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1.
Am J Med Genet A ; 194(8): e63609, 2024 08.
Artículo en Inglés | MEDLINE | ID: mdl-38532509

RESUMEN

Mental illnesses are one of the biggest contributors to the global disease burden. Despite the increased recognition, diagnosis and ongoing research of mental health disorders, the etiology and underlying molecular mechanisms of these disorders are yet to be fully elucidated. Moreover, despite many treatment options available, a large subset of the psychiatric patient population is nonresponsive to standard medications and therapies. There has not been a comprehensive study to date examining the burden and impact of treatable genetic disorders (TGDs) that can present with neuropsychiatric features in psychiatric patient populations. In this study, we test the hypothesis that TGDs that present with psychiatric symptoms are more prevalent within psychiatric patient populations compared to the general population by performing targeted next-generation sequencing of 129 genes associated with 108 TGDs in a cohort of 2301 psychiatric patients. In total, 48 putative affected and 180 putative carriers for TGDs were identified, with known or likely pathogenic variants in 79 genes. Despite screening for only 108 genetic disorders, this study showed a two-fold (2.09%) enrichment for genetic disorders within the psychiatric population relative to the estimated 1% cumulative prevalence of all single gene disorders globally. This strongly suggests that the prevalence of these, and most likely all, genetic diseases is greatly underestimated in psychiatric populations. Increasing awareness and ensuring accurate diagnosis of TGDs will open new avenues to targeted treatment for a subset of psychiatric patients.


Asunto(s)
Secuenciación de Nucleótidos de Alto Rendimiento , Trastornos Mentales , Humanos , Trastornos Mentales/genética , Trastornos Mentales/epidemiología , Trastornos Mentales/terapia , Femenino , Masculino , Adulto , Persona de Mediana Edad , Predisposición Genética a la Enfermedad , Enfermedades Genéticas Congénitas/genética , Enfermedades Genéticas Congénitas/epidemiología , Enfermedades Genéticas Congénitas/diagnóstico , Enfermedades Genéticas Congénitas/terapia , Prevalencia , Pruebas Genéticas
2.
J Med Genet ; 58(4): 275-283, 2021 04.
Artículo en Inglés | MEDLINE | ID: mdl-32581083

RESUMEN

BACKGROUND: Exome and genome sequencing have been demonstrated to increase diagnostic yield in paediatric populations, improving treatment options and providing risk information for relatives. There are limited studies examining the clinical utility of these tests in adults, who currently have limited access to this technology. METHODS: Patients from adult and cancer genetics clinics across Toronto, Ontario, Canada were recruited into a prospective cohort study evaluating the diagnostic utility of exome and genome sequencing in adults. Eligible patients were ≥18 years of age and suspected of having a hereditary disorder but had received previous uninformative genetic test results. In total, we examined the diagnostic utility of exome and genome sequencing in 47 probands and 34 of their relatives who consented to participate and underwent exome or genome sequencing. RESULTS: Overall, 17% (8/47) of probands had a pathogenic or likely pathogenic variant identified in a gene associated with their primary indication for testing. The diagnostic yield for patients with a cancer history was similar to the yield for patients with a non-cancer history (4/18 (22%) vs 4/29 (14%)). An additional 24 probands (51%) had an inconclusive result. Secondary findings were identified in 10 patients (21%); three had medically actionable results. CONCLUSIONS: This study lends evidence to the diagnostic utility of exome or genome sequencing in an undiagnosed adult population. The significant increase in diagnostic yield warrants the use of this technology. The identification and communication of secondary findings may provide added value when using this testing modality as a first-line test.


Asunto(s)
Secuenciación del Exoma , Predisposición Genética a la Enfermedad , Enfermedades no Diagnosticadas/diagnóstico , Secuenciación Completa del Genoma , Adolescente , Adulto , Anciano , Canadá/epidemiología , Exoma/genética , Femenino , Pruebas Genéticas/tendencias , Genoma Humano/genética , Humanos , Masculino , Persona de Mediana Edad , Mutación/genética , Enfermedades no Diagnosticadas/epidemiología , Enfermedades no Diagnosticadas/genética , Adulto Joven
3.
Am J Med Genet A ; 182(3): 484-492, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31840928

RESUMEN

The new 2017 diagnostic criteria for hypermobile Ehlers-Danlos Syndrome (hEDS) provide a framework for diagnosing hEDS but are more stringent than the previous Villefranche criteria. Our clinical experience at the GoodHope EDS clinic was that the 2017 criteria left many highly symptomatic patients without a diagnosis of hEDS. We conducted a retrospective cohort study to confirm our clinic experience and assess the accuracy of the 2017 diagnostic criteria for hEDS in patients who had a previous hEDS diagnosis based on the Villefranche criteria. Our study found that 15% (n = 20 of 131) of patients with a prior diagnosis of hEDS met the 2017 diagnostic criteria, and many of the traits used to distinguish hEDS were not significantly more frequent in patients who met 2017 criteria versus those who did not. In both groups objective systemic manifestations were found less frequently than subjective systemic manifestations. Beighton score (BS) as assessed by primary care practitioner was found to be higher than assessment by EDS practitioner in 81% (n = 74 of 91) of cases. Generalized joint hypermobility was confirmed in only 46% (n = 51 of 111) of patients who had a previous diagnosis of hEDS. Higher BS did not correlate with increased number of systemic manifestations in our cohort. Common comorbidities of hEDS were found with similar frequency in those who met 2017 criteria and those who did not. Based on our cohort, the 2017 hEDS diagnostic criteria require refinement to improve its diagnostic accuracy.


Asunto(s)
Síndrome de Ehlers-Danlos/diagnóstico , Síndrome de Ehlers-Danlos/genética , Inestabilidad de la Articulación/diagnóstico , Inestabilidad de la Articulación/genética , Adolescente , Adulto , Estudios de Cohortes , Síndrome de Ehlers-Danlos/epidemiología , Síndrome de Ehlers-Danlos/fisiopatología , Femenino , Humanos , Inestabilidad de la Articulación/epidemiología , Inestabilidad de la Articulación/fisiopatología , Masculino , Persona de Mediana Edad , Estudios Retrospectivos , Adulto Joven
4.
Can J Psychiatry ; 65(12): 865-873, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-32495635

RESUMEN

OBJECTIVE: There is a paucity of literature on genetic diagnosis in psychiatric populations, particularly the vulnerable population of patients with concomitant neurodevelopmental disorder (NDD). In this cross-sectional study, we investigated the genetic diagnostic rate in 151 adult psychiatric patients from two centers in Ontario, Canada, including a large subset (73.5%) with concurrent NDD, and performed phenotypic analysis to determine the strongest predictors for the presence of a genetic diagnosis. METHOD: Patients 16 years of age or older and affected with a psychiatric disorder plus at least one of NDD, neurological disorder, congenital anomaly, dysmorphic features, or family history of NDD were recruited through the genetics clinics between 2012 and 2016. Patients underwent genetic assessment and testing according to clinical standards. Chi-squared test was used for phenotypic comparisons. Multivariate logistic regression analysis was performed to determine which phenotypic features were predictive of genetic diagnosis types. RESULTS: Overall, 45.7% of patients in the total cohort were diagnosed with genetic disorders with the vast majority of diagnoses (89.9%) comprising single gene and chromosomal disorders. There were management and treatment implications for almost two-thirds (63.8%) of diagnosed patients. Presence of a single gene disorder or chromosomal diagnosis was predicted by differing combinations of neurological, NDD, and psychiatric phenotypes. CONCLUSION: The results of this study highlight the frequency and impact of genetic diagnosis in psychiatric populations, particularly those with concomitant NDD. Genetic assessment should be considered in psychiatric patients, particularly those with multiple brain phenotypes (psychiatric, neurodevelopmental, neurological).


Asunto(s)
Trastornos Mentales , Trastornos del Neurodesarrollo , Adulto , Estudios Transversales , Diagnóstico Dual (Psiquiatría) , Femenino , Predisposición Genética a la Enfermedad/genética , Humanos , Masculino , Persona de Mediana Edad , Trastornos del Neurodesarrollo/diagnóstico , Trastornos del Neurodesarrollo/genética , Ontario , Fenotipo
5.
J Nerv Ment Dis ; 207(3): 145-151, 2019 03.
Artículo en Inglés | MEDLINE | ID: mdl-30720598

RESUMEN

Olfactory reference syndrome (ORS) is a rarely diagnosed psychiatric disorder in which individuals falsely believe that they emit an offensive body odor. This retrospective cohort study characterizes the clinical and demographic features of 54 individuals who presented to a Canadian genetics clinic for query trimethylaminuria (TMAU), an inherited disorder in which a pungent fishy odor is produced. The majority (83%) were found to have a likely diagnosis of ORS and a high rate (73.3%) of concomitant psychiatric disorders; only two patients were diagnosed with TMAU. This study highlights the genetics clinic as an unexpected and major ascertainment point for ORS, and shows that ORS can be differentiated from TMAU by age of onset (~28 years), odor characterization (refuse-related), and the presence of associated comorbid psychiatric diagnoses. There is a low diagnostic rate of ORS, attesting to the need for improved education and awareness.


Asunto(s)
Deluciones/fisiopatología , Trastorno Obsesivo Compulsivo/fisiopatología , Percepción Olfatoria/fisiología , Adulto , Trastornos de Ansiedad/epidemiología , Comorbilidad , Deluciones/diagnóstico , Deluciones/epidemiología , Femenino , Pruebas Genéticas , Humanos , Masculino , Errores Innatos del Metabolismo/diagnóstico , Metilaminas/orina , Persona de Mediana Edad , Trastornos del Humor/epidemiología , Trastorno Obsesivo Compulsivo/diagnóstico , Trastorno Obsesivo Compulsivo/epidemiología , Estudios Retrospectivos , Trastornos Somatomorfos/epidemiología , Adulto Joven
6.
Am J Med Genet B Neuropsychiatr Genet ; 180(1): 46-54, 2019 01.
Artículo en Inglés | MEDLINE | ID: mdl-30556376

RESUMEN

Many genetic conditions can mimic mental health disorders, with psychiatric symptoms that are difficult to treat with standard psychotropic medications. This study tests the hypothesis that psychiatric populations are enriched for pathogenic variants associated with selected inborn errors of metabolism (IEMs). Using next-generation sequencing, 2046 psychiatric patients were screened for pathogenic variants in genes associated with four IEMs, Niemann-Pick disease type C (NPC), Wilson disease (WD), homocystinuria (HOM), and acute intermittent porphyria (AIP). Among the 2046 cases, carrier rates of 0.83, 0.98, and 0.20%, for NPC, WD and HOM, and affected rates of 0.10 and 0.24% for NPC and AIP were seen, respectively. An enrichment of known and predicted pathogenic variants in the genes associated with NPC and AIP was found in the psychiatric cohort and especially in schizophrenia patients. The results of this study support that pathogenic variants in genes associated with IEMs are enriched in psychiatric populations. Underlying undiagnosed IEMs could account for the psychiatric symptomatology in a subset of psychiatric patients. Further studies are warranted to investigate the possibility that carriers for IEMs may have an increased risk for psychiatric disorders, particularly in the context of poor treatment response.


Asunto(s)
Trastornos Mentales/genética , Trastornos Mentales/metabolismo , Errores Innatos del Metabolismo/genética , Adulto , Trastorno Bipolar/genética , Trastorno Bipolar/metabolismo , Estudios de Cohortes , Trastorno Depresivo Mayor/genética , Trastorno Depresivo Mayor/metabolismo , Femenino , Variación Genética/genética , Degeneración Hepatolenticular/genética , Secuenciación de Nucleótidos de Alto Rendimiento/métodos , Homocistinuria/genética , Humanos , Masculino , Trastornos Mentales/fisiopatología , Errores Innatos del Metabolismo/complicaciones , Errores Innatos del Metabolismo/metabolismo , Persona de Mediana Edad , Enfermedad de Niemann-Pick Tipo C/genética , Porfiria Intermitente Aguda/genética , Esquizofrenia/genética , Esquizofrenia/metabolismo
8.
J Med Genet ; 53(8): 523-32, 2016 08.
Artículo en Inglés | MEDLINE | ID: mdl-27075013

RESUMEN

BACKGROUND: AUTS2 syndrome is an 'intellectual disability (ID) syndrome' caused by genomic rearrangements, deletions, intragenic duplications or mutations disrupting AUTS2. So far, 50 patients with AUTS2 syndrome have been described, but clinical data are limited and almost all cases involved young children. METHODS: We present a detailed clinical description of 13 patients (including six adults) with AUTS2 syndrome who have a pathogenic mutation or deletion in AUTS2. All patients were systematically evaluated by the same clinical geneticist. RESULTS: All patients have borderline to severe ID/developmental delay, 83-100% have microcephaly and feeding difficulties. Congenital malformations are rare, but mild heart defects, contractures and genital malformations do occur. There are no major health issues in the adults; the oldest of whom is now 59 years of age. Behaviour is marked by it is a friendly outgoing social interaction. Specific features of autism (like obsessive behaviour) are seen frequently (83%), but classical autism was not diagnosed in any. A mild clinical phenotype is associated with a small in-frame 5' deletions, which are often inherited. Deletions and other mutations causing haploinsufficiency of the full-length AUTS2 transcript give a more severe phenotype and occur de novo. CONCLUSIONS: The 13 patients with AUTS2 syndrome with unique pathogenic deletions scattered around the AUTS2 locus confirm a phenotype-genotype correlation. Despite individual variations, AUTS2 syndrome emerges as a specific ID syndrome with microcephaly, feeding difficulties, dysmorphic features and a specific behavioural phenotype.


Asunto(s)
Discapacidad Intelectual/genética , Trastornos Mentales/genética , Proteínas/genética , Adulto , Niño , Preescolar , Proteínas del Citoesqueleto , Exones/genética , Femenino , Estudios de Asociación Genética/métodos , Haploinsuficiencia/genética , Humanos , Lactante , Masculino , Microcefalia/genética , Persona de Mediana Edad , Mutación/genética , Fenotipo , Eliminación de Secuencia/genética , Síndrome , Factores de Transcripción , Adulto Joven
9.
Hum Mol Genet ; 23(10): 2752-68, 2014 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-24381304

RESUMEN

Rare copy number variants (CNVs) disrupting ASTN2 or both ASTN2 and TRIM32 have been reported at 9q33.1 by genome-wide studies in a few individuals with neurodevelopmental disorders (NDDs). The vertebrate-specific astrotactins, ASTN2 and its paralog ASTN1, have key roles in glial-guided neuronal migration during brain development. To determine the prevalence of astrotactin mutations and delineate their associated phenotypic spectrum, we screened ASTN2/TRIM32 and ASTN1 (1q25.2) for exonic CNVs in clinical microarray data from 89 985 individuals across 10 sites, including 64 114 NDD subjects. In this clinical dataset, we identified 46 deletions and 12 duplications affecting ASTN2. Deletions of ASTN1 were much rarer. Deletions near the 3' terminus of ASTN2, which would disrupt all transcript isoforms (a subset of these deletions also included TRIM32), were significantly enriched in the NDD subjects (P = 0.002) compared with 44 085 population-based controls. Frequent phenotypes observed in individuals with such deletions include autism spectrum disorder (ASD), attention deficit hyperactivity disorder (ADHD), speech delay, anxiety and obsessive compulsive disorder (OCD). The 3'-terminal ASTN2 deletions were significantly enriched compared with controls in males with NDDs, but not in females. Upon quantifying ASTN2 human brain RNA, we observed shorter isoforms expressed from an alternative transcription start site of recent evolutionary origin near the 3' end. Spatiotemporal expression profiling in the human brain revealed consistently high ASTN1 expression while ASTN2 expression peaked in the early embryonic neocortex and postnatal cerebellar cortex. Our findings shed new light on the role of the astrotactins in psychopathology and their interplay in human neurodevelopment.


Asunto(s)
Trastorno por Déficit de Atención con Hiperactividad/genética , Trastornos Generalizados del Desarrollo Infantil/genética , Glicoproteínas/genética , Proteínas del Tejido Nervioso/genética , Factores de Transcripción/genética , Adolescente , Adulto , Estudios de Casos y Controles , Niño , Preescolar , Cromosomas Humanos Par 9 , Variaciones en el Número de Copia de ADN , Exones , Femenino , Expresión Génica , Estudios de Asociación Genética , Predisposición Genética a la Enfermedad , Glicoproteínas/metabolismo , Humanos , Lactante , Recién Nacido , Masculino , Proteínas del Tejido Nervioso/metabolismo , Especificidad de Órganos , Fenotipo , Polimorfismo de Nucleótido Simple , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Receptores de Superficie Celular/genética , Receptores de Superficie Celular/metabolismo , Factores de Riesgo , Eliminación de Secuencia , Factores de Transcripción/metabolismo , Sitio de Iniciación de la Transcripción , Proteínas de Motivos Tripartitos , Ubiquitina-Proteína Ligasas , Adulto Joven
10.
Hum Genet ; 135(8): 841-50, 2016 08.
Artículo en Inglés | MEDLINE | ID: mdl-27142213

RESUMEN

Christianson syndrome (OMIM 300243), caused by mutations in the X-linked SLC9A6 gene, is characterized by severe global developmental delay and intellectual disability, developmental regression, epilepsy, microcephaly and impaired ocular movements. It shares many common features with Angelman syndrome. Carrier females have been described as having learning difficulties with mild to moderate intellectual disability, behavioural issues and psychiatric illnesses. There is little literature on the carrier female phenotype of Christianson syndrome. We describe a large extended family with three affected males, four carrier females, one presumed carrier female and one obligate carrier female with a c.190G>T, p.E64X mutation known to cause a premature stop codon in SLC9A6. We characterize and expand the clinical phenotype of female SLC9A6 mutation carriers by comparing our described family with female carriers previously discussed in the literature. In particular, we highlight the neurodevelopmental and psychiatric phenotypes observed in our family and previous reports.


Asunto(s)
Síndrome de Angelman/genética , Ataxia/genética , Epilepsia/genética , Enfermedades Genéticas Ligadas al Cromosoma X/genética , Discapacidad Intelectual/genética , Microcefalia/genética , Trastornos de la Motilidad Ocular/genética , Intercambiadores de Sodio-Hidrógeno/genética , Síndrome de Angelman/fisiopatología , Ataxia/fisiopatología , Codón sin Sentido/genética , Epilepsia/fisiopatología , Femenino , Enfermedades Genéticas Ligadas al Cromosoma X/fisiopatología , Heterocigoto , Humanos , Discapacidad Intelectual/fisiopatología , Discapacidades para el Aprendizaje/genética , Discapacidades para el Aprendizaje/fisiopatología , Masculino , Microcefalia/fisiopatología , Mutación , Trastornos de la Motilidad Ocular/fisiopatología , Linaje
11.
J Hum Genet ; 61(10): 867-872, 2016 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-27305979

RESUMEN

We have used single-nucleotide polymorphism microarray genotyping and homozygosity-by-descent (HBD) mapping followed by Sanger sequencing or whole-exome sequencing (WES) to identify causative mutations in three consanguineous families with intellectual disability (ID) related to thyroid dyshormonogenesis (TDH). One family was found to have a shared HBD region of 12.1 Mb on 8q24.21-q24.23 containing 36 coding genes, including the thyroglobulin gene, TG. Sanger sequencing of TG identified a homozygous nonsense mutation Arg2336*, which segregated with the phenotype in the family. A second family showed several HBD regions, including 6.0 Mb on 2p25.3-p25.2. WES identified a homozygous nonsense mutation, Glu596*, in the thyroid peroxidase gene, TPO. WES of a mother/father/proband trio from a third family revealed a homozygous missense mutation, Arg412His, in TPO. Mutations in TG and TPO are very rarely associated with ID, mainly because TDH is generally detectable and treatable. However, in populations where resources for screening and detection are limited, and especially where consanguineous marriages are common, mutations in genes involved in thyroid function may also be causes of ID, and as TPO and TG mutations are the most common genetic causes of TDH, these are also likely to be relatively common causes of ID.


Asunto(s)
Hipotiroidismo Congénito/diagnóstico , Hipotiroidismo Congénito/genética , Discapacidad Intelectual/diagnóstico , Discapacidad Intelectual/genética , Yoduro Peroxidasa/genética , Mutación , Tiroglobulina/genética , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Niño , Preescolar , Consanguinidad , Análisis Mutacional de ADN , Femenino , Genes Recesivos , Estudios de Asociación Genética , Genotipo , Humanos , Lactante , Masculino , Linaje
12.
Rheumatol Int ; 36(3): 341-8, 2016 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-26433894

RESUMEN

Ehlers-Danlos syndromes (EDS) are a heterogeneous group of hereditary connective tissue disorders characterized by joint hypermobility, widespread musculoskeletal pain and tissue fragility. Psychiatric disorders and psychosocial impairment are common, yet poorly characterized, findings in EDS patients. We investigated the frequency and types of psychiatric disorders and their relationship to systemic manifestations in a cohort of 106 classic and hypermobility type EDS patients. In this retrospective study, extensive medical chart review was performed for patients referred at two genetics clinics who were diagnosed with EDS. Statistical analysis was undertaken to determine the frequency of psychiatric disorders and association with systemic findings. Psychiatric disorders were found in 42.5% of the EDS cohort, with 22.7% of patients affected with 2 or more psychiatric diagnoses. Anxiety and depression were most commonly reported, with frequencies of 23.6 and 25.5%, respectively. A variety of other psychiatric diagnoses were also identified. Abdominal pain [odds ratio (OR) 7.38], neuropathic pain (OR 4.07), migraines (OR 5.21), joint pain (OR 2.85) and fatigue (OR 5.55) were significantly associated with the presence of a psychiatric disorder. The presence of any pain symptom was significantly associated with having a psychiatric disorder (OR 9.68). Muscle pain (OR 2.79), abdominal pain (OR 5.78), neuropathic pain (OR 3.91), migraines (OR 2.63) and fatigue (OR 3.78) were significantly associated with having an anxiety or mood disorder. Joint hypermobility and the classic dermatological features of EDS showed no significant association with having a psychiatric disorder. Our findings demonstrate a high frequency of psychiatric disorders and an association with pain symptoms in EDS.


Asunto(s)
Dolor Abdominal/epidemiología , Artralgia/epidemiología , Síndrome de Ehlers-Danlos/epidemiología , Trastornos Mentales/epidemiología , Trastornos Migrañosos/epidemiología , Neuralgia/epidemiología , Dolor Abdominal/diagnóstico , Dolor Abdominal/psicología , Adulto , Artralgia/diagnóstico , Artralgia/psicología , Comorbilidad , Síndrome de Ehlers-Danlos/diagnóstico , Síndrome de Ehlers-Danlos/psicología , Femenino , Humanos , Masculino , Trastornos Mentales/diagnóstico , Trastornos Mentales/psicología , Persona de Mediana Edad , Trastornos Migrañosos/diagnóstico , Trastornos Migrañosos/psicología , Neuralgia/diagnóstico , Neuralgia/psicología , Oportunidad Relativa , Ontario/epidemiología , Dimensión del Dolor , Escalas de Valoración Psiquiátrica , Estudios Retrospectivos , Factores de Riesgo , Adulto Joven
13.
Hum Mutat ; 36(4): 454-62, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25655089

RESUMEN

Cornelia de Lange syndrome (CdLS) is characterized by facial dysmorphism, growth failure, intellectual disability, limb malformations, and multiple organ involvement. Mutations in five genes, encoding subunits of the cohesin complex (SMC1A, SMC3, RAD21) and its regulators (NIPBL, HDAC8), account for at least 70% of patients with CdLS or CdLS-like phenotypes. To date, only the clinical features from a single CdLS patient with SMC3 mutation has been published. Here, we report the efforts of an international research and clinical collaboration to provide clinical comparison of 16 patients with CdLS-like features caused by mutations in SMC3. Modeling of the mutation effects on protein structure suggests a dominant-negative effect on the multimeric cohesin complex. When compared with typical CdLS, many SMC3-associated phenotypes are also characterized by postnatal microcephaly but with a less distinctive craniofacial appearance, a milder prenatal growth retardation that worsens in childhood, few congenital heart defects, and an absence of limb deficiencies. While most mutations are unique, two unrelated affected individuals shared the same mutation but presented with different phenotypes. This work confirms that de novo SMC3 mutations account for ∼ 1%-2% of CdLS-like phenotypes.


Asunto(s)
Proteínas de Ciclo Celular/genética , Proteoglicanos Tipo Condroitín Sulfato/genética , Proteínas Cromosómicas no Histona/genética , Síndrome de Cornelia de Lange/diagnóstico , Síndrome de Cornelia de Lange/genética , Heterocigoto , Mutación , Fenotipo , Alelos , Estudios de Cohortes , Análisis Mutacional de ADN , Exoma , Facies , Femenino , Genotipo , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Masculino
14.
Genet Med ; 17(2): 149-57, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25077648

RESUMEN

PURPOSE: Recurrent 15q13.3 deletions are enriched in multiple neurodevelopmental conditions including intellectual disability, autism, epilepsy, and schizophrenia. However, the 15q13.3 microdeletion syndrome remains ill-defined. METHODS: We systematically compiled all cases of 15q13.3 deletion published before 2014. We also examined three locally available cohorts to identify new adults with 15q13.3 deletions. RESULTS: We identified a total of 246 cases (133 children, 113 adults) with deletions overlapping or within the 15q13.3 (breakpoint (BP)4-BP5) region, including seven novel adult cases from local cohorts. No BP4-BP5 deletions were identified in 23,838 adult controls. Where known, 15q13.3 deletions were typically inherited (85.4%) and disproportionately of maternal origin (P < 0.0001). Overall, 198 cases (121 children, 77 adults; 80.5%) had at least one neuropsychiatric diagnosis. Accounting for ascertainment, developmental disability/intellectual disability was present in 57.7%, epilepsy/seizures in 28.0%, speech problems in 15.9%, autism spectrum disorder in 10.9%, schizophrenia in 10.2%, mood disorder in 10.2%, and attention deficit hyperactivity disorder in 6.5%. By contrast, major congenital malformations, including congenital heart disease (2.4%), were uncommon. Placenta previa occurred in the pregnancies of four cases. CONCLUSION: The 15q13.3 microdeletion syndrome is predominantly characterized by neuropsychiatric expression. There are implications for pre- and postnatal detection, genetic counseling, and anticipatory care.


Asunto(s)
Trastornos de los Cromosomas/diagnóstico , Trastornos de los Cromosomas/etiología , Discapacidad Intelectual/diagnóstico , Discapacidad Intelectual/etiología , Fenotipo , Convulsiones/diagnóstico , Convulsiones/etiología , Adulto , Anciano , Puntos de Rotura del Cromosoma , Deleción Cromosómica , Trastornos de los Cromosomas/epidemiología , Cromosomas Humanos Par 15 , Estudios de Cohortes , Femenino , Estudios de Asociación Genética , Homocigoto , Humanos , Patrón de Herencia , Discapacidad Intelectual/epidemiología , Masculino , Persona de Mediana Edad , Linaje , Placenta Previa , Embarazo , Prevalencia , Convulsiones/epidemiología
15.
BMC Med Genet ; 16: 41, 2015 Jun 25.
Artículo en Inglés | MEDLINE | ID: mdl-26104215

RESUMEN

BACKGROUND: Cohen Syndrome (COH1) is a rare autosomal recessive disorder, principally identified by ocular, neural and muscular deficits. We identified three large consanguineous Pakistani families with intellectual disability and in some cases with autistic traits. METHODS: Clinical assessments were performed in order to allow comparison of clinical features with other VPS13B mutations. Homozygosity mapping followed by whole exome sequencing and Sanger sequencing strategies were used to identify disease-related mutations. RESULTS: We identified two novel homozygous deletion mutations in VPS13B, firstly a 1 bp deletion, NM_017890.4:c.6879delT; p.Phe2293Leufs*24, and secondly a deletion of exons 37-40, which co-segregate with affected status. In addition to COH1-related traits, autistic features were reported in a number of family members, contrasting with the "friendly" demeanour often associated with COH1. The c.6879delT mutation is present in two families from different regions of the country, but both from the Baloch sub-ethnic group, and with a shared haplotype, indicating a founder effect among the Baloch population. CONCLUSION: We suspect that the c.6879delT mutation may be a common cause of COH1 and similar phenotypes among the Baloch population. Additionally, most of the individuals with the c.6879delT mutation in these two families also present with autistic like traits, and suggests that this variant may lead to a distinct autistic-like COH1 subgroup.


Asunto(s)
Anomalías Múltiples/genética , Trastorno Autístico/patología , Dedos/anomalías , Discapacidad Intelectual/genética , Discapacidad Intelectual/patología , Microcefalia/genética , Microcefalia/patología , Hipotonía Muscular/genética , Hipotonía Muscular/patología , Miopía/genética , Miopía/patología , Obesidad/genética , Obesidad/patología , Fenotipo , Eliminación de Secuencia/genética , Proteínas de Transporte Vesicular/genética , Trastorno Autístico/genética , Secuencia de Bases , Discapacidades del Desarrollo/clasificación , Discapacidades del Desarrollo/etnología , Discapacidades del Desarrollo/genética , Discapacidades del Desarrollo/patología , Femenino , Dedos/patología , Genes Recesivos , Genotipo , Haplotipos/genética , Homocigoto , Humanos , Discapacidad Intelectual/clasificación , Discapacidad Intelectual/etnología , Masculino , Microcefalia/clasificación , Microcefalia/etnología , Datos de Secuencia Molecular , Hipotonía Muscular/clasificación , Hipotonía Muscular/etnología , Miopía/clasificación , Miopía/etnología , Obesidad/clasificación , Obesidad/etnología , Pakistán , Linaje , Degeneración Retiniana , Análisis de Secuencia de ADN
16.
Am J Med Genet A ; 167A(2): 403-6, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25425531

RESUMEN

Ocular anomalies have been frequently reported in Noonan syndrome. Anterior segment anomalies have been described in 57% of PTPN11 positive patients, with the most common findings being corneal changes and in particular, prominent corneal nerves and cataracts. We report on a neonate with a confirmed PTPN11 mutation and ocular findings consistent with Axenfeld anomaly. The patient initially presented with non-immune hydrops and subsequently developed hypertrophic cardiomyopathy and dysmorphic features typical of Noonan syndrome. While a pathogenic mutation in PTPN11 was confirmed, prior testing for the two common genes associated with Axenfeld-Rieger syndrome, PITX2, and FOXC1 was negative. This finding expands the spectrum of anterior chamber anomalies seen in Noonan syndrome and perhaps suggests a common neural crest related mechanism that plays a critical role in the development of the eye and other organs.


Asunto(s)
Anomalías del Ojo/patología , Síndrome de Noonan/diagnóstico , Síndrome de Noonan/genética , Fenotipo , Segmento Anterior del Ojo/anomalías , Niño , Anomalías del Ojo/diagnóstico , Anomalías del Ojo/genética , Enfermedades Hereditarias del Ojo , Femenino , Glaucoma/congénito , Humanos , Mutación , Proteína Tirosina Fosfatasa no Receptora Tipo 11/genética
17.
Am J Med Genet A ; 167A(9): 2098-102, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25946043

RESUMEN

Microdeletion of the BP1-BP2 region at 15q11.2 is a recurrent copy number variant (CNV) frequently found in patients undergoing chromosomal microarray (CMA). Genetic counselling regarding this CNV is challenging due to the wide range of phenotypic presentation in reported patients and lack of general population-based data. As one of the most common reasons for CMA is childhood developmental delay, clinicians need to be cognizant of the inherent ascertainment bias in the literature. We performed a detailed medical record review for 55 patients with this 15q11.2 microdeletion and report the clinical features of the 35 patients for whom information was available. We compared our results to the recent report by Cafferkey et al. in this journal. Our conclusion is that the phenotypic spectrum is too broad and non-specific to constitute a bona fide "syndrome" and that further research must be done to delineate the contribution of this CNV to phenotype.


Asunto(s)
Cromosomas Humanos Par 15/genética , Discapacidades del Desarrollo/genética , Adolescente , Adulto , Niño , Preescolar , Deleción Cromosómica , Variaciones en el Número de Copia de ADN/genética , Femenino , Humanos , Lactante , Recién Nacido , Masculino , Fenotipo , Síndrome , Adulto Joven
18.
Hum Genet ; 133(8): 975-84, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24623383

RESUMEN

In this study, we have performed autozygosity mapping on a large consanguineous Pakistani family segregating with intellectual disability. We identified two large regions of homozygosity-by-descent (HBD) on 16q12.2-q21 and 16q24.1-q24.3. Whole exome sequencing (WES) was performed on an affected individual from the family, but initially, no obvious mutation was detected. However, three genes within the HBD regions that were not fully captured during the WES were Sanger sequenced and we identified a five base pair deletion (actually six base pairs deleted plus one base pair inserted) in exon 7 of the gene FBXO31. The variant segregated completely in the family, in recessive fashion giving a LOD score of 3.95. This variant leads to a frameshift and a premature stop codon and truncation of the FBXO31 protein, p.(Cys283Asnfs*81). Quantification of mRNA and protein expression suggests that nonsense-mediated mRNA decay also contributes to the loss of FBXO31 protein in affected individuals. FBXO31 functions as a centrosomal E3 ubiquitin ligase, in association with SKP1 and Cullin-1, involved in ubiquitination of proteins targeted for degradation. The FBXO31/SKP1/Cullin1 complex is important for neuronal morphogenesis and axonal identity. FBXO31 also plays a role in dendrite growth and neuronal migration in developing cerebellar cortex. Our finding adds further evidence of the involvement of disruption of the protein ubiquitination pathway in intellectual disability.


Asunto(s)
Cromosomas Humanos Par 16/genética , Proteínas F-Box/genética , Genes Recesivos , Discapacidad Intelectual/genética , Eliminación de Secuencia , Proteínas Supresoras de Tumor/genética , Western Blotting , Mapeo Cromosómico , Consanguinidad , Femenino , Mutación del Sistema de Lectura/genética , Homocigoto , Humanos , Técnicas para Inmunoenzimas , Discapacidad Intelectual/patología , Masculino , Pakistán , Linaje , ARN Mensajero/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
19.
Am J Med Genet A ; 164A(2): 511-5, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24311471

RESUMEN

Jacobsen syndrome (JS) is a disorder of developmental delay, growth retardation, thrombocytopenia, dysmorphic features, and cardiac abnormalities, among other congenital anomalies. JS is caused by contiguous gene deletion in distal chromosome 11q, generally varying in size from 7 to 20 Mb. Periventricular nodular heterotopia (PVNH) is a neuronal migration disorder in which neurons are abnormally located in nodules along the edges of the lateral ventricles. PVNH can also be seen with other congenital anomalies, including a recurrent association with distal limb defects. Transverse limb defects have previously been reported in two patients with JS. We report on a patient with a 3.162 Mb interstitial deletion at chromosome region 11q24 overlapping the region commonly affected in JS. The patient had PVNH and a transverse limb reduction defect, with minimal typical findings of JS. This is the first report of PVNH associated with a microdeletion at chromosome 11q and may represent an expansion of the phenotypic spectrum associated with JS. This is the third report of transverse limb reduction defects in association with JS, supporting a widening of the skeletal phenotypic spectrum in JS to include more severe limb anomalies. ETS1 is proposed as a candidate gene for involvement in limb anomalies in JS.


Asunto(s)
Síndrome de Deleción Distal 11q de Jacobsen/genética , Deformidades Congénitas de las Extremidades/genética , Heterotopia Nodular Periventricular/genética , Anciano , Encéfalo/patología , Hibridación Genómica Comparativa , Facies , Femenino , Humanos , Síndrome de Deleción Distal 11q de Jacobsen/diagnóstico , Deformidades Congénitas de las Extremidades/diagnóstico , Imagen por Resonancia Magnética , Heterotopia Nodular Periventricular/diagnóstico , Fenotipo
20.
Hum Mutat ; 34(8): 1057-65, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23636887

RESUMEN

We have developed PhenoTips: open source software for collecting and analyzing phenotypic information for patients with genetic disorders. Our software combines an easy-to-use interface, compatible with any device that runs a Web browser, with a standardized database back end. The PhenoTips' user interface closely mirrors clinician workflows so as to facilitate the recording of observations made during the patient encounter. Collected data include demographics, medical history, family history, physical and laboratory measurements, physical findings, and additional notes. Phenotypic information is represented using the Human Phenotype Ontology; however, the complexity of the ontology is hidden behind a user interface, which combines simple selection of common phenotypes with error-tolerant, predictive search of the entire ontology. PhenoTips supports accurate diagnosis by analyzing the entered data, then suggesting additional clinical investigations and providing Online Mendelian Inheritance in Man (OMIM) links to likely disorders. By collecting, classifying, and analyzing phenotypic information during the patient encounter, PhenoTips allows for streamlining of clinic workflow, efficient data entry, improved diagnosis, standardization of collected patient phenotypes, and sharing of anonymized patient phenotype data for the study of rare disorders. Our source code and a demo version of PhenoTips are available at http://phenotips.org.


Asunto(s)
Bases de Datos Genéticas , Enfermedades Genéticas Congénitas/diagnóstico , Enfermedades Genéticas Congénitas/genética , Investigación Genética , Fenotipo , Programas Informáticos , Interfaz Usuario-Computador , Algoritmos , Niño , Sistemas de Administración de Bases de Datos , Bases de Datos Factuales , Ontología de Genes , Humanos , Almacenamiento y Recuperación de la Información
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