Antineoplásicos/farmacología , Antígeno B7-H1/metabolismo , Antígeno CTLA-4/metabolismo , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Femenino , Humanos , Indolamina-Pirrol 2,3,-Dioxigenasa/metabolismo , Interferón gamma/metabolismo , Quinurenina/sangre , Linfocitos Infiltrantes de Tumor/efectos de los fármacos , Ratones Endogámicos BALB C , Ratones Endogámicos C57BL , Estereoisomerismo , Especificidad por Sustrato/efectos de los fármacos , Linfocitos T/citología , Linfocitos T/efectos de los fármacos
12.
J Phys Chem B ; 111(8): 1963-74, 2007 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-17284065

RESUMEN

Single-molecule force spectroscopy has become a valuable tool for the investigation of intermolecular energy landscapes for a wide range of molecular associations. Atomic force microscopy (AFM) is often used as an experimental technique in these measurements, and the Bell-Evans model is commonly used in the statistical analysis of rupture forces. Most applications of the Bell-Evans model consider a constant loading rate of force applied to the intermolecular bond. The data analysis is often inconsistent because either the probe velocity or the apparent loading rate is being used as an independent parameter. These approaches provide different results when used in AFM-based experiments. Significant variations in results arise from the relative stiffness of the AFM force sensor in comparison with the stiffness of polymeric tethers that link the molecules under study to the solid surfaces. An analytical model presented here accounts for the systematic errors in force-spectroscopy parameters arising from the nonlinear loading induced by polymer tethers. The presented analytical model is based on the Bell-Evans model of the kinetics of forced dissociation and on the asymptotic models of tether stretching. The two most common data reduction procedures are analyzed, and analytical expressions for the systematic errors are provided. The model shows that the barrier width is underestimated and that the dissociation rate is significantly overestimated when force-spectroscopy data are analyzed without taking into account the elasticity of the polymeric tether. Systematic error estimates for asymptotic freely jointed chain and wormlike chain polymer models are given for comparison. The analytical model based on the asymptotic freely jointed chain stretching is employed to analyze and correct the results of the double-tether force-spectroscopy experiments of disjoining "hydrophobic bonds" between individual hexadecane molecules that are covalently tethered via poly(ethylene glycol) linkers of different lengths to the substrates and to the AFM probes. Application of the correction algorithm decreases the spread of the data from the mean value, which is particularly important for measurements of the dissociation rate, and increases the barrier width to 0.43 nm, which might be indicative of the theoretically predicted hydrophobic dewetting.

13.
Clin Cancer Res ; 12(11 Pt 1): 3408-15, 2006 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-16740765

RESUMEN

PURPOSE: To evaluate the effects of the novel protein kinase C (PKC) inhibitor enzastaurin on intracellular phosphoprotein signaling using flow cytometry and to use this approach to measure enzastaurin effects on surrogate target cells taken from cancer patients that were orally dosed with this agent. EXPERIMENTAL DESIGN: The activity of PKC was assayed in intact cells using a modification of published techniques. The U937 cell line and peripheral blood mononuclear cells were stimulated with phorbol ester, fixed, permeabilized, and reacted with an antibody specific for the phosphorylated forms of PKC substrates. The processed samples were quantitatively analyzed using flow cytometry. The assay was validated for selectivity, sensitivity, and reproducibility. Finally, blood was obtained from volunteer cancer patients before and after receiving once daily oral doses of enzastaurin. These samples were stimulated ex vivo with phorbol ester and were assayed for PKC activity using this approach. RESULTS: Assay of U937 cells confirmed the selectivity of the antibody reagent and enzastaurin for PKC. Multiparametric analysis of peripheral blood mononuclear cells showed monocytes to be the preferred surrogate target cell. Day-to-day PKC activity in normal donors was reproducible. Initial results showed that five of six cancer patients had decreased PKC activity following enzastaurin administration. In a following study, a group of nine patients displayed a significant decrease in PKC activity after receiving once daily oral doses of enzastaurin. CONCLUSION: An inhibition of surrogate target cell PKC activity was observed both in vitro and ex vivo after exposure to the novel kinase inhibitor, enzastaurin.


Asunto(s)
Protocolos de Quimioterapia Combinada Antineoplásica/farmacología , Biomarcadores/análisis , Inhibidores Enzimáticos/farmacología , Indoles/farmacología , Neoplasias/tratamiento farmacológico , Proteína Quinasa C/antagonistas & inhibidores , Protocolos de Quimioterapia Combinada Antineoplásica/administración & dosificación , Biomarcadores/metabolismo , Capecitabina , Línea Celular Tumoral , Ensayos Clínicos Fase I como Asunto/estadística & datos numéricos , Desoxicitidina/administración & dosificación , Desoxicitidina/análogos & derivados , Desoxicitidina/farmacología , Activadores de Enzimas/farmacología , Inhibidores Enzimáticos/administración & dosificación , Citometría de Flujo , Fluorouracilo/administración & dosificación , Fluorouracilo/análogos & derivados , Fluorouracilo/farmacología , Estudios de Seguimiento , Humanos , Indoles/administración & dosificación , Indoles/farmacocinética , Leucocitos Mononucleares/efectos de los fármacos , Leucocitos Mononucleares/enzimología , Monocitos/efectos de los fármacos , Monocitos/enzimología , Proteína Quinasa C/inmunología , Proteína Quinasa C beta , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Transducción de Señal/efectos de los fármacos , Transducción de Señal/inmunología , Relación Estructura-Actividad , Resultado del Tratamiento
14.
J Phys Chem B ; 110(35): 17578-83, 2006 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-16942101

RESUMEN

The hydrophobic effect is important for many biological and technological processes. Despite progress in theory, experimental data clarifying water structure and the interaction between hydrophobic solutes at the nanometer scale are scarce due to the very low solubility of hydrophobic species. This article describes an AFM single molecule force spectroscopy method to probe the interaction between molecules with low solubility and reports measurements of the strength and the length scale of the "hydrophobic bond" between hexadecane molecules. Hexadecane molecules are tethered by flexible poly(ethylene glycol) linkers to AFM probes and substrates, removing the aggregation state uncertainty of solution-based approaches as well as spurious surface effects. A shorter hydrophilic polymer layer is added to increase the accessibility of hydrophobic molecules for the force spectroscopy measurements. Statistical analysis of the rupture forces yields a barrier width of 0.24 nm, and a dissociation rate of 1.1 s(-1). The results of single molecule measurements are related to the theoretical predictions of the free energy of cavitation in water and to the empirical model of micellization of nonionic surfactants. It is estimated that approximately one-quarter of each molecule's surface is hydrated during forced dissociation, consistent with an extended (nonglobular) conformation of the hexadecane molecules in the dimer.


Asunto(s)
Química Física/métodos , Alcanos/química , Dimerización , Interacciones Hidrofóbicas e Hidrofílicas , Microscopía de Fuerza Atómica , Modelos Teóricos , Conformación Molecular , Polímeros/química , Probabilidad , Espectrofotometría , Espectroscopía Infrarroja por Transformada de Fourier/métodos , Tensoactivos/química , Temperatura , Termodinámica , Agua/química
15.
J Pharm Biomed Anal ; 41(1): 189-95, 2006 Apr 11.
Artículo en Inglés | MEDLINE | ID: mdl-16321496

RESUMEN

PURPOSE: Measurements of cytokine release in whole blood after ex vivo stimulation are useful in drug development. The components contributing to variation within such assays have not been clearly defined. Therefore, we characterized the sources of variability within an ex vivo stimulation assay for TNF-alpha release. METHOD: Fresh whole blood or mononuclear cells from a cell preparation tube were added to silanized, screw-top tubes with a final concentration of 1 microg/mL lipopolysaccharide (LPS). Each tube was purged with 95% air/5%CO2 and incubated 4 or 6 h at 37 degrees C in a metabolic water bath. Plasma TNF-alpha was next measured in supernatants by immunoassay. Total method variability was assessed in 10 normal donors each drawn in the morning and afternoon over 3 days. Four additional samples were pre-treated with dexamethasone to investigate inhibition of TNF-alpha release. RESULTS: Our analysis indicated precise temperature control, the timing and duration of stimulation, and the surface properties of the stimulation vessel most significantly influenced assay performance. A comparison of multiple anticoagulants indicated that careful consideration should be taken in selecting the optimal anticoagulant. The estimated total assay CV for all anticoagulants tested was less than 33.81%. The analytical variability (stimulation and measurement) was less than 25.88% CV. The one exception was mononuclear cells collected in sodium heparin. The total variability estimate incorporated day-to-day, diurnal, inter-donor, tube-to-tube and immunoassay variability. Using our optimized conditions, TNF-alpha release was inhibited by dexamethasone with a mean IC50 of 33.3 +/- 4.6 nM. CONCLUSIONS: We have described an optimal set of conditions for collection, storage and processing of an ex vivo cytokine stimulation assay. These conditions were selected for operational feasibility, minimal imprecision and elimination of potential confounding factors. The end result is a more robust method that can be applied to clinical drug development.


Asunto(s)
Técnicas de Química Analítica/métodos , Química Farmacéutica/métodos , Citocinas/química , Anticoagulantes/farmacología , Citocinas/análisis , Citocinas/sangre , Dexametasona/farmacología , Diseño de Fármacos , Humanos , Inmunoensayo/métodos , Concentración 50 Inhibidora , Lipopolisacáridos/metabolismo , Temperatura , Factor de Necrosis Tumoral alfa/análisis , Factor de Necrosis Tumoral alfa/metabolismo
16.
AAPS J ; 18(6): 1366-1372, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-27514862

RESUMEN

With the growing focus on translational research and the use of biomarkers to drive drug development and approvals, biomarkers have become a significant area of research within the pharmaceutical industry. However, until the US Food and Drug Administration's (FDA) 2013 draft guidance on bioanalytical method validation included consideration of biomarker assays using LC-MS and LBA, those assays were created, validated, and used without standards of performance. This lack of expectations resulted in the FDA receiving data from assays of varying quality in support of efficacy and safety claims. The AAPS Crystal City VI (CC VI) Workshop in 2015 was held as the first forum for industry-FDA discussion around the general issues of biomarker measurements (e.g., endogenous levels) and specific technology strengths and weaknesses. The 2-day workshop served to develop a common understanding among the industrial scientific community of the issues around biomarkers, informed the FDA of the current state of the science, and will serve as a basis for further dialogue as experience with biomarkers expands with both groups.


Asunto(s)
Bioensayo/normas , Industria Farmacéutica/normas , Educación/normas , Control de Calidad , Informe de Investigación/normas , United States Food and Drug Administration/normas , Bioensayo/tendencias , Biomarcadores , Industria Farmacéutica/tendencias , Educación/tendencias , Humanos , Reproducibilidad de los Resultados , Informe de Investigación/tendencias , Estados Unidos , United States Food and Drug Administration/tendencias , Virginia
17.
AAPS J ; 18(5): 1300-1308, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27401185

RESUMEN

There are many sources of analytical variability in ligand binding assays (LBA). One strategy to reduce variability has been duplicate analyses. With recent advances in LBA technologies, it is conceivable that singlet analysis is possible. We retrospectively evaluated singlet analysis using Gyrolab data. Relative precision of duplicates compared to singlets was evaluated using 60 datasets from toxicokinetic (TK) or pharmacokinetic (PK) studies which contained over 23,000 replicate pairs composed of standards, quality control (QC), and animal samples measured with 23 different bioanalytical assays. The comparison was first done with standard curve and QCs followed by PK parameters (i.e., Cmax and AUC). Statistical analyses were performed on combined duplicate versus singlets using a concordance correlation coefficient (CCC), a measurement used to assess agreement. Variance component analyses were conducted on PK estimates to assess the relative analytical and biological variability. Overall, 97.5% of replicate pairs had a %CV of <11% and 50% of the results had a %CV of ≤1.38%. There was no observable bias in concentration comparing the first replicate with the second (CCC of 0.99746 and accuracy value of 1). The comparison of AUC and Cmax showed no observable difference between singlet and duplicate (CCC for AUC and Cmax >0.99999). Analysis of variance indicated an AUC inter-subject variability 35.3-fold greater than replicate variability and 8.5-fold greater for Cmax. Running replicates from the same sample will not significantly reduce variation or change PK parameters. These analyses indicated the majority of variance was inter-subject and supported the use of a singlet strategy.


Asunto(s)
Bases de Datos Factuales , Estudios de Factibilidad , Ligandos , Preparaciones Farmacéuticas/metabolismo , Estadística como Asunto/métodos , Animales , Haplorrinos , Ratones , Preparaciones Farmacéuticas/análisis , Unión Proteica/fisiología , Ratas , Estudios Retrospectivos
18.
J Pharm Biomed Anal ; 36(5): 1037-44, 2005 Jan 04.
Artículo en Inglés | MEDLINE | ID: mdl-15620530

RESUMEN

Quantification of biomarkers can provide important information about the safety and efficacy of candidate drugs. Unfortunately, limited sample volume and excess costs often limit analysis of multiple biomarkers. We developed, optimized, validated, and implemented a multiplex immunoassay for simultaneous measurement of multiple circulating cytokines: IL-1beta, TNFalpha, IL-6, IL-8, and IL-10. Multiplex immuoassays were performed using the Luminex LabMAP instrument. Capture antibodies for each cytokine were covalently bound to distinct microsphere subsets distinguished by differing dye ratios. The concentration of each individual cytokine determined by measuring orange fluorescence produced by a complex of a biotinylated cytokine-specific antibody and streptavidin-phycoerythrin. The lower limit of quantification for all assays was 20 pg/mL with the exception of IL-8 which was 100 pg/mL. The inter-assay precision was less than 25%CV for all analytes at all control levels both pre-study and in-study. The percent recovery ranged from 83 to 108% pre-study and 90 to 125% in-study. In a linearity assessment, a 15,000 pg/mL multi-analyte control could be diluted 1:50 and maintain expected accuracy. We measured the cytokine concentrations in more than 2000 serum samples from patients with sepsis. Multiplex results for IL-6 were compared to a conventional commercially available ELISA kit. The degree of agreement between the two methods as measured by the concordance correlation coefficient was 84.5%. Multiplex results were 2.36-fold higher than ELISA values on the average. After adjusting for this mean difference, the 95% empirical limits of agreement for the ratio of individual sample values were 0.33, 2.65. This multiplex immunoassay provided simultaneous measurement of circulating cytokines using 80% less patient specimen compared to traditional approaches and at a significantly decreased cost. Efficient use of this platform requires process improvements to fully maximize the positive impact of multiplex assays in clinical drug development.


Asunto(s)
Citocinas/sangre , Humanos , Inmunoensayo/métodos , Inmunoensayo/normas
20.
Bioanalysis ; 5(23): 2903-18, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24107004

RESUMEN

The 2013 7th Workshop on Recent Issues in Bioanalysis was held in Long Beach, California, USA, where close to 500 professionals from pharmaceutical and biopharmaceutical companies, CROs and regulatory agencies convened to discuss current topics of interest in bioanalysis. These 'hot' topics, which covered both small and large molecules, were the starting point for fruitful exchanges of knowledge, and sharing of ideas among speakers, panelists and attendees. The discussions led to specific recommendations pertinent to bioanalytical science. Such as the previous editions, this 2013 White Paper addresses important bioanalytical issues and provides practical answers to the topics presented, discussed and agreed upon by the global bioanalytical community attending the 7th Workshop on Recent Issues in Bioanalysis.


Asunto(s)
Descubrimiento de Drogas/métodos , Animales , Bioquímica/métodos , Bioquímica/normas , Biomarcadores Farmacológicos/análisis , California , Técnicas de Química Analítica/métodos , Técnicas de Química Analítica/normas , Aprobación de Drogas/métodos , Descubrimiento de Drogas/normas , Humanos , Farmacocinética , Estudios de Validación como Asunto
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