Ruthenium(IV)-catalyzed isomerization of the C=C bond of o-allylic substrates: a theoretical and experimental study.

A general mechanism to rationalize Ru(IV) -catalyzed isomerization of the C=C bond in O-allylic substrates is proposed. Calculations supporting the proposed mechanism were performed at the MPWB1K/6-311+G(d,p)+SDD level of theory. All experimental observations in different solvents (water and THF) and under different pH conditions (neutral and basic) can be interpreted in terms of the new mechanism. Theoretical analysis of the transformation from precatalyst to catalyst led to structural identification of the active species in different media. The experimentally observed induction period is related to the magnitudes of the energy barriers computed for that process. The theoretical energy profile for the catalytic cycle requires application of relatively high temperatures, as is experimentally observed. Participation of a water molecule in the reaction coordinate is mechanistically essential when the reaction is carried out in aqueous medium. The new mechanistic proposal helped to develop a new experimental procedure for isomerization of allyl ethers to 1-propenyl ethers under neutral aqueous conditions. This process is an unique example of efficient and selective catalytic isomerization of allyl ethers in aqueous medium.

BCl3-mediated ene reaction of sulfur dioxide and unfunctionalized alkenes.

The first ene reactions of SO(2) and unfunctionalized alkenes are reported. Calculations suggest that the endergonic ene reactions of SO(2) with alkenes can be used to generate beta,gamma-unsaturated sulfinyl and sulfonyl compounds. Indeed, in the presence of one equivalent of BCl(3), the unstable sulfinic acid form stable sulfinic acid.BCl(3) complexes that can be reacted in situ with NCS to generate corresponding sulfonyl chlorides, or with a base to generate corresponding sulfinates. The latter can be reacted with electrophiles to generate sulfones, or with silyl chloride to form beta,gamma-unsaturated silyl sulfinates. The sulfinic acid.BCl(3) complexes can be reacted with ethers that act as oxygen nucleophiles to produce corresponding sulfinic esters. Thus one-pot, three-component synthesis of beta,gamma-unsaturated sulfonamides, sulfinyl esters and sulfones have been developed starting from alkenes and sulfur dioxide (reagent and solvent).

Canonical variational transition-state theory study of the CF3CHFCH2F + OH reaction.

Variational transition-state theory rate constants with multidimensional tunneling contributions using the small curvature method have been calculated for the CF(3)CHFCH(2)F (HFC-245eb) + OH reaction over a temperature range from 200 to 800 K. The mPW1B95-41.0 hybrid functional, parametrized by Albu and Swaminathan to generate theoretical rate constants nearly identical to the experimental values for the CH(3)F + OH reaction, has been used in conjunction with the 6-31+G(d,p) basis set to explore the potential energy surface of the title reaction. The functional provides results within the limits of chemical accuracy, supporting the conclusions about transferability of a previous study on the CF(3)CH(2)CH(3) + OH reaction. Fourteen different reaction channels have been explored, all of them with significant contributions to the global rate constants.

Gas-phase reaction between calcium monocation and fluoromethane: Analysis of the potential energy hypersurface and kinetics calculations.

The gas-phase reaction between calcium monocation and fluoromethane: Ca(+)+CH(3)F-->CaF(+)+CH(3) was theoretically analyzed. The potential energy hypersurface was explored by using density functional theory methodology with different functionals and Pople's, Dunning's, Ahlrichs', and Stuttgart-Dresden basis sets. Kinetics calculations (energy and total angular momentum resolved microcanonical variational/conventional theory) were accomplished. The theoretically predicted range for the global kinetic rate constant values at 295 K (7.2x10(-11)-5.9x10(-10) cm(3) molecule(-1) s(-1)) agrees reasonably well with the experimental value at the same temperature [(2.6+/-0.8)x10(-10) cm(3) molecule(-1) s(-1)]. Explicit consideration of a two transition state model, where the formation of a weakly bounded prereactive complex is preceded by an outer transition state (entrance channel) and followed by an inner transition state connecting with a second intermediate that finally leads to products, is mandatory. Experimental observations on the correlation, or lack of correlation, between reaction rate constants and second ionization energies of the metal might well be rationalized in terms of this two transition state model.

Canonical variational transition-state theory study of the CF3CH2CH3 + OH reaction.

Variational transition-state theory rate constants with multidimensional tunneling contributions using the small curvature method have been calculated for the CF3CH2CH3 (HFC-263fb) + OH reaction over a temperature range from 200 to 373 K. The mPW1B95-41.0 hybrid functional, parametrized by Albu and Swaminathan to generate theoretical rate constants nearly identical to the experimental values for the CH3F + OH reaction, has been used in conjunction with the 6-31+G** basis set to explore the potential energy surface of the title reaction. The good agreement found between theoretical predictions and the experimental data available suggests that the present approach is an excellent option to obtain high-quality results at low computational cost for direct dynamics studies of hydrogen abstraction reactions from complex hydrofluorocarbons. The reliability of the structure activity relationship used to estimate rate constant values for OH reactions with hydrofluorocarbons is also discussed in detail.

Valence orbital response to pseudorotation of tetrahydrofuran: a snapshot using dual space analysis.

The pseudorotation of tetrahydrofuran (THF) (C(4)H(8)O) has been studied using density functional theory, with respect to the valence orbital responses to the ionization potentials and to orbital electron and momentum distributions. Three conformations of THF, the global minimum structure C(s), local minimum structure C(2), and a transition state structure C(1), which are characteristic configurations on the potential energy surface, are examined using the SAOP/et-pVQZ//B3LYP/6-311++G** models with the aforementioned dual space analysis. It is noted in the ionization energy spectra that the minimum structures C(s) and C(2) are not directly connected by pseudorotation, but through the transition state structure C(1). As a result, some orbitals of the C(s) conformer are able to "correlate" to orbitals of the C(2) conformer without a strict symmetry constraint, i.e., orbital 7a' of the C(s) conformer is correlated to orbital 5b of the C(2) conformer. It is also noted that although the valence orbital ionization potentials are not significantly altered by the pseudorotation of THF, their spectra (mainly due to excitation) are quite different indeed. Detailed orbital analysis based on dual space analysis is given. The valence orbital behavior of the conformations is orbital dependent. It can be approximately divided into three groups: the "signature group" is associated with orbitals experiencing significant changes. The frontier orbitals are in this group. The "nearly identical group" includes orbitals without apparent changes across the conformations. Most of the orbitals showing a certain degree of distortion during the pseudorotation process belong to the third group. The present study demonstrates that a comprehensive understanding of the pseudorotation of THF and its dynamics requires multidimensional information and that the information gained from momentum space is complementary to that from the more familiar coordinate space.

A suitable model for emeraldine salt.

A new mechanism for the formation of doped polyaniline is presented. Besides providing suitable structural and spectroscopic parameters, the new mechanism allows for the rationalization of the experimentally observed equilibrium between polaron and bipolaron defects in emeraldine salt. The magnetic behavior and the "metallic island" model for conduction in doped polyaniline are also theoretically supported by the new proposal.

Bis(allyl)-ruthenium(IV) complexes as highly efficient catalysts for the redox isomerization of allylic alcohols into carbonyl compounds in organic and aqueous media: scope, limitations, and theoretical analysis of the mechanism.

The catalytic activity of the bis(allyl)-ruthenium(IV) dimer [[Ru(eta(3):eta(3)-C(10)H(16))(mu-Cl)Cl](2)] (C(10)H(16) = 2,7-dimethylocta-2,6-diene-1,8-diyl) (1), and that of its mononuclear derivatives [Ru(eta(3):eta(3)-C(10)H(16))Cl(2)(L)] (L = CO, PR(3), CNR, NCR) (2) and [Ru(eta(3):eta(3)-C(10)H(16))Cl(NCMe)(2)][SbF(6)] (3), in the redox isomerization of allylic alcohols into carbonyl compounds, both in tetrahydrofuran and in water, is reported. In particular, a variety of allylic alcohols have been quantitatively isomerized using [[Ru(eta(3):eta(3)-C(10)H(16))(mu-Cl)Cl](2)] (1) as catalyst, the reactions proceeding in all cases faster in water. Remarkably, complex 1 has been found to be the most efficient catalyst reported to date for this particular transformation, leading to TOF and TON values up to 62,500 h(-1) and 1 500,000, respectively. Moreover, catalyst 1 can be recycled and is capable of performing allylic alcohol isomerizations even in the presence of conjugated dienes, which are known to be strong poisons in isomerization catalysis. On the basis of both experimental data and theoretical calculations (DFT), a complete catalytic cycle for the isomerization of 2-propen-1-ol into propenal is described. The potential energy surfaces of the cycle have been explored at the B3LYP/6-311 + G(d,p)//B3LYP/6-31G(d,p) + LAN2DZ level. The proposed mechanism involves the coordination of the oxygen atom of the allylic alcohol to the metal. The DFT energy profile is consistent with the experimental observation that the reaction only proceeds under heating. Calculations predict the catalytic cycle to be strongly exergonic, in full agreement with the high yields experimentally observed.

Pseudorotation motion in tetrahydrofuran: an ab initio study.

The use of different models based on experimental information about the observed level splitings, rotational constants, and far-infrared transition frequencies leads to different predictions on the equilibrium geometry for tetrahydrofuran. High-level ab initio calculations [coupled cluster singles, doubles (triples)/complete basis set (second order Moller-Plesset triple, quadrupole, quintuple)+zero-point energy(anharmonic)] suggest that the equilibrium conformation of tetrahydrofuran is an envelope C(s) structure. The theoretical geometrical parameters might be helpful to plan further microwave spectroscopic studies in order to get a physical interpretation of the measurements.

Doping of polyaniline by acid-base chemistry: density functional calculations with periodic boundary conditions.

Calculations with Gaussian orbitals and periodic boundary conditions using several density functionals are carried out to study the proton-doping of polyaniline. We explore previously proposed mechanisms to explain the spectacular increase of the electrical conductivity of polyaniline upon protonation. The structural and spectroscopic theoretical predictions for both polaron and bipolaron lattices agree quite well with the experimental data, and we find that the bipolaron structure is lower in energy.

Lattice defects and magnetic ordering in plutonium oxides: a hybrid density-functional-theory study of strongly correlated materials.

Experimental studies of actinide oxides are challenging, and conventional electronic structure calculations fail to qualitatively reproduce the scarce data. We employ a new generation of hybrid density functionals to model a defective plutonium dioxide lattice. The procedure is first tested against stoichiometric bulk PuO2 and Pu2O3, for which predictions agree well with experiment where known. The interstitial oxygen in PuO2.25 is found to be singly charged, consistent with experimental observations and contrary to the O2- previously proposed theoretically.

Computational study of the reaction of N(2D) atoms with CH2F radicals: an example of a barrier-free reaction involving very high internal energies.

The singlet potential-energy surface for the N(2D)+CH2F(2A') reaction has been studied employing both second-order Møller-Plesset and density-functional theories. The energies of the involved species have been refined using the Gaussian-2, complete basis set, and coupled-cluster singles and doubles (triples) methods. The reaction proceeds through the formation of an initial intermediate, which does not involve any activation barrier. Based on the energy profile for the singlet potential-energy surface, the preferred product should be the most exothermic one, namely, HCN+HF, followed by HNC+HF and FCN+H2. This result seems in contradiction with a computational study of the kinetics of the title reaction in terms of the statistical theories, which leads to the prediction that the production of HNC+HF should be the dominant channel. Consequently, a limited molecular-dynamics study has been carried out, concluding that in fact the system behaves in a nonstatistical way. According to the molecular-dynamics study, the most exothermic channel, HCN+HF, should be the dominant one. An analysis of the possible role of the singlet surface in the reaction of N(4S) with CH2F(2A') has also been carried out. The computational study shows that the microcanonical coefficients for the nonadiabatic channels are much smaller than the competing adiabatic ones. Therefore, the reaction of N(4S) with CH2F(2A') should proceed on the triplet surface without spin change.

A computational study of the reaction of ground-state nitrogen atoms with chloromethyl radicals.

A computational study of the N(4S) + CH2Cl reaction has been carried out. The first step of the reaction is the formation of an initial intermediate (NCH2Cl), which is relatively stable and does not involve any energy barrier. The two most exothermic products are those resulting from the release of a chlorine atom, H2C=N + Cl and trans-HC=NH + Cl. A kinetic study within the framework of the statistical theories suggests that the kinetically preferred product is also the most exothermic one. This is in contrast with the analogue reaction of nitrogen atoms with CH2F, where the preferred product from both thermodynamic and kinetic points of view is HFCN + H. Therefore, reactions of nitrogen atoms with chloromethyl radicals release chlorine atoms as major products. The rate coefficient for the title reaction is estimated to be about 3.09 x 10(-13) cm3 s(-1) molecule(-1) at 300 K, a value four times smaller than the rate coefficient for its fluorine analogue.

Theoretical approach to the mechanism of reactions between halogen atoms and unsaturated hydrocarbons: the Cl + propene reaction.

The potential energy surface for the Cl + propene reaction was analyzed at the MP2 level using Pople's 6-31G(d,p) and 6-311+G(d,p), and Dunning's cc-pVDZ and aug-cc-pVDZ basis sets. Two different channels for the addition reaction leading to chloroalkyl radicals and five alternative channels for the abstraction reaction leading to C(3)H(5) (.) + HCl were explored. The corresponding energy profiles were computed at the QCISD(T)/aug-cc-pVDZ//MP2/aug-cc-pVDZ level of theory. Theoretical results suggest that the previously established mechanism consisting of (1) direct abstraction and (2) addition-elimination steps is instead made up of (1) addition through an intermediate and (2) two-step abstraction processes. No direct abstraction mechanism exists on the potential energy surface. The kinetic equations derived for the new mechanism are consistent with the pressure dependence experimentally observed for this reaction.

Unusual intramolecular [2 + 2] cycloaddition of allyl and vinylidene C=C bonds under mild conditions: a theoretical analysis.

A theoretical analysis allows for the rationalization of the recently reported unusual formation under mild conditions of a cyclobutylidene ring from a diastereoselective [2 + 2] intramolecular cycloaddition of two C=C systems. The reaction takes place by heating in dichloromethane the vinylidene complexes [Ru((eta(5),eta(3)-C(9)H(7))[=C=C(R)H][kappa(1)-(P)-PPh(2)(C(3)H(5))](PPh(3))][BF(4)] (R = Ph, p-Me-C(6)H(4)) (1) yielding the bicyclic alkylidene complexes [Ru((eta(5),eta(3)-C(9)H(7))[kappa(2)-(P,C)-(=CC(R)HCH(2)CHCH(2)-PPh(2)](PPh(3))][BF(4)] (2). The proposed mechanism represents an alternative to the classical Woodward-Hoffmann's supra-antara approach.

The hetero-Diels-Alder addition of sulfur dioxide: the pseudo-chair conformation of a 4,5-dialkylsultine.

Even unsubstituted butadiene adds to sulfur dioxide in the hetero-Diels-Alder mode more rapidly than in the chelotropic mode. The sultine can be observed in equilibrium with the diene and the sulfur dioxide only at low temperature and in the presence of CF(3)COOH. Crystals of 4,5-dialkyl-sultine resulting from the SO(2) addition to 1,2-dimethylidenecyclohexane have been obtained at -100 degrees C and analyzed by X-ray diffraction. Quantum chemical calculations have shown that hyperconjugative interactions within the sulfinyl moiety are responsible for the anomeric effects observed in sultines that prefer pseudo-chair conformations with pseudo-axial Sdbond;O bonds.

Ab initio and experimental studies on the hetero-Diels-Alder and cheletropic additions of sulfur dioxide to (E)-1-methoxybutadiene: a mechanism involving three molecules of SO(2).

Kinetics on the cheletropic addition of sulfur dioxide to (E)-1-methoxybutadiene (1) to give the corresponding sulfolene 2 (2-methoxy-2,5-dihydrothiophene-1,1-dioxide) gave the rate law d[2]/dt = k[1][SO(2)](x)() with x = 2.6 +/- 0.2 at 198 K. Under these conditions, no sultine 3 [(2RS,6RS)-6-methoxy-3,6-dihydro-1,2-oxathiin-2-oxide] resulting from a hetero-Diels-Alder addition was observed, and the cheletropic elimination 2 --> 1 + SO(2) did not occur. Ab initio and DFT quantum calculations confirmed that the cheletropic addition 1 + SO(2) --> 2 follows two parallel mechanisms, one involving two molecules of SO(2) and the transition structure with DeltaG(++) = 18.2 +/- 0.2 kcal/mol at 198 K (exptl); 22.5-22.7 kcal/mol [B3LYP/6-31G(d,p)], the other one involving three molecules of SO(2) with DeltaG(++) = 18.9 +/- 0.1 kcal/mol at 198 K (exptl); 19.7 kcal/mol [B3LYP/6-31G(d,p)]. The mechanism involving only one molecule of SO(2) in the transition structure requires a higher activation energy, DeltaG(++) = 25.2 kcal/mol [B3LYP/6-31G(d,p)]. Comparison of the geometries and energetics of the structures involved into the 1 + SO(2) --> 2, 3 and 1 + 2SO(2) --> 2, 3 + SO(2) reactions obtained by ab initio and DFT methods suggest that the latter calculation techniques can be used to study the cycloadditions of sulfur dioxide. The calculations predict that the hetero-Diels-Alder addition 1 + SO(2) --> 3 also prefers a mechanism in which three molecules of SO(2) are involved in the cycloaddition transition structure. At 198 K and in SO(2) solutions, the entropy cost (TDeltaS(++)) is overcompensated by the specific solvation by SO(2) in the transition structures of both the cheletropic and hetero-Diels-Alder reactions of (E)-1-methoxybutadiene with SO(2).

The hetero-Diels-Alder addition of sulfur dioxide to 1-fluorobuta-1,3-dienes: the sofa conformations preferred by 6-fluorosultines (6-fluoro-3,6-dihydro-1,2-oxathiin-2-oxides) enjoy enthalpic and conformational Anomeric effects.

The reactivity of (E)- and (Z)-1-fluorobuta-1,3-diene ((E)- and (Z)-11), 2-fluorobutadiene (12), (E)- and (Z)-1-(fluoromethylidene)-2-methylidenecyclohexane ((E)- and (Z)-13) toward SO(2) has been explored and compared with that of (Z)- and (E)-1-(fluoromethylidene)-2-methylidene-3,4-dihydronaphthalene ((Z)-8 and (E)-8). In agreement with quantum calculations, 12 is unreactive toward SO(2) (no cycloaddition, only polymerization), whereas (E)-1-fluoro-1,3-dienes react more rapidly than their (Z)-isomers to give the corresponding 6-fluorosultines following the endo (Alder rule) mode of hetero-Diels-Alder addition. No sulfolene has been observed following the cheletropic mode of addition with the fluorodienes, in contrast to other substituted dienes. In agreement with the calculations, cis-2-fluoro-3,4-oxathiabenzobicyclo[4.4.0]dec-1(6),9-diene-4-oxide (cis-9, the sultine obtained by SO(2) addition to (Z)-8 under conditions of kinetic control) adopts a sofa conformation with the oxygen atom of the ring lying in the average plane of the four carbon atoms of its sultine moiety when it is in the crystalline state at -100 degrees C. A similar sofa conformation was found for its trans-isomer, trans-9, obtained by isomerization of cis-9 or by hetero-Diels-Alder addition of SO(2) to (E)-8. Experiments (equilibrium constant for hetero-Diels-Alder additions, bond lengths, and bond angles in crystalline fluorosultines cis-9 and trans-9) and high-level quantum calculations on cis- and trans-6-fluoro-3,6-dihydro-1,2-oxathiin-2-oxide (cis- and trans-20) confirm the existence of a stabilizing, enthalpic, anomeric (gem-disubstitution by sulfinyloxy and fluoro groups) effect, which is interpreted in terms of (lone pair) n(O1)-->sigma*(C-F) hyperconjugative interactions. This effect is strongest in the sofa conformers with a gauche arrangement of the sigma(O1,S2) and sigma(C6,F) bonds. The calculations suggest also that n(O1)-->sigma*(S2,O2'), pi*(S=O), and n(S2)-->sigma*(O1,C6) interactions intervene and affect the relative stability of the conformers (sofa, boat, pseudo-chair) found for 6-fluorosultines cis- and trans-20.