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1.

Is it time to reassess variant annotation?

Samuels, David C; Yu, Hui; Guo, Yan.

Trends Genet; 38(6): 521-523, 2022 06.

Artículo en Inglés | MEDLINE | ID: mdl-35232614

2.

How T118M peripheral myelin protein 22 predisposes humans to Charcot-Marie-Tooth disease.

Stefanski, Katherine M; Li, Geoffrey C; Marinko, Justin T; Carter, Bruce D; Samuels, David C; Sanders, Charles R.

J Biol Chem; 299(2): 102839, 2023 02.

Artículo en Inglés | MEDLINE | ID: mdl-36581210

3.

Pharmacogenetics of weight gain following switch from efavirenz- to integrase inhibitor-containing regimens.

Wu, Kunling; Koethe, John; Hulgan, Todd; Brown, Todd; Bares, Sara H; Tassiopoulos, Katherine; Lake, Jordan E; Leonard, Michael; Samuels, David C; Erlandson, Kristine; Haas, David W.

Pharmacogenet Genomics; 34(2): 25-32, 2024 Feb 01.

Artículo en Inglés | MEDLINE | ID: mdl-37910437

4.

Alternative Applications of Genotyping Array Data Using Multivariant Methods.

Samuels, David C; Below, Jennifer E; Ness, Scott; Yu, Hui; Leng, Shuguang; Guo, Yan.

Trends Genet; 36(11): 857-867, 2020 11.

Artículo en Inglés | MEDLINE | ID: mdl-32773169

5.

Cancer-specific expression quantitative loci are affected by expression dysregulation.

Sheng, Quanhu; Samuels, David C; Yu, Hui; Ness, Scott; Zhao, Ying-Yong; Guo, Yan.

Brief Bioinform; 21(1): 338-347, 2020 Jan 17.

Artículo en Inglés | MEDLINE | ID: mdl-30475999

6.

EditPredict: Prediction of RNA editable sites with convolutional neural network.

Wang, Jiandong; Ness, Scott; Brown, Roger; Yu, Hui; Oyebamiji, Olufunmilola; Jiang, Limin; Sheng, Quanhu; Samuels, David C; Zhao, Ying-Yong; Tang, Jijun; Guo, Yan.

Genomics; 113(6): 3864-3871, 2021 11.

Artículo en Inglés | MEDLINE | ID: mdl-34562567

7.

Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats.

Yu, Hui; Zhao, Shilin; Ness, Scott; Kang, Huining; Sheng, Quanhu; Samuels, David C; Oyebamiji, Olufunmilola; Zhao, Ying-Yong; Guo, Yan.

PLoS Comput Biol; 16(6): e1007968, 2020 06.

Artículo en Inglés | MEDLINE | ID: mdl-32511223

8.

Strategies for processing and quality control of Illumina genotyping arrays.

Zhao, Shilin; Jing, Wang; Samuels, David C; Sheng, Quanghu; Shyr, Yu; Guo, Yan.

Brief Bioinform; 19(5): 765-775, 2018 09 28.

Artículo en Inglés | MEDLINE | ID: mdl-28334151

9.

Power and sample size calculations for high-throughput sequencing-based experiments.

Li, Chung-I; Samuels, David C; Zhao, Ying-Yong; Shyr, Yu; Guo, Yan.

Brief Bioinform; 19(6): 1247-1255, 2018 11 27.

Artículo en Inglés | MEDLINE | ID: mdl-28605403

10.

Quality and concordance of genotyping array data of 12,064 samples from 5840 cancer patients.

Guo, Mingsheng; Yue, Wei; Samuels, David C; Yu, Hui; He, Jing; Zhao, Ying-Yong; Guo, Yan.

Genomics; 111(4): 950-957, 2019 07.

Artículo en Inglés | MEDLINE | ID: mdl-29902512

11.

Reply to Record et al. "The role of PMP22 T118M in Charcot-Marie-Tooth disease remains unsolved".

Stefanski, Katherine M; Li, Geoffrey C; Marinko, Justin T; Carter, Bruce D; Samuels, David C; Sanders, Charles R.

J Biol Chem; 299(10): 105181, 2023 10.

Artículo en Inglés | MEDLINE | ID: mdl-37716137

12.

Architectures and accuracy of artificial neural network for disease classification from omics data.

Yu, Hui; Samuels, David C; Zhao, Ying-Yong; Guo, Yan.

BMC Genomics; 20(1): 167, 2019 Mar 04.

Artículo en Inglés | MEDLINE | ID: mdl-30832569

13.

Mitochondrial DNA Haplogroups and Delirium During Sepsis.

Samuels, David C; Hulgan, Todd; Fessel, Joshua P; Billings, Frederic T; Thompson, Jennifer L; Chandrasekhar, Rameela; Girard, Timothy D.

Crit Care Med; 47(8): 1065-1071, 2019 08.

Artículo en Inglés | MEDLINE | ID: mdl-31306254

14.

OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans.

Sierra, Beatriz; Triska, Petr; Soares, Pedro; Garcia, Gissel; Perez, Ana B; Aguirre, Eglys; Oliveira, Marisa; Cavadas, Bruno; Regnault, Béatrice; Alvarez, Mayling; Ruiz, Didye; Samuels, David C; Sakuntabhai, Anavaj; Pereira, Luisa; Guzman, Maria G.

PLoS Pathog; 13(2): e1006220, 2017 02.

Artículo en Inglés | MEDLINE | ID: mdl-28241052

15.

The Role of Mitochondrial DNA Variation in Age-Related Decline in Gait Speed Among Older Men Living With Human Immunodeficiency Virus.

Sun, Jing; Brown, Todd T; Samuels, David C; Hulgan, Todd; D'Souza, Gypsyamber; Jamieson, Beth D; Erlandson, Kristine M; Martinson, Jeremy; Palella, Frank J; Margolick, Joseph B; Kirk, Gregory D; Schrack, Jennifer A.

Clin Infect Dis; 67(5): 778-784, 2018 08 16.

Artículo en Inglés | MEDLINE | ID: mdl-29481608

16.

Mitochondrial DNA sequence characteristics modulate the size of the genetic bottleneck.

Wilson, Ian J; Carling, Phillipa J; Alston, Charlotte L; Floros, Vasileios I; Pyle, Angela; Hudson, Gavin; Sallevelt, Suzanne C E H; Lamperti, Costanza; Carelli, Valerio; Bindoff, Laurence A; Samuels, David C; Wonnapinij, Passorn; Zeviani, Massimo; Taylor, Robert W; Smeets, Hubert J M; Horvath, Rita; Chinnery, Patrick F.

Hum Mol Genet; 25(5): 1031-41, 2016 Mar 01.

Artículo en Inglés | MEDLINE | ID: mdl-26740552

17.

Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequencing data.

Zhang, Pan; Samuels, David C; Lehmann, Brian; Stricker, Thomas; Pietenpol, Jennifer; Shyr, Yu; Guo, Yan.

Brief Bioinform; 17(2): 224-32, 2016 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-26249222

18.

StrandScript: evaluation of Illumina genotyping array design and strand correction.

Wang, Jing; Samuels, David C; Shyr, Yu; Guo, Yan.

Bioinformatics; 33(15): 2399-2401, 2017 Aug 01.

Artículo en Inglés | MEDLINE | ID: mdl-28402386

19.

Mutation-specific effects in germline transmission of pathogenic mtDNA variants.

Otten, Auke B C; Sallevelt, Suzanne C E H; Carling, Phillippa J; Dreesen, Joseph C F M; Drüsedau, Marion; Spierts, Sabine; Paulussen, Aimee D C; de Die-Smulders, Christine E M; Herbert, Mary; Chinnery, Patrick F; Samuels, David C; Lindsey, Patrick; Smeets, Hubert J M.

Hum Reprod; 33(7): 1331-1341, 2018 07 01.

Artículo en Inglés | MEDLINE | ID: mdl-29850888

20.

Tri-allelic heteroplasmies, DNA-RNA differences and their polynucleotide tract associations in the mitochondrial genome.

Zhao, Shilin; Samuels, David C; Zhao, Ying-Yong; Guo, Yan.

Genomics; 2017 Sep 29.

Artículo en Inglés | MEDLINE | ID: mdl-28970049

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