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Nucleic Acids Res ; 32(Database issue): D196-9, 2004 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-14681393

RESUMEN

Currently, the Genomic Threading Database (GTD) contains structural assignments for the proteins encoded within the genomes of nine eukaryotes and 101 prokaryotes. Structural annotations are carried out using a modified version of GenTHREADER, a reliable fold recognition method. The Gen THREADER annotation jobs are distributed across multiple clusters of processors using grid technology and the predictions are deposited in a relational database accessible via a web interface at http://bioinf.cs.ucl.ac.uk/GTD. Using this system, up to 84% of proteins encoded within a genome can be confidently assigned to known folds with 72% of the residues aligned. On average in the GTD, 64% of proteins encoded within a genome are confidently assigned to known folds and 58% of the residues are aligned to structures.


Asunto(s)
Bases de Datos Genéticas , Genómica , Proteínas/química , Proteínas/genética , Animales , Biología Computacional , Genoma , Humanos , Almacenamiento y Recuperación de la Información , Internet , Pliegue de Proteína , Estructura Terciaria de Proteína , Proteoma/química , Proteoma/genética , Proteómica , Programas Informáticos
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