RESUMEN
DNA barcoding using mitochondrial cytochrome c oxidase subunit I (COI) is regarded as a standard method for species identification. Recent reports have also shown extended applications of COI gene analysis in phylogeny and molecular diversity studies. The bee-eaters are a group of near passerine birds in the family Meropidae. There are 26 species worldwide; five of them are found in Saudi Arabia. Until now, GenBank included a COI barcode for only one species of bee-eater, the European bee-eater (Merops apiaster). We sequenced the 694-bp segment of the COI gene of the green bee-eater M. orientalis and compared the sequences with those of M. apiaster. Pairwise sequence comparison showed 66 variable sites across all the eight sequences from both species, with an interspecific genetic distance of 0.0362. Two and one within-species variable sites were found, with genetic distances of 0.0005 and 0.0003 for M. apiaster and M. orientalis, respectively. This is the first study reporting barcodes for M. orientalis.
Asunto(s)
Aves/genética , Código de Barras del ADN Taxonómico , Complejo IV de Transporte de Electrones/genética , Animales , Secuencia de Bases , ADN Mitocondrial/química , Complejo IV de Transporte de Electrones/metabolismo , Evolución Molecular , Variación Genética , Mitocondrias/enzimología , Mitocondrias/metabolismo , Datos de Secuencia Molecular , Filogenia , Subunidades de Proteína/genética , Subunidades de Proteína/metabolismo , Arabia Saudita , Alineación de Secuencia , Análisis de Secuencia de ADN , Especificidad de la EspecieRESUMEN
In recent years, DNA barcoding has emerged as a powerful tool for species identification. We report an extended validation of a universal DNA mini-barcode for amplification of 130-bp COI segments from 23 specimens collected from a desert environment, including 11 reptiles, five mammals and seven birds. Besides the standard double-annealing protocol, we also tested a more stringent single-annealing protocol. The PCR success rate for the amplification of the mini-barcode region was: mammals (4/5), reptiles (5/11) and birds (4/7). These findings demonstrate the limited utility of universal primers for mini-barcoding, at least for these vertebrate taxa that we collected from the Saudi Arabian desert.
Asunto(s)
Aves/genética , Código de Barras del ADN Taxonómico/métodos , Cartilla de ADN/metabolismo , ADN/genética , Mamíferos/genética , Reacción en Cadena de la Polimerasa/métodos , Reptiles/genética , Animales , Clima Desértico , Electroforesis en Gel de Agar , Especificidad de la EspecieRESUMEN
The use of highly discriminatory methods for the identification and characterization of genotypes is essential for plant protection and appropriate use. We utilized the RAPD method for the genetic fingerprinting of 11 plant species of desert origin (seven with known medicinal value). Andrachne telephioides, Zilla spinosa, Caylusea hexagyna, Achillea fragrantissima, Lycium shawii, Moricandia sinaica, Rumex vesicarius, Bassia eriophora, Zygophyllum propinquum subsp migahidii, Withania somnifera, and Sonchus oleraceus were collected from various areas of Saudi Arabia. The five primers used were able to amplify the DNA from all the plant species. The amplified products of the RAPD profiles ranged from 307 to 1772 bp. A total of 164 bands were observed for 11 plant species, using five primers. The number of well-defined and major bands for a single plant species for a single primer ranged from 1 to 10. The highest pair-wise similarities (0.32) were observed between A. fragrantissima and L. shawii, when five primers were combined. The lowest similarities (0) were observed between A. telephioides and Z. spinosa; Z. spinosa and B. eriophora; B. eriophora and Z. propinquum. In conclusion, the RAPD method successfully discriminates among all the plant species, therefore providing an easy and rapid tool for identification, conservation and sustainable use of these plants.
Asunto(s)
Plantas Medicinales/genética , Técnica del ADN Polimorfo Amplificado Aleatorio , Secuencia de Bases , Cartilla de ADN , ADN de Plantas/genética , Plantas Medicinales/clasificación , Reacción en Cadena de la PolimerasaRESUMEN
Microsatellite markers are commonly used for examining population structure, especially inbreeding, outbreeding and gene flow. An array of microsatellite loci, preferably with multiallelic presentation, is preferable for ensuring accurate results. However, artifact peaks or stutters in the electrophoretograms significantly hamper the reliable interpretation of genotypes. We interpreted electrophoretograms of seven microsatellite loci to determine the genetic diversity of the Arabian Oryx. All the alleles of different loci exhibited good peak resolutions and hence were clearly identified. Moreover, none of the stutter peaks impaired the recognition or differentiation between homozygote and heterozygote. Our findings suggest that correct identification of alleles in the presence of co-amplified nonspecific fragments is important for reliable interpretation of microsatellite data.
Asunto(s)
Antílopes/genética , Sitios Genéticos/genética , Variación Genética/genética , Repeticiones de Microsatélite/genética , Alelos , Animales , Emparejamiento Base/genética , Electroforesis en Gel de Agar/instrumentación , Arabia SauditaRESUMEN
The present study aimed to identify the tapeworms that parasitize the rock dove Columba livia palastinae and domestic chicken Gallus gallus domesticus in Taif governorate, Saudi Arabia. A total of 115 rock doves and 105 domestic chicken have been examined. Birds were brought in from the wells and farms inside and outside the city of Taif. In rock doves, the percentage of infection was recorded as Cotugnia digonopora 5.21%, Hymenolepis carioca 10.43%, Raillietina echinobothrida 27.82%, Raillietina tetragona 22.6%. The prevalence of infection recorded in Municipal chicken with different types of tapeworms was Cotugnia digonopora 7.61%, Choanotaenia infundibulum 12.38%, Amoebotaenia sphenoides 7.61%, Raillietina echinobothrida 11.42%, Raillietina tetragona 8.57%, Raillietina (Paroniella) kashiwarensis 4.76%. The overall percentage of infected rock pigeons Columba livia palastinae with tapeworms was 66.1% while the percentage of infected chicken Gallus gallus domestica was 52.3%. The study defined and described this species as classification keys in place.