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1.
Epidemiol Infect ; 144(16): 3461-3473, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27571926

RESUMEN

Adenoviruses are found everywhere in the environment, and cause various health problems including symptoms of enteric illness, and respiratory illness. Despite their significance to public health, few studies have addressed the health risks associated with exposure to adenovirus. Human challenge studies have been published for a few adenoviruses, which involved exposure through oral ingestion, inhalation, intranasal and intraocular droplet inoculation. Nothwithstanding the different symptoms resulting from such exposures, infection can be defined as colonization of a corresponding mucosa. A two-level dose-response model was developed to describe the distributions of infectivity and pathogenicity in various challenge studies of adenovirus, incorporating differences in inoculation route as shift in average infectivity and pathogenicity. This dose-response model can be used to make predictions for the infectivity of adenovirus, specific to any of the four studied inoculation methods. The generalized adenovirus dose-response relationship for infection and acute illness takes into account variation in infectivity and/or pathogenicity across adenovirus types, as well as uncertainty due to limited data.

2.
Appl Environ Microbiol ; 79(20): 6423-8, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23934500

RESUMEN

The circulation of human parechoviruses (HPeVs) in the population was studied by environmental surveillance comprising of molecular analyses of sewage samples (n = 89) that were collected from 15 different locations in The Netherlands. Samples were taken from sewage originating from schools (n = 9) or from parts of municipalities (n = 6) during the Dutch school year 2010-2011. At 13/15 locations HPeV1, HPeV3, or HPeV6 RNA was detected at least once; however, sequence diversity did not reflect associations in time or place. A higher percentage of positives was observed in the samples originating from the municipalities. It was demonstrated that HPeV circulated in the studied population to a higher extent than would be expected from the current knowledge on infections predominating in young children.


Asunto(s)
Parechovirus/clasificación , Parechovirus/aislamiento & purificación , Aguas del Alcantarillado/virología , Ciudades , Variación Genética , Genotipo , Humanos , Datos de Secuencia Molecular , Países Bajos , Parechovirus/genética , ARN Viral/genética , Instituciones Académicas , Análisis de Secuencia de ADN
3.
J Water Health ; 11(2): 256-66, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23708573

RESUMEN

Molecular methods are increasingly applied for virus detection in environmental samples without rendering data on viral infectivity. Infectivity data are important for assessing public health risks from exposure to human pathogenic viruses in the environment. Here, treatment efficiencies of three (drinking) water treatment processes were estimated by quantification of the indicator virus bacteriophage MS2 with culture and real-time reverse transcription polymerase chain reaction (qRT-PCR). We studied the virus reduction by slow sand filtration at a pilot plant. No decay of MS2 RNA was observed, whereas infectious MS2 particles were inactivated at a rate of 0.1 day(-1). Removal of MS2 RNA and infectious MS2 particles was 1.2 and 1.6 log10-units, respectively. Virus reduction by UV and gamma irradiation was determined in laboratory-scale experiments. The reduction of MS2 RNA based on qRT-PCR data was negligible. Reduction of infectious MS2 particles was estimated at 3.0-3.6 log10-units (UV dose up to 400 or 800 J/m(2)) and 4.7-7 log10-units (gamma dose up to 200 Gray). As shown in this study, estimations of viral reduction, both inactivation and removal, obtained by molecular methods should be interpreted carefully when considering treatment options to provide virus-safe drinking water. Combining culture-based methods with molecular methods may provide supplementary information on mechanisms of virus reduction.


Asunto(s)
Filtración/métodos , Levivirus/efectos de la radiación , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Microbiología del Agua , Filtración/instrumentación , Rayos gamma , Levivirus/fisiología , Dióxido de Silicio , Cultivo de Virus , Purificación del Agua
4.
Appl Environ Microbiol ; 78(11): 3800-5, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-22447593

RESUMEN

The progress of the Global Polio Eradication Initiative is monitored by acute flaccid paralysis (AFP) surveillance supplemented with environmental surveillance in selected areas. To assess the sensitivity of environmental surveillance, stools from (re)vaccinated elderly persons with a low seroprevalence and from wastewater were concurrently collected and analyzed in the Netherlands over a prolonged period of time. A total number of 228 healthy individuals with different levels of immunity were challenged with monovalent oral polio vaccine serotype 1 or 3. Poliovirus concentrations were determined by the titration of fecal suspensions on poliovirus-sensitive L20B cells and of sewage concentrates by L20B monolayer plaque assay. Almost half of the individuals (45%) shed poliovirus on day 3 after challenge, which peaked (57%) on day 8 with an average poliovirus excretion of 1.3 × 10(5) TCID(50) per g of feces and gradually decreased to less than 5% on day 42. The virus concentrations in sewage peaked on days 6 to 8 at approximately 100 PFU per liter, remained high until day 14, and subsequently decreased to less than 10 PFU per liter on day 29. The estimated poliovirus concentration in sewage approximated the measured initial virus excretion in feces, within 1 log(10) variation, resulting in a sensitivity of detection of 100 infected but mostly asymptomatic individuals in tens of thousands of individuals. An additional second peak observed in sewage may indicate secondary transmission missed by enterovirus or AFP surveillance in patients. This enables the detection of circulating poliovirus by environmental surveillance, supporting its feasibility as an early warning system.


Asunto(s)
Monitoreo del Ambiente/métodos , Parálisis/prevención & control , Poliomielitis/prevención & control , Poliovirus/inmunología , Vigilancia de la Población/métodos , Anciano , Anciano de 80 o más Años , Animales , Línea Celular , Monitoreo Epidemiológico , Heces/virología , Femenino , Humanos , Masculino , Ratones , Persona de Mediana Edad , Países Bajos/epidemiología , Parálisis/epidemiología , Parálisis/inmunología , Parálisis/virología , Poliomielitis/epidemiología , Poliomielitis/inmunología , Poliomielitis/virología , Poliovirus/aislamiento & purificación , Vacuna Antipolio Oral/administración & dosificación , Vacuna Antipolio Oral/inmunología , Estudios Seroepidemiológicos , Aguas del Alcantarillado/virología
5.
Appl Environ Microbiol ; 77(4): 1383-8, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21183638

RESUMEN

To gain information on laboratory hygiene in contained-use laboratories, a method was developed to study the presence of microorganisms on laboratory equipment. Focusing detection on genetically modified organisms (GMOs) containing the universal M13 primer binding sites enabled the detection of a broad range of GMOs using a single PCR. Swabbing surfaces in three different contained-use laboratories led to detection of M13-containing PCR products in 26 out of 34 swabs. Most sequences (up to five per sample) were detected in swabs from the centrifuge and sink, followed by swabs taken from the bin and incubator (up to four sequences per sample). The obtained sequences varied in length from 171 nucleotides (nt) to 878 nt. In most cases, sequences were only partially similar to sequences published in GenBank. The lengths of the regions with high similarity varied from 94 nt to 795 nt, and these similarities ranged from 81% to 100%. Similarities with more than one sequence were commonly found, complicating the identification of detected sequences. Nonetheless, 84% of the detected sequences were actually handled in the laboratory at the time of sampling. This demonstrates that the method may be used as a quality control tool to assess the efficacy of decontamination and cleaning of commonly used surfaces, such as laboratory benches, freezer doors, and centrifuge rotors, without prior knowledge of the identity or characteristics of the GMOs.


Asunto(s)
Contención de Riesgos Biológicos , Contaminación de Equipos , Higiene , Laboratorios , Secuencia de Bases , Técnicas de Laboratorio Clínico , Descontaminación , Desinfección , Técnicas de Amplificación de Ácido Nucleico , Organismos Modificados Genéticamente , Reacción en Cadena de la Polimerasa , Control de Calidad
6.
Appl Environ Microbiol ; 76(17): 5965-71, 2010 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-20622124

RESUMEN

The quality of drinking water in The Netherlands has to comply with the Dutch Drinking Water Directive: less than one infection in 10,000 persons per year may occur due to consumption of unboiled drinking water. Since virus concentrations in drinking waters may be below the detection limit but entail a public health risk, the infection risk from drinking water consumption requires the assessment of the virus concentrations in source waters and of the removal efficiency of treatment processes. In this study, samples of source waters were taken during 4 years of regular sampling (1999 to 2002), and enteroviruses, reoviruses, somatic phages, and F-specific phages were detected in 75% (range, 0.0033 to 5.2 PFU/liter), 83% (0.0030 to 5.9 PFU/liter), 100% (1.1 to 114,156 PFU/liter), and 97% (0.12 to 14,403 PFU/liter), respectively, of 75 tested source water samples originating from 10 locations for drinking water production. By endpoint dilution reverse transcription-PCR (RT-PCR), 45% of the tested source water samples were positive for norovirus RNA (0.22 to 177 PCR-detectable units [PDU]/liter), and 48% were positive for rotavirus RNA (0.65 to 2,249 PDU/liter). Multiple viruses were regularly detected in the source water samples. A significant correlation between the concentrations of the two phages and those of the enteroviruses could be demonstrated. The virus concentrations varied greatly between 10 tested locations, and a seasonal effect was observed. Peak concentrations of pathogenic viruses occur in source waters used for drinking water production. If seasonal and short-term fluctuations coincide with less efficient or failing treatment, an unacceptable public health risk from exposure to this drinking water may occur.


Asunto(s)
Bacteriófagos/aislamiento & purificación , Enterovirus/aislamiento & purificación , Reoviridae/aislamiento & purificación , Microbiología del Agua , Países Bajos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Carga Viral , Ensayo de Placa Viral , Virosis/prevención & control , Purificación del Agua/normas
7.
Appl Environ Microbiol ; 75(4): 1050-7, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19074604

RESUMEN

Since the transmission of pathogenic viruses via water is indistinguishable from the transmission via other routes and since the levels in drinking water, although significant for health, may be too low for detection, quantitative viral risk assessment is a useful tool for assessing disease risk due to consumption of drinking water. Quantitative viral risk assessment requires information concerning the ability of viruses detected in drinking water to infect their host. To obtain insight into the infectivity of viruses in relation to the presence of virus genomes, inactivation of three different enteroviruses in artificial ground and surface waters under different controlled pH, temperature, and salt conditions was studied by using both PCR and cell culture over time. In salt-peptone medium, the estimated ratio of RNA genomes to infectious poliovirus 1 in freshly prepared suspensions was about 10(0). At 4 degrees C this ratio was 10(3) after 600 days, and at 22 degrees C it was 10(4) after 200 days. For poliovirus 1 and 2 the RNA/infectious virus ratio was higher in artificial groundwater than in artificial surface water, but this was not the case for coxsackievirus B4. When molecular detection is used for virus enumeration, it is important that the fraction of infectious virus (based on all virus genomes detected) decays with time, especially at temperatures near 22 degrees C.


Asunto(s)
Enterovirus/crecimiento & desarrollo , Enterovirus/aislamiento & purificación , Agua Dulce/virología , Viabilidad Microbiana , ARN Viral/aislamiento & purificación , Inactivación de Virus , Antivirales/farmacología , Técnicas de Cultivo de Célula , Enterovirus/genética , Enterovirus Humano B/genética , Enterovirus Humano B/crecimiento & desarrollo , Enterovirus Humano B/aislamiento & purificación , Concentración de Iones de Hidrógeno , Poliovirus/genética , Poliovirus/crecimiento & desarrollo , Poliovirus/aislamiento & purificación , Reacción en Cadena de la Polimerasa , Sales (Química)/farmacología , Temperatura
8.
J Appl Microbiol ; 107(1): 97-105, 2009 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-19302334

RESUMEN

AIMS: To assess public health risks of rotavirus via drinking water consumption, a cell culture-PCR assay was developed and optimized for the detection of infectious environmental rotavirus strains in naturally contaminated source waters for drinking water production. METHODS AND RESULTS: Infectious rotavirus concentrations were estimated by an optimized cell culture-PCR assay as most probable numbers by using the presence or absence of replicated virus in different sample volumes. Infectious rotavirus was detected in 11 of 12 source water samples in concentrations varying from 0.19 (0.01-0.87) to 8.3 (1.8-34.0) infectious PCR detectable units per litre (IPDU/l), which was not significantly different from the concentrations of infectious enterovirus in these samples. CONCLUSIONS: In 55% of the samples, rotavirus genomes were 1000 to 10 000 times (3 log(10)-4 log(10)) more abundantly present than infectious rotavirus particles, whereas in the remaining 45% of the samples, rotavirus genomes were less than 1000 times (<3 log(10)) more abundantly present. SIGNIFICANCE AND IMPACT OF THE STUDY: The broad variation observed in the ratios of rotavirus RNA and infectious particles demonstrates the importance of detecting infectious viruses instead of viral RNA for the purposes involving estimations of public health risks.


Asunto(s)
Ríos/virología , Rotavirus/aislamiento & purificación , Microbiología del Agua , Células CACO-2/virología , Línea Celular , Humanos , Salud Pública , ARN Viral/aislamiento & purificación , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Rotavirus/genética , Rotavirus/patogenicidad , Abastecimiento de Agua
9.
Water Res ; 43(2): 395-404, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19036398

RESUMEN

Removal or inactivation of viruses in drinking water treatment processes can be quantified by measuring the concentrations of viruses or virus indicators in water before and after treatment. Virus reduction is then calculated from the ratio of these concentrations. Most often only the average reduction is reported. That is not sufficient when treatment efficiency must be characterized in quantitative risk assessment. We present three simple models allowing statistical analysis of series of counts before and after treatment: distribution of the ratio of concentrations, and distribution of the probability of passage for unpaired and paired water samples. Performance of these models is demonstrated for several processes (long and short term storage, coagulation/filtration, coagulation/sedimentation, slow sand filtration, membrane filtration, and ozone disinfection) using microbial indicator data from full-scale treatment processes. All three models allow estimation of the variation in (log) reduction as well as its uncertainty; the results can be easily used in risk assessment. Although they have different characteristics and are present in vastly different concentrations, different viruses and/or bacteriophages appear to show similar reductions in a particular treatment process, allowing generalization of the reduction for each process type across virus groups. The processes characterized in this paper may be used as reference for waterborne virus risk assessment, to check against location specific data, and in case no such data are available, to use as defaults.


Asunto(s)
Virus , Microbiología del Agua/normas , Purificación del Agua/métodos , Abastecimiento de Agua/normas , Desinfectantes/farmacología , Desinfección/métodos , Filtración/instrumentación , Filtración/métodos , Membranas Artificiales , Ozono , Medición de Riesgo
10.
Int J Food Microbiol ; 288: 82-90, 2019 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-29229293

RESUMEN

Hepatitis A virus (HAV) and norovirus are important agents of food-borne human viral illness, with common vehicles including bivalve molluscan shellfish, soft fruit and various vegetables. Outbreaks of viral illness due to contamination of the surfaces of foods, or food preparation surfaces by for example infected food handlers are also common. Virus analysis of food matrices can contribute towards risk management for these hazards and a two-part technical specification for determination of Hepatitis A virus and norovirus in food matrices (ISO/TS 15216:2013) was published jointly by the European Committee for Standardisation and the International Organization for Standardization in 2013. As part of the European Mandate No. M381 to validate 15 standards in the field of food microbiology, an international validation study involving 18 laboratories from 11 countries in Europe was conducted between 2012 and 2014. This study aimed to generate method characteristics including limit of detection, limit of quantification, repeatability and reproducibility for ISO 15216 - Part 1, the method for quantification, in seven food matrices. The organization and results of this study, including observations that led to improvements in the standard method are presented here. After its conclusion, the method characteristics generated were added to the revised international standard, ISO 15216-1:2017, published in March 2017.


Asunto(s)
Microbiología de Alimentos/métodos , Virus de la Hepatitis A/fisiología , Norovirus/fisiología , Animales , Bivalvos/virología , Unión Europea , Frutas/virología , Virus de la Hepatitis A/genética , Virus de la Hepatitis A/aislamiento & purificación , Humanos , Límite de Detección , Norovirus/genética , Norovirus/aislamiento & purificación , Reproducibilidad de los Resultados , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Mariscos/virología , Verduras/virología
11.
Euro Surveill ; 13(24)2008 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-18761943

RESUMEN

In the summer of 2006, several cruise-related viral gastroenteritis outbreaks were reported in Europe. One report came from a river-cruise, belonging to a ship-owner who had two other ships with outbreaks. This situation warranted onsite investigation in order to identify a potential common source of infection. A retrospective cohort study was performed among 137 people on board. Epidemiological questionnaire data were analysed using logistic regression. Stool, food, water and surface samples were collected for norovirus detection. Norovirus GGII.4-2006b was responsible for 48 gastroenteritis cases on this ship as confirmed in six patients. Identical norovirus sequences were detected in stool samples, on surfaces and in tap water. Epidemiological and microbiological data indicated multiple exposures contributing to the outbreak. Microbiological results demonstrated person-to-person transmission to be clearly present. Epidemiological results indicated that consuming tap water was a risk factor; however, this could not be concluded definitively on the basis of the available data. A common source for all cruise-related outbreaks was unlikely. The ongoing outbreaks on this ship demonstrated that evidence based guidelines on effective disinfection strategies are needed.


Asunto(s)
Infecciones por Caliciviridae/epidemiología , Infecciones por Caliciviridae/virología , Trazado de Contacto/estadística & datos numéricos , Brotes de Enfermedades/estadística & datos numéricos , Gastroenteritis/epidemiología , Gastroenteritis/virología , Norovirus/aislamiento & purificación , Viaje/estadística & datos numéricos , Infecciones por Caliciviridae/transmisión , Transmisión de Enfermedad Infecciosa/estadística & datos numéricos , Europa (Continente)/epidemiología , Humanos , Incidencia , Vigilancia de la Población , Medición de Riesgo/métodos , Factores de Riesgo , Ríos
12.
Food Environ Virol ; 9(1): 72-78, 2017 03.
Artículo en Inglés | MEDLINE | ID: mdl-27709435

RESUMEN

This study condenses data acquired during investigations of the virological quality of irrigation water used in production of fresh produce. One hundred and eight samples of irrigation water were collected from five berry fruit farms in Finland (1), the Czech Republic (1), Serbia (2), and Poland (1), and sixty-one samples were collected from three leafy green vegetable farms in Poland, Serbia, and Greece. Samples were analyzed for index viruses of human or animal fecal contamination (human and porcine adenoviruses, and bovine polyoma viruses), and human pathogenic viruses (hepatitis A virus, hepatitis E virus, and noroviruses GI/GII). Both index and pathogenic viruses were found in irrigation water samples from the leafy green vegetables production chain. The data on the presence of index viruses indicated that the highest percentage of fecal contamination was of human origin (28.1 %, 18/64), followed by that of porcine (15.4 %, 6/39) and bovine (5.1 %, 2/39) origins. Hepatitis E virus (5 %, 1/20) and noroviruses GII (14.3 %, 4/28) were also detected. Samples from berry fruit production were also positive for both index and pathogenic viruses. The highest percentage of fecal contamination was of human origin (8.3 %, 9/108), followed by that of porcine, 4.5 % (4/89) and bovine, 1.1 % (1/89) origins. Norovirus GII (3.6 %, 2/56) was also detected. These data demonstrate that irrigation water used in primary production is an important vehicle of viral contamination for fresh produce, and thus is a critical control point which should be integrated into food safety management systems for viruses. The recommendations of Codex Alimentarius, as well as regulations on the use of water of appropriate quality for irrigation purposes, should be followed.


Asunto(s)
Contaminación de Alimentos/análisis , Agua Dulce/virología , Frutas/virología , Hojas de la Planta/virología , Verduras/virología , Virus/aislamiento & purificación , Riego Agrícola , Europa (Continente) , Agua Dulce/química , Frutas/crecimiento & desarrollo , Hojas de la Planta/crecimiento & desarrollo , Verduras/crecimiento & desarrollo , Virus/clasificación , Virus/genética
13.
Cell Death Differ ; 6(10): 976-86, 1999 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-10556975

RESUMEN

In the past few years, a role for apoptotic processes in the development of autoimmune diseases has been suggested. An increasing number of cellular proteins, which are modified during apoptosis, has been described, and many of these proteins have been identified as autoantigens. We have studied the effects of apoptosis on the La protein in more detail and for the first time demonstrate that this autoantigen is rapidly dephosphorylated after the induction of apoptosis. Dephosphorylation of the La protein was observed after induction of apoptosis by several initiators and in various cell types. Furthermore, we demonstrate that at least a subset of the La protein is proteolytically cleaved in vivo, generating a 45 kDa fragment. Dephosphorylation as well as cleavage of La is inhibited by ZnSO4 as well as by several tetrapeptide caspase inhibitors, indicating that these processes require the activation of caspases. Dephosphorylation of La is inhibited by low concentrations of okadaic acid, suggesting that a PP2A-like phosphatase is involved. Generation of the 45 kDa fragment is consistent with proteolytic cleavage at amino acids 371 and/or 374. The possible significance of the apoptotic changes in the La protein for autoantibody production is discussed.


Asunto(s)
Apoptosis/fisiología , Autoantígenos/genética , Autoantígenos/inmunología , Autoantígenos/metabolismo , ARN/biosíntesis , Ribonucleoproteínas/genética , Ribonucleoproteínas/metabolismo , Secuencia de Aminoácidos , Animales , Anisomicina/farmacología , Antiinflamatorios/farmacología , Apoptosis/efectos de los fármacos , Autoantígenos/efectos de los fármacos , Inhibidores de Caspasas , Caspasas/fisiología , Técnicas de Cultivo de Célula , Dactinomicina/farmacología , Dexametasona/farmacología , Inhibidores Enzimáticos/farmacología , Datos de Secuencia Molecular , Ácido Ocadaico/farmacología , Fosforilación , Inhibidores de la Síntesis de la Proteína/farmacología , Ribonucleoproteínas/efectos de los fármacos , Rayos Ultravioleta , Antígeno SS-B
14.
J Mol Biol ; 281(4): 593-608, 1998 Aug 28.
Artículo en Inglés | MEDLINE | ID: mdl-9710533

RESUMEN

In vertebrates the synthesis of ribosomal proteins is co-ordinately regulated at the translational level. The 5'-untranslated region (5'UTR) of this class of mRNAs contains conserved regions that are necessary and sufficient for translational regulation. Recently, we found that two proteins, the Xenopus laevis La autoantigen and the cellular nucleic acid binding protein (CNBP), are able to bind in vitro a pyrimidine tract at the 5' end and a downstream region, respectively. These regions are considered the common cis-acting elements of translational regulation. It was previously observed that the binding of both these putative trans-acting factors to their RNA sequences is assisted by a protease-sensitive factor(s) that dissociates from the complex after its formation. Here we provide evidence that the requirement for an ancillary factor assisting La binding to the pyrimidine tract of ribosomal protein mRNAs is typical of this RNA, and secondly that it may involve an RNA recognition motif of the La protein not clearly characterized previously. We also show that the Ro60 autoantigen is involved in the common factor activity necessary for the binding of La and CNBP proteins to their respective sequences. In addition, our findings suggest that an RNA also participates in this process. We show that CNBP can multimerise and that it binds to the 5'UTR as a dimer. Both La and CNBP compete for the interaction with the factor, and their binding to the 5'UTR is mutually exclusive. Our results from the binding analysis of mutations in the 5'UTR, which are known to disrupt the translational control in vivo, suggest a model in which the protein interactions and the 5'UTR RNA structure may co-operate in regulating the translational fate of ribosomal protein mRNAs.


Asunto(s)
Autoantígenos/química , Proteínas de Unión al ADN/metabolismo , ARN Mensajero/metabolismo , ARN Citoplasmático Pequeño , Ribonucleoproteínas/química , Proteínas Ribosómicas/biosíntesis , Proteínas de Xenopus , Secuencia de Aminoácidos , Animales , Sitios de Unión/genética , Proteínas Sanguíneas/inmunología , Dimerización , Humanos , Datos de Secuencia Molecular , Biosíntesis de Proteínas/genética , Pirimidinas/metabolismo , Proteínas de Unión al ARN/metabolismo , Alineación de Secuencia , Eliminación de Secuencia/genética , Xenopus laevis , Antígeno SS-B
15.
Water Res ; 75: 25-32, 2015 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-25746959

RESUMEN

Numerous studies have reported quantitative data on viruses in surface waters generated using different methodologies. In the current study, the impact of the use of either cell culture-based or molecular-based methods in quantitative microbial risk assessment was assessed. Previously and newly generated data on the presence of infectious human enteroviruses (HEV) and enterovirus and parechovirus RNA were used to estimate distributions of virus concentrations in surface waters. Because techniques for the detection of infectious human parechoviruses (HPeV) in surface waters were not available, a 'Parallelogram Approach' was used to estimate their concentrations based on the ratio infectious HEV/HEV RNA. The obtained virus concentrations were then used to estimate the probability of exposure for children during recreation in such virus contaminated surface waters. Human enterovirus cell culture/PCR ratios ranged from 2.3 × 10(-3) to 0.28. This broad range of ratios indicates that care should be taken in assuming a fixed ratio for assessing the risk with PCR based virus concentrations. The probabilities of exposure to both enteroviruses and parechoviruses were calculated, using our Parallelogram Approach for the calculation of infectious parechoviruses. For both viruses it was observed that the detection method significantly influenced the probability of exposure. Based on the calculated culture data, PCR data, and the ingestion volume, it was estimated that the mean probabilities of exposure, of recreating children, to surface water containing viruses were 0.087 (infectious enteroviruses), 0.71 (enterovirus particles), 0.28 (parechovirus particles) and 0.025 (calculated infectious parechoviruses) per recreation event. The mean probabilities of exposure of children recreating in surface water from which drinking water is produced to infectious enteroviruses were estimated for nine locations and varied between 1.5 × 10(-4) - 0.09 per recreation event. In this study, the use of the rotavirus dose response relationship as a surrogate was avoided. Instead, the probabilities of exposure were derived as a function of the distributions of the calculated doses. Our 'Parallelogram Approach' was used to estimate the unavailable infectious parechovirus concentrations using Monte Carlo simulations, and the exposure assessment carried out showed that virus concentrations present in surface waters could pose a health risk for children and other vulnerable populations.


Asunto(s)
Enterovirus/aislamiento & purificación , Monitoreo del Ambiente/métodos , Agua Dulce/virología , Parechovirus/aislamiento & purificación , Recreación , Niño , Exposición a Riesgos Ambientales , Humanos , Reacción en Cadena de la Polimerasa , Probabilidad , ARN Viral/análisis , Reacción en Cadena en Tiempo Real de la Polimerasa , Medición de Riesgo , Estaciones del Año , Natación
16.
J Food Prot ; 77(4): 640-2, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24680077

RESUMEN

Sporadic nontravel-related hepatitis E virus (HEV) infections have been reported in industrialized countries. These infections are caused by zoonotic HEV genotypes 3 and 4 that circulate in swine, wild boar, and deer. In The Netherlands, HEV RNA has been detected in >50% of the pig farms, and HEV-specific antibodies were detected in ∼70% of the slaughter pigs. In the current study, HEV seroprevalences were investigated in pigs raised on conventional, free-range, and organic farms in The Netherlands. Differences in seroprevalence may indicate different exposure routes or transmission dynamics within pig herds for HEV. In 2004, serum samples of 846 fattening pigs were obtained from farms that applied conventional (265 pigs at 24 farms), organic (417 pigs at 42 farms), and free-range (164 pigs at 12 farms) farming. HEV-specific antibodies were detected in samples from all conventional and free-range pig farms and in 41 of 42 organic pig farms, indicating that the probability of introducing HEV on a farm appeared to be equal for the different farming types. The estimated average within-herd seroprevalence was significantly higher for pigs raised on organic farms (89%) than for pigs raised on conventional farms (72%, P = 0.04) and nearly significant for pigs raised on free-range farms (76%, P = 0.06). Six of ten organic farms were estimated to have a withinherd seroprevalence of >95%, compared with 1 of 10 and 4 of 10 of the free-range and conventional pig farms, respectively. This suggests a higher force of infection with HEV for pigs reared on organic farms compared with pigs reared on conventional or free-range farms. This may be due to repetitive exposure to HEV caused by farming system-specific housing conditions, such as a greater contact frequency between pigs and more exposure to pig manure, increasing the transmission rate.


Asunto(s)
Crianza de Animales Domésticos/métodos , Anticuerpos Antivirales/sangre , Virus de la Hepatitis E/inmunología , Hepatitis E/veterinaria , Enfermedades de los Porcinos/epidemiología , Animales , Hepatitis E/epidemiología , Hepatitis E/transmisión , Hepatitis E/virología , Humanos , Estiércol/virología , Países Bajos/epidemiología , ARN Viral , Estudios Seroepidemiológicos , Porcinos , Enfermedades de los Porcinos/transmisión , Enfermedades de los Porcinos/virología , Zoonosis
17.
Food Environ Virol ; 4(4): 179-91, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23412890

RESUMEN

Numerous outbreaks have been attributed to the consumption of raw or minimally processed leafy green vegetables contaminated with enteric viral pathogens. The aim of the present study was an integrated virological monitoring of the salad vegetables supply chain in Europe, from production, processing and point-of-sale. Samples were collected and analysed in Greece, Serbia and Poland, from 'general' and 'ad hoc' sampling points, which were perceived as critical points for virus contamination. General sampling points were identified through the analysis of background information questionnaires based on HACCP audit principles, and they were sampled during each sampling occasion where as-ad hoc sampling points were identified during food safety fact-finding visits and samples were only collected during the fact-finding visits. Human (hAdV) and porcine (pAdV) adenovirus, hepatitis A (HAV) and E (HEV) virus, norovirus GI and GII (NoV) and bovine polyomavirus (bPyV) were detected by means of real-time (RT-) PCR-based protocols. General samples were positive for hAdV, pAdV, HAV, HEV, NoV GI, NoV GII and bPyV at 20.09 % (134/667), 5.53 % (13/235), 1.32 % (4/304), 3.42 % (5/146), 2 % (6/299), 2.95 % (8/271) and 0.82 % (2/245), respectively. Ad hoc samples were positive for hAdV, pAdV, bPyV and NoV GI at 9 % (3/33), 9 % (2/22), 4.54 % (1/22) and 7.14 % (1/14), respectively. These results demonstrate the existence of viral contamination routes from human and animal sources to the salad vegetable supply chain and more specifically indicate the potential for public health risks due to the virus contamination of leafy green vegetables at primary production.


Asunto(s)
Adenoviridae , Enfermedades del Sistema Digestivo/virología , Microbiología de Alimentos , Virus de Hepatitis , Norovirus , Poliomavirus , Verduras/virología , Animales , Bovinos , Abastecimiento de Alimentos , Grecia , Humanos , Hojas de la Planta , Polonia , Reacción en Cadena en Tiempo Real de la Polimerasa , Serbia , Porcinos
19.
J Virol Methods ; 168(1-2): 197-206, 2010 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-20510298

RESUMEN

To date, sources of hepatitis E virus (HEV) in the Netherlands, including swine and wild boar, have been identified, but no direct attribution to Dutch hepatitis E cases have been demonstrated. Other animal sources may exist. To identify these species, HEV RNA detection by RT-PCR is required, but complicated. A preselection based on serology may be useful. Therefore, wildlife species were studied by serology and molecular methods. Using a species-independent double-antigen sandwich ELISA, HEV-specific antibodies were detected in sera from 12% of 1029 wild boar (Sus scrofa scrofa), in 5% of 38 red deer (Cervus elaphus) and in none of 8 studied roe deer (Capreolus capreolus). Differences in background signals were observed between species and accounted for by fitting finite mixture distributions. HEV RNA was detected in 8% of 106 wild boars, in 15% of 39 red deer and in none of 8 roe deer. In conclusion, HEV was shown to be present in European red deer for the first time. This preselection based on species-independent serological assays may be beneficial to identify new potential animal reservoirs of HEV. The consumption of Dutch undercooked wild boar and red deer meat may lead to human exposure to HEV.


Asunto(s)
Anticuerpos Antihepatitis/sangre , Virus de la Hepatitis E/aislamiento & purificación , Hepatitis E/veterinaria , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa/métodos , Rumiantes/virología , Sus scrofa/virología , Virología/métodos , Animales , Análisis por Conglomerados , Ensayo de Inmunoadsorción Enzimática/métodos , Hepatitis E/diagnóstico , Hepatitis E/epidemiología , Virus de la Hepatitis E/clasificación , Virus de la Hepatitis E/genética , Virus de la Hepatitis E/inmunología , Datos de Secuencia Molecular , Países Bajos , Filogenia , ARN Viral/genética , Análisis de Secuencia de ADN , Estudios Seroepidemiológicos
20.
J Virol ; 69(6): 3744-51, 1995 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-7745722

RESUMEN

The defective interfering (DI) RNA MIDI of mouse hepatitis virus strain A59 (MHV-A59) contains a large open reading frame (ORF) spanning almost its entire genome. This ORF consists of sequences derived from ORF1a, ORF1b, and the nucleocapsid gene. We have previously demonstrated that mutations that disrupt the ORF decrease the fitness of MIDI and its derivatives (R. J. de Groot, R. G. van der Most, and W. J. M. Spaan, J. Virol. 66:5898-5905, 1992). To determine whether translation of the ORF per se is required or whether the encoded polypeptide or a specific sequence is involved, we analyzed sets of related DI RNAs containing different ORFs. After partial deletion of ORF1b and nucleocapsid gene sequences, disruption of the remaining ORF is still lethal; translation of the entire ORF is not essential, however. When a large fragment of the MHV-A59 spike gene, which is not present in any of the MHV-A59 DI RNAs identified so far, was inserted in-frame into a MIDI derivative, translation across this sequence was vital to DI RNA survival. Thus, the translated sequence is irrelevant, indicating that translation per se plays a crucial role in DI virus propagation. Next, it was examined during which step of the viral life cycle translation plays its role. Since the requirement for translation also exists in DI RNA-transfected and MHV-infected cells, it follows that either the synthesis or degradation of DI RNAs is affected by translation.


Asunto(s)
Virus Defectuosos/genética , Virus de la Hepatitis Murina/genética , Biosíntesis de Proteínas , ARN Viral/metabolismo , Secuencia de Bases , Línea Celular , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Transfección
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