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1.
Occurrence and classification of T-shaped interactions between nucleobases in RNA structures.
RNA;
29(8): 1215-1229, 2023 08.
Artículo
en Inglés
| MEDLINE | ID: mdl-37188492
2.
Structural Properties of Hachimoji Nucleic Acids and Their Building Blocks: Comparison of Genetic Systems with Four, Six and Eight Alphabets.
Chemphyschem;
24(5): e202200714, 2023 03 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-36315394
3.
3D Porous MoS2-Decorated Reduced Graphene Oxide Aerogel as a Heterogeneous Catalyst for Reductive Transformation Reactions.
Langmuir;
39(36): 12865-12877, 2023 Sep 12.
Artículo
en Inglés
| MEDLINE | ID: mdl-37639338
4.
Structural and Energetic Features of Base-Base Stacking Contacts in RNA.
J Chem Inf Model;
63(2): 655-669, 2023 01 23.
Artículo
en Inglés
| MEDLINE | ID: mdl-36635230
5.
Novel Vanillin-based hybrids inhibit quorum sensing and silences phenotypical expressions in Pseudomonas aeruginosa.
Drug Dev Res;
84(1): 45-61, 2023 02.
Artículo
en Inglés
| MEDLINE | ID: mdl-36419404
6.
Exploring the Nature of Hydrogen Bonding between RNA and Proteins: A Comprehensive Analysis of RNA : Protein Complexes.
Chemphyschem;
23(2): e202100731, 2022 01 19.
Artículo
en Inglés
| MEDLINE | ID: mdl-34747094
7.
Guanidinium-amino acid hydrogen-bonding interactions in protein crystal structures: implications for guanidinium-induced protein denaturation.
Phys Chem Chem Phys;
25(1): 857-869, 2022 Dec 21.
Artículo
en Inglés
| MEDLINE | ID: mdl-36512335
8.
Pairing interactions between nucleobases and ligands in aptamer:ligand complexes of riboswitches: crystal structure analysis, classification, optimal structures, and accurate interaction energies.
RNA;
25(10): 1274-1290, 2019 10.
Artículo
en Inglés
| MEDLINE | ID: mdl-31315914
9.
Influence of the Number, Nature and Position of Methyl Posttranscriptional Modifications on Nucleobase Stacking in RNA.
Chemphyschem;
22(15): 1622-1630, 2021 08 04.
Artículo
en Inglés
| MEDLINE | ID: mdl-34101319
10.
Molecular Dynamics Simulations of the Aptamer Domain of Guanidinium Ion Binding Riboswitch ykkC-III: Structural Insights into the Discrimination of Cognate and Alternate Ligands.
J Chem Inf Model;
61(10): 5243-5255, 2021 10 25.
Artículo
en Inglés
| MEDLINE | ID: mdl-34609872
11.
Role of Stacking Interactions in the Stability of Primitive Genetics: A Quantum Chemical View.
J Chem Inf Model;
61(9): 4321-4330, 2021 09 27.
Artículo
en Inglés
| MEDLINE | ID: mdl-34491053
12.
On the Nature of Nucleobase Stacking in RNA: A Comprehensive Survey of Its Structural Variability and a Systematic Classification of Associated Interactions.
J Chem Inf Model;
61(3): 1470-1480, 2021 03 22.
Artículo
en Inglés
| MEDLINE | ID: mdl-33570947
13.
Replication of the Aristolochic Acid I Adenine Adduct (ALI-N6-A) by a Model Translesion Synthesis DNA Polymerase: Structural Insights on the Induction of Transversion Mutations from Molecular Dynamics Simulations.
Chem Res Toxicol;
33(10): 2573-2583, 2020 10 19.
Artículo
en Inglés
| MEDLINE | ID: mdl-32975111
14.
Can modified DNA base pairs with chalcogen bonding expand the genetic alphabet? A combined quantum chemical and molecular dynamics simulation study.
Phys Chem Chem Phys;
22(41): 23754-23765, 2020 Nov 07.
Artículo
en Inglés
| MEDLINE | ID: mdl-33063082
15.
Structural landscape of base pairs containing post-transcriptional modifications in RNA.
RNA;
23(6): 847-859, 2017 06.
Artículo
en Inglés
| MEDLINE | ID: mdl-28341704
16.
Can Cyanuric Acid and 2,4,6-Triaminopyrimidine Containing Ribonucleosides be Components of Prebiotic RNA? Insights from QM Calculations and MD Simulations.
Chemphyschem;
20(11): 1425-1436, 2019 06 04.
Artículo
en Inglés
| MEDLINE | ID: mdl-30997731
17.
Molecular Dynamics Simulations of Mismatched DNA Duplexes Associated with the Major C8-Linked 2'-Deoxyguanosine Adduct of the Food Mutagen Ochratoxin A: Influence of Opposing Base, Adduct Ionization State, and Sequence on the Structure of Damaged DNA.
Chem Res Toxicol;
31(8): 712-720, 2018 08 20.
Artículo
en Inglés
| MEDLINE | ID: mdl-29924599
18.
Effect of Size and Shape of Nitrogen-Containing Aromatics on Conformational Preferences of DNA Containing Damaged Guanine.
J Chem Inf Model;
58(7): 1415-1425, 2018 07 23.
Artículo
en Inglés
| MEDLINE | ID: mdl-29923712
19.
Molecular Modeling of the Major DNA Adduct Formed from Food Mutagen Ochratoxin A in NarI Two-Base Deletion Duplexes: Impact of Sequence Context and Adduct Ionization on Conformational Preference and Mutagenicity.
Chem Res Toxicol;
30(8): 1582-1591, 2017 08 21.
Artículo
en Inglés
| MEDLINE | ID: mdl-28719194
20.
Structural and electronic properties of barbituric acid and melamine-containing ribonucleosides as plausible components of prebiotic RNA: implications for prebiotic self-assembly.
Phys Chem Chem Phys;
19(45): 30762-30771, 2017 Nov 22.
Artículo
en Inglés
| MEDLINE | ID: mdl-29165453