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1.

Type I interferon transcriptional network regulates expression of coinhibitory receptors in human T cells.

Sumida, Tomokazu S; Dulberg, Shai; Schupp, Jonas C; Lincoln, Matthew R; Stillwell, Helen A; Axisa, Pierre-Paul; Comi, Michela; Unterman, Avraham; Kaminski, Naftali; Madi, Asaf; Kuchroo, Vijay K; Hafler, David A.

Nat Immunol; 23(4): 632-642, 2022 04.

Artículo en Inglés | MEDLINE | ID: mdl-35301508

2.

Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children.

Ramaswamy, Anjali; Brodsky, Nina N; Sumida, Tomokazu S; Comi, Michela; Asashima, Hiromitsu; Hoehn, Kenneth B; Li, Ningshan; Liu, Yunqing; Shah, Aagam; Ravindra, Neal G; Bishai, Jason; Khan, Alamzeb; Lau, William; Sellers, Brian; Bansal, Neha; Guerrerio, Pamela; Unterman, Avraham; Habet, Victoria; Rice, Andrew J; Catanzaro, Jason; Chandnani, Harsha; Lopez, Merrick; Kaminski, Naftali; Dela Cruz, Charles S; Tsang, John S; Wang, Zuoheng; Yan, Xiting; Kleinstein, Steven H; van Dijk, David; Pierce, Richard W; Hafler, David A; Lucas, Carrie L.

Immunity; 54(5): 1083-1095.e7, 2021 05 11.

Artículo en Inglés | MEDLINE | ID: mdl-33891889

3.

Single-Cell Profiling Reveals Immune Aberrations in Progressive Idiopathic Pulmonary Fibrosis.

Unterman, Avraham; Zhao, Amy Y; Neumark, Nir; Schupp, Jonas C; Ahangari, Farida; Cosme, Carlos; Sharma, Prapti; Flint, Jasper; Stein, Yan; Ryu, Changwan; Ishikawa, Genta; Sumida, Tomokazu S; Gomez, Jose L; Herazo-Maya, Jose D; Dela Cruz, Charles S; Herzog, Erica L; Kaminski, Naftali.

Am J Respir Crit Care Med; 2024 May 08.

Artículo en Inglés | MEDLINE | ID: mdl-38717443

4.

Cutting Edge: Distinct B Cell Repertoires Characterize Patients with Mild and Severe COVID-19.

Hoehn, Kenneth B; Ramanathan, Palaniappan; Unterman, Avraham; Sumida, Tomokazu S; Asashima, Hiromitsu; Hafler, David A; Kaminski, Naftali; Dela Cruz, Charles S; Sealfon, Stuart C; Bukreyev, Alexander; Kleinstein, Steven H.

J Immunol; 206(12): 2785-2790, 2021 06 15.

Artículo en Inglés | MEDLINE | ID: mdl-34049971

5.

The regulation and differentiation of regulatory T cells and their dysfunction in autoimmune diseases.

Sumida, Tomokazu S; Cheru, Nardos T; Hafler, David A.

Nat Rev Immunol; 2024 Feb 19.

Artículo en Inglés | MEDLINE | ID: mdl-38374298

6.

Systems Analysis of Immune Changes after B-cell Depletion in Autoimmune Multiple Sclerosis.

Wei, Jessica; Moon, Jeonghyeon; Yasumizu, Yoshiaki; Zhang, Le; Radassi, Khadir; Buitrago-Pocasangre, Nicholas; Deerhake, M Elizabeth; Strauli, Nicholas; Chan, Alan; Herman, Ann; Pedotte, Rosetta; Raposo, Catarina; Tackenberg, Björn; Yim, Isaiah; Pappalardo, Jenna; Longbrake, Erin E; Sumida, Tomokazu S; Axisa, Pierre-Paul; Hafler, David A.

bioRxiv; 2024 Feb 09.

Artículo en Inglés | MEDLINE | ID: mdl-38370778

7.

Hyperosmotic stress response regulates interstitial homeostasis and pathogenic inflammation.

Sumida, Tomokazu S.

J Biochem; 173(3): 159-166, 2023 Mar 07.

Artículo en Inglés | MEDLINE | ID: mdl-36722164

8.

Regulatory T cells in peripheral tissue tolerance and diseases.

Cheru, Nardos; Hafler, David A; Sumida, Tomokazu S.

Front Immunol; 14: 1154575, 2023.

Artículo en Inglés | MEDLINE | ID: mdl-37197653

9.

Latent EBV impairs immune cell signaling and enhances the efficacy of anti-CD3 mAb in Type 1 Diabetes.

Delgado, Ana Lledo; Preston-Hurlburt, Paula; Lim, Noha; Sumida, Tomokazu S; Long, S Alice; McNamara, James; Serti, Elisavet; Higdon, Lauren; Herold, Kevan C.

medRxiv; 2023 Jul 13.

Artículo en Inglés | MEDLINE | ID: mdl-37502867

10.

Single-cell profiling reveals immune aberrations in progressive idiopathic pulmonary fibrosis.

Unterman, Avraham; Zhao, Amy Y; Neumark, Nir; Schupp, Jonas C; Ahangari, Farida; Cosme, Carlos; Sharma, Prapti; Flint, Jasper; Stein, Yan; Ryu, Changwan; Ishikawa, Genta; Sumida, Tomokazu S; Gomez, Jose L; Herazo-Maya, Jose; Dela Cruz, Charles S; Herzog, Erica L; Kaminski, Naftali.

medRxiv; 2023 Apr 29.

Artículo en Inglés | MEDLINE | ID: mdl-37163015

11.

PD-1^highCXCR5^-CD4⁺ peripheral helper T cells promote CXCR3⁺ plasmablasts in human acute viral infection.

Asashima, Hiromitsu; Mohanty, Subhasis; Comi, Michela; Ruff, William E; Hoehn, Kenneth B; Wong, Patrick; Klein, Jon; Lucas, Carolina; Cohen, Inessa; Coffey, Sarah; Lele, Nikhil; Greta, Leissa; Raddassi, Khadir; Chaudhary, Omkar; Unterman, Avraham; Emu, Brinda; Kleinstein, Steven H; Montgomery, Ruth R; Iwasaki, Akiko; Dela Cruz, Charles S; Kaminski, Naftali; Shaw, Albert C; Hafler, David A; Sumida, Tomokazu S.

Cell Rep; 42(1): 111895, 2023 01 31.

Artículo en Inglés | MEDLINE | ID: mdl-36596303

12.

Cytokinopathy with aberrant cytotoxic lymphocytes and profibrotic myeloid response in SARS-CoV-2 mRNA vaccine-associated myocarditis.

Barmada, Anis; Klein, Jon; Ramaswamy, Anjali; Brodsky, Nina N; Jaycox, Jillian R; Sheikha, Hassan; Jones, Kate M; Habet, Victoria; Campbell, Melissa; Sumida, Tomokazu S; Kontorovich, Amy; Bogunovic, Dusan; Oliveira, Carlos R; Steele, Jeremy; Hall, E Kevin; Pena-Hernandez, Mario; Monteiro, Valter; Lucas, Carolina; Ring, Aaron M; Omer, Saad B; Iwasaki, Akiko; Yildirim, Inci; Lucas, Carrie L.

Sci Immunol; 8(83): eadh3455, 2023 05 12.

Artículo en Inglés | MEDLINE | ID: mdl-37146127

13.

Peripheral Blood Single-Cell Sequencing Uncovers Common and Specific Immune Aberrations in Fibrotic Lung Diseases.

Zhao, Amy Y; Unterman, Avraham; Abu Hussein, Nebal; Sharma, Prapti; Flint, Jasper; Yan, Xiting; Adams, Taylor S; Justet, Aurelien; Sumida, Tomokazu S; Zhao, Jiayi; Schupp, Jonas C; Raredon, Micha Sam B; Ahangari, Farida; Zhang, Yingze; Buendia-Roldan, Ivette; Adegunsoye, Ayodeji; Sperling, Anne I; Prasse, Antje; Ryu, Changwan; Herzog, Erica; Selman, Moises; Pardo, Annie; Kaminski, Naftali.

bioRxiv; 2023 Sep 22.

Artículo en Inglés | MEDLINE | ID: mdl-37786685

14.

Population genetics meets single-cell sequencing.

Sumida, Tomokazu S; Hafler, David A.

Science; 376(6589): 134-135, 2022 04 08.

Artículo en Inglés | MEDLINE | ID: mdl-35389792

15.

Identity thieves: T cells steal CD20 from B cells but mark themselves for certain death.

Sumida, Tomokazu S; O'Connor, Kevin C.

Sci Immunol; 7(71): eabq7242, 2022 05 06.

Artículo en Inglés | MEDLINE | ID: mdl-35522724

16.

A multiple sclerosis-protective coding variant reveals an essential role for HDAC7 in regulatory T cells.

Axisa, Pierre-Paul; Yoshida, Tomomi M; Lucca, Liliana E; Kasler, Herbert G; Lincoln, Matthew R; Pham, Giang H; Del Priore, Dante; Carpier, Jean-Marie; Lucas, Carrie L; Verdin, Eric; Sumida, Tomokazu S; Hafler, David A.

Sci Transl Med; 14(675): eabl3651, 2022 12 14.

Artículo en Inglés | MEDLINE | ID: mdl-36516268

17.

Impaired TIGIT expression on B cells drives circulating follicular helper T cell expansion in multiple sclerosis.

Asashima, Hiromitsu; Axisa, Pierre-Paul; Pham, Thi Hong Giang; Longbrake, Erin E; Ruff, William E; Lele, Nikhil; Cohen, Inessa; Raddassi, Khadir; Sumida, Tomokazu S; Hafler, David A.

J Clin Invest; 132(20)2022 10 17.

Artículo en Inglés | MEDLINE | ID: mdl-36250467

18.

Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19.

Unterman, Avraham; Sumida, Tomokazu S; Nouri, Nima; Yan, Xiting; Zhao, Amy Y; Gasque, Victor; Schupp, Jonas C; Asashima, Hiromitsu; Liu, Yunqing; Cosme, Carlos; Deng, Wenxuan; Chen, Ming; Raredon, Micha Sam Brickman; Hoehn, Kenneth B; Wang, Guilin; Wang, Zuoheng; DeIuliis, Giuseppe; Ravindra, Neal G; Li, Ningshan; Castaldi, Christopher; Wong, Patrick; Fournier, John; Bermejo, Santos; Sharma, Lokesh; Casanovas-Massana, Arnau; Vogels, Chantal B F; Wyllie, Anne L; Grubaugh, Nathan D; Melillo, Anthony; Meng, Hailong; Stein, Yan; Minasyan, Maksym; Mohanty, Subhasis; Ruff, William E; Cohen, Inessa; Raddassi, Khadir; Niklason, Laura E; Ko, Albert I; Montgomery, Ruth R; Farhadian, Shelli F; Iwasaki, Akiko; Shaw, Albert C; van Dijk, David; Zhao, Hongyu; Kleinstein, Steven H; Hafler, David A; Kaminski, Naftali; Dela Cruz, Charles S.

Nat Commun; 13(1): 440, 2022 01 21.

Artículo en Inglés | MEDLINE | ID: mdl-35064122

19.

NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data.

He, Liang; Davila-Velderrain, Jose; Sumida, Tomokazu S; Hafler, David A; Kellis, Manolis; Kulminski, Alexander M.

Commun Biol; 4(1): 629, 2021 05 26.

Artículo en Inglés | MEDLINE | ID: mdl-34040149

20.

Post-infectious inflammatory disease in MIS-C features elevated cytotoxicity signatures and autoreactivity that correlates with severity.

Ramaswamy, Anjali; Brodsky, Nina N; Sumida, Tomokazu S; Comi, Michela; Asashima, Hiromitsu; Hoehn, Kenneth B; Li, Ningshan; Liu, Yunqing; Shah, Aagam; Ravindra, Neal G; Bishai, Jason; Khan, Alamzeb; Lau, William; Sellers, Brian; Bansal, Neha; Guerrerio, Pamela; Unterman, Avraham; Habet, Victoria; Rice, Andrew J; Catanzaro, Jason; Chandnani, Harsha; Lopez, Merrick; Kaminski, Naftali; Dela Cruz, Charles S; Tsang, John S; Wang, Zuoheng; Yan, Xiting; Kleinstein, Steven H; van Dijk, David; Pierce, Richard W; Hafler, David A; Lucas, Carrie L.

medRxiv; 2021 Apr 03.

Artículo en Inglés | MEDLINE | ID: mdl-33300011

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