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1.
Nature ; 584(7819): 109-114, 2020 08.
Artículo en Inglés | MEDLINE | ID: mdl-32669710

RESUMEN

The size of plants is largely determined by growth of the stem. Stem elongation is stimulated by gibberellic acid1-3. Here we show that internode stem elongation in rice is regulated antagonistically by an 'accelerator' and a 'decelerator' in concert with gibberellic acid. Expression of a gene we name ACCELERATOR OF INTERNODE ELONGATION 1 (ACE1), which encodes a protein of unknown function, confers cells of the intercalary meristematic region with the competence for cell division, leading to internode elongation in the presence of gibberellic acid. By contrast, upregulation of DECELERATOR OF INTERNODE ELONGATION 1 (DEC1), which encodes a zinc-finger transcription factor, suppresses internode elongation, whereas downregulation of DEC1 allows internode elongation. We also show that the mechanism of internode elongation that is mediated by ACE1 and DEC1 is conserved in the Gramineae family. Furthermore, an analysis of genetic diversity suggests that mutations in ACE1 and DEC1 have historically contributed to the selection of shorter plants in domesticated populations of rice to increase their resistance to lodging, and of taller plants in wild species of rice for adaptation to growth in deep water. Our identification of these antagonistic regulatory factors enhances our understanding of the gibberellic acid response as an additional mechanism that regulates internode elongation and environmental fitness, beyond biosynthesis and gibberellic acid signal transduction.


Asunto(s)
Giberelinas/metabolismo , Oryza/crecimiento & desarrollo , Oryza/metabolismo , Tallos de la Planta/crecimiento & desarrollo , Tallos de la Planta/metabolismo , Aclimatación , Mutación , Oryza/genética , Reguladores del Crecimiento de las Plantas/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Tallos de la Planta/genética , Sitios de Carácter Cuantitativo , Transducción de Señal
2.
Plant J ; 115(1): 175-189, 2023 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-36994645

RESUMEN

In plants, variations in seed size and number are outcomes of different reproductive strategies. Both traits are often environmentally influenced, suggesting that a mechanism exists to coordinate these phenotypes in response to available maternal resources. Yet, how maternal resources are sensed and influence seed size and number is largely unknown. Here, we report a mechanism that senses maternal resources and coordinates grain size and number in the wild rice Oryza rufipogon, a wild progenitor of Asian cultivated rice. We showed that FT-like 9 (FTL9) regulates both grain size and number and that maternal photosynthetic assimilates induce FTL9 expression in leaves to act as a long-range signal that increases grain number and reduces size. Our findings highlight a strategy that benefits wild plants to survive in a fluctuating environment. In this strategy, when maternal resources are sufficient, wild plants increase their offspring number while preventing an increase in offspring size by the action of FTL9, which helps expand their habitats. In addition, we found that a loss-of-function allele (ftl9) is prevalent among wild and cultivated populations, offering a new scenario in the history of rice domestication.


Asunto(s)
Grano Comestible , Oryza , Grano Comestible/genética , Grano Comestible/metabolismo , Semillas/genética , Fenotipo , Hojas de la Planta/genética , Domesticación , Oryza/genética , Oryza/metabolismo
3.
Plant J ; 114(4): 729-742, 2023 05.
Artículo en Inglés | MEDLINE | ID: mdl-36974032

RESUMEN

Improving crop yield potential through an enhanced response to rising atmospheric CO2 levels is an effective strategy for sustainable crop production in the face of climate change. Large-sized panicles (containing many spikelets per panicle) have been a recent ideal plant architecture (IPA) for high-yield rice breeding. However, few breeding programs have proposed an IPA under the projected climate change. Here, we demonstrate through the cloning of the rice (Oryza sativa) quantitative trait locus for MORE PANICLES 3 (MP3) that the improvement in panicle number increases grain yield at elevated atmospheric CO2 levels. MP3 is a natural allele of OsTB1/FC1, previously reported as a negative regulator of tiller bud outgrowth. The temperate japonica allele advanced the developmental process in axillary buds, moderately promoted tillering, and increased the panicle number without negative effects on the panicle size or culm thickness in a high-yielding indica cultivar with large-sized panicles. The MP3 allele, containing three exonic polymorphisms, was observed in most accessions in the temperate japonica subgroups but was rarely observed in the indica subgroup. No selective sweep at MP3 in either the temperate japonica or indica subgroups suggested that MP3 has not been involved and utilized in artificial selection during domestication or breeding. A free-air CO2 enrichment experiment revealed a clear increase of grain yield associated with the temperate japonica allele at elevated atmospheric CO2 levels. Our findings show that the moderately increased panicle number combined with large-sized panicles using MP3 could be a novel IPA and contribute to an increase in rice production under climate change with rising atmospheric CO2 levels.


Asunto(s)
Oryza , Dióxido de Carbono , Alelos , Fitomejoramiento , Grano Comestible/genética
4.
Plant Cell Physiol ; 65(3): 322-337, 2024 Apr 16.
Artículo en Inglés | MEDLINE | ID: mdl-38179836

RESUMEN

Plants undergo a series of developmental phases throughout their life-cycle, each characterized by specific processes. Three critical features distinguish these phases: the arrangement of primordia (phyllotaxis), the timing of their differentiation (plastochron) and the characteristics of the lateral organs and axillary meristems. Identifying the unique molecular features of each phase, determining the molecular triggers that cause transitions and understanding the molecular mechanisms underlying these transitions are keys to gleaning a complete understanding of plant development. During the vegetative phase, the shoot apical meristem (SAM) facilitates continuous leaf and stem formation, with leaf development as the hallmark. The transition to the reproductive phase induces significant changes in these processes, driven mainly by the protein FT (FLOWERING LOCUS T) in Arabidopsis and proteins encoded by FT orthologs, which are specified as 'florigen'. These proteins are synthesized in leaves and transported to the SAM, and act as the primary flowering signal, although its impact varies among species. Within the SAM, florigen integrates with other signals, culminating in developmental changes. This review explores the central question of how florigen induces developmental phase transition in the SAM. Future research may combine phase transition studies, potentially revealing the florigen-induced developmental phase transition in the SAM.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis , Florigena/metabolismo , Meristema/metabolismo , Flores/metabolismo , Hojas de la Planta/metabolismo , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Regulación de la Expresión Génica de las Plantas
5.
Plant J ; 112(6): 1337-1349, 2022 12.
Artículo en Inglés | MEDLINE | ID: mdl-36288411

RESUMEN

Structure-based high-throughput screening of chemical compounds that target protein-protein interactions (PPIs) is a promising technology for gaining insight into how plant development is regulated, leading to many potential agricultural applications. At present, there are no examples of using high-throughput screening to identify chemicals that target plant transcriptional complexes, some of which are responsible for regulating multiple physiological functions. Florigen, a protein encoded by FLOWERING LOCUS T (FT), was initially identified as a molecule that promotes flowering and has since been shown to regulate flowering and other developmental phenomena such as tuber formation in potato (Solanum tuberosum). FT functions as a component of the florigen activation complex (FAC) with a 14-3-3 scaffold protein and FD, a bZIP transcription factor that activates downstream gene expression. Although 14-3-3 is an important component of FAC, little is known about the function of the 14-3-3 protein itself. Here, we report the results of a high-throughput in vitro fluorescence resonance energy transfer (FRET) screening of chemical libraries that enabled us to identify small molecules capable of inhibiting FAC formation. These molecules abrogate the in vitro interaction between the 14-3-3 protein and the OsFD1 peptide, a rice (Oryza sativa) FD, by directly binding to the 14-3-3 protein. Treatment with S4, a specific hit molecule, strongly inhibited FAC activity and flowering in duckweed, tuber formation in potato, and branching in rice in a dose-dependent manner. Our results demonstrate that the high-throughput screening approach based on the three-dimensional structure of PPIs is suitable in plants. In this study, we have proposed good candidate compounds for future modification to obtain inhibitors of florigen-dependent processes through inhibition of FAC formation.


Asunto(s)
Florigena , Oryza , Florigena/metabolismo , Proteínas de Plantas/metabolismo , Proteínas 14-3-3/genética , Proteínas 14-3-3/metabolismo , Ensayos Analíticos de Alto Rendimiento , Oryza/metabolismo , Regulación de la Expresión Génica de las Plantas , Flores/genética
6.
Opt Express ; 31(13): 21351-21366, 2023 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-37381236

RESUMEN

This paper describes experimental analysis of atmospheric channel model of Geostationary Earth Orbit (GEO) satellite-to-ground optical link by utilizing the Laser Utilizing Communication Systems (LUCAS) onboard the optical data relay GEO satellite. Our research work examines the effect of misalignment fading and various atmospheric turbulence conditions. These analytical results clarify that atmospheric channel model is well fitted to theoretical distributions with misalignment fading under various turbulence regimes. We also evaluate several atmospheric channel characteristics, including coherence time, power spectral density and probability of fade, in various turbulence conditions.

7.
Opt Express ; 31(5): 9081-9097, 2023 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-36860008

RESUMEN

Free-space optical (FSO) systems are compulsory to realize high capacity and interference-free communication links from low-Earth orbit (LEO) satellite constellations as well as spacecraft and space stations to the Earth. To be integrated with high-capacity ground networks, the collected portion of the incident beam should be coupled into an optical fiber. To accurately evaluate the signal-to-noise ratio (SNR) and bit-error rate (BER) performance metrics, the probability density function (PDF) of fiber coupling efficiency (CE) must be determined. Previous studies have experimentally verified the CE PDF for a single-mode fiber, however, there is no such investigation for the CE PDF of a multi-mode fiber (MMF) in a LEO-to-ground FSO downlink. In this paper, for the first time, the CE PDF for a 200-µm MMF is experimentally investigated using data from an FSO downlink from the Small Optical Link for International Space Station (SOLISS) terminal to a 40-cm sub-aperture optical ground station (OGS) supported by a fine-tracking system. An average CE of 5.45 dB was also achieved given that the alignment between SOLISS and OGS was not optimal. In addition, using the angle-of-arrival (AoA) and received power data, the statistical characteristics such as channel coherence time, power spectral density, spectrogram, and PDFs of AoA, beam misalignments, and atmospheric turbulence-induced fluctuations are revealed and compared with the state-of-the-art theoretical background.

8.
Biosci Biotechnol Biochem ; 87(10): 1145-1154, 2023 Sep 21.
Artículo en Inglés | MEDLINE | ID: mdl-37385821

RESUMEN

Auxin regulation of primary root growth in Arabidopsis and rice was compared by analyzing root growth in response to changes in auxin levels. A bell-shaped root-growth curve was identified in both Arabidopsis and rice in response to change in auxin levels. In Arabidopsis, cell division was the main regulator of root growth in response to auxin; in rice, auxin promoted root growth by regulating cell division and cell length. The expression levels of PLETHORA (PLT) genes in response to change in auxin level followed a bell-shaped curve and closely correlated with cell division in Arabidopsis but not in rice, implying that PLT gene expression plays key role to control root growth in Arabidopsis. The level of auxin in Arabidopsis was optimal for primary root elongation, while in rice it was higher than optimal. These differences may explain the species-dependent development of root systems.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis , Oryza , Ácidos Indolacéticos/farmacología , Ácidos Indolacéticos/metabolismo , Proteínas de Arabidopsis/genética , Oryza/genética , Oryza/metabolismo , Raíces de Plantas/metabolismo , Regulación de la Expresión Génica de las Plantas
9.
Plant J ; 108(4): 1097-1115, 2021 11.
Artículo en Inglés | MEDLINE | ID: mdl-34538012

RESUMEN

Reactive oxygen species (ROS) play essential roles in plant development and environmental stress responses. In this study, ROS dynamics, the glutathione redox status, the expression and subcellular localization of glutathione peroxidases (GPXs), and the effects of inhibitors of ROS-mediated metabolism were investigated along with fertilization and early zygotic embryogenesis in rice (Oryza sativa). Zygotes and early embryos exhibited developmental arrest upon inhibition of ROS production. Egg cells accumulated high ROS levels, and, after fertilization, intracellular ROS levels progressively declined in zygotes in which de novo expression of GPX1 and 3 was observed through upregulation of the genes. In addition to inhibition of GPX activity, depletion of glutathione impeded early embryonic development and led to failure of the zygote to appropriately decrease H2 O2 levels. Moreover, through monitoring of the glutathione redox status, the developing zygotes exhibited a progressive glutathione oxidation, which became extremely delayed under inhibited GPX activity. Our results provide insights into the importance of ROS dynamics, GPX antioxidant activity, and glutathione redox metabolism during zygotic/embryonic development.


Asunto(s)
Antioxidantes/metabolismo , Glutatión Peroxidasa/metabolismo , Glutatión/metabolismo , Oryza/fisiología , Especies Reactivas de Oxígeno/metabolismo , Glutatión Peroxidasa/genética , Oryza/enzimología , Oryza/genética , Oryza/crecimiento & desarrollo , Oxidación-Reducción , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Estrés Fisiológico , Cigoto
10.
Plant Mol Biol ; 109(3): 233-248, 2022 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-32902791

RESUMEN

KEY MESSAGE: The field survey in this article showed in 'KU50', a popular variety and late-branching type of cassava in Southeast Asia, that flowering rarely occurs in normal-field conditions in Southeast Asia but is strongly induced in the dry season in the mountainous region. Flowering time is correlated with the expression patterns of MeFT1 and homologs of Arabidopsis GI, PHYA, and NF-Ys. Cassava (Manihot esculenta Crantz) is a tropical crop that is propagated vegetatively rather than sexually by seed. Flowering rarely occurs in the erect-type variety grown in Southeast Asia, but it is known that cassava produces flowers every year in mountainous regions. Data pertaining to the effect of environmental factors on flowering time and gene expression in cassava, however, is limited. The aim of the present study was to determine the kinds of environmental conditions that regulate flowering time in cassava and the underlying molecular mechanisms. The flowering status of KU50, a popular variety in Southeast Asia and late-branching type of cassava, was monitored in six fields in Vietnam and Cambodia. At non-flowering and flowering field locations in North Vietnam, the two FLOWERING LOCUS T (FT)-like genes, MeFT1 and MeFT2, were characterized by qPCR, and the pattern of expression of flowering-related genes and genes responsive to environmental signals were analyzed by using RNA sequencing data from time-series samples. Results indicate that cassava flowering was induced in the dry season in the mountain region, and that flowering time was correlated with the expression of MeFT1, and homologs of Arabidopsis GI, PHYA, and NF-Ys. Based upon these data, we hypothesize that floral induction in cassava is triggered by some conditions present in the mountain regions during the dry season.


Asunto(s)
Arabidopsis , Manihot , Arabidopsis/genética , Arabidopsis/metabolismo , Asia Sudoriental , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Manihot/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
11.
Cancer Sci ; 113(5): 1613-1624, 2022 May.
Artículo en Inglés | MEDLINE | ID: mdl-35247012

RESUMEN

To examine effects of PP6 gene (Ppp6c) deficiency on pancreatic tumor development, we developed pancreas-specific, tamoxifen-inducible Cre-mediated KP (KRAS(G12D) plus Trp53-deficient) mice (cKP mice) and crossed them with Ppp6cflox / flox mice. cKP mice with the homozygous Ppp6c deletion developed pancreatic tumors, became emaciated and required euthanasia within 150 days of mutation induction, phenotypes that were not seen in heterozygous or wild-type (WT) mice. At 30 days, a comparative analysis of genes commonly altered in homozygous versus WT Ppp6c cKP mice revealed enhanced activation of Erk and NFκB pathways in homozygotes. By 80 days, the number and size of tumors and number of precancerous lesions had significantly increased in the pancreas of Ppp6c homozygous relative to heterozygous or WT cKP mice. Ppp6c-/- tumors were pathologically diagnosed as pancreatic ductal adenocarcinoma (PDAC) undergoing the epithelial-mesenchymal transition (EMT), and cancer cells had invaded surrounding tissues in three out of six cases. Transcriptome and metabolome analyses indicated an enhanced cancer-specific glycolytic metabolism in Ppp6c-deficient cKP mice and the increased expression of inflammatory cytokines. Individual Ppp6c-/- cKP mice showed weight loss, decreased skeletal muscle and adipose tissue, and increased circulating tumor necrosis factor (TNF)-α and IL-6 levels, suggestive of systemic inflammation. Overall, Ppp6c deficiency in the presence of K-ras mutations and Trp53 gene deficiency promoted pancreatic tumorigenesis with generalized cachexia and early death. This study provided the first evidence that Ppp6c suppresses mouse pancreatic carcinogenesis and supports the use of Ppp6c-deficient cKP mice as a model for developing treatments for cachexia associated with pancreatic cancer.


Asunto(s)
Carcinoma Ductal Pancreático , Neoplasias Pancreáticas , Fosfoproteínas Fosfatasas/metabolismo , Animales , Caquexia/genética , Carcinogénesis/genética , Carcinoma Ductal Pancreático/patología , Humanos , Ratones , Mutación , Neoplasias Pancreáticas/patología , Proteínas Proto-Oncogénicas p21(ras)/genética , Proteínas Proto-Oncogénicas p21(ras)/metabolismo , Neoplasias Pancreáticas
12.
Plant Mol Biol ; 106(3): 285-296, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-33855676

RESUMEN

KEY MESSAGE: We characterized genes that function in the photoperiodic flowering pathway in cassava. Transcriptome analysis of field-grown plants revealed characteristic expression patterns of these genes, demonstrating that field-grown cassava experiences two distinct developmental transitions. Cassava is an important crop for both edible and industrial purposes. Cassava develops storage roots that accumulate starch, providing an important source of staple food in tropical regions. To facilitate cassava breeding, it is important to elucidate how flowering is controlled. Several important genes that control flowering time have been identified in model plants; however, comprehensive characterization of these genes in cassava is still lacking. In this study, we identified genes encoding central flowering time regulators and examined these sequences for the presence or absence of conserved motifs. We found that cassava shares conserved genes for the photoperiodic flowering pathway, including florigen, anti-florigen and its associated transcription factor (GIGANTEA, CONSTANS, FLOWERING LOCUS T, CENTRORADIALIS/TERMINAL FLOWER1 and FD) and florigen downstream genes (SUPRESSOR OF OVEREXPRESSION OF CONSTANS1 and APETALA1/FRUITFUL). We conducted RNA-seq analysis of field-grown cassava plants and characterized the expression of flowering control genes. Finally, from the transcriptome analysis we identified two distinct developmental transitions that occur in field-grown cassava.


Asunto(s)
Flores/crecimiento & desarrollo , Flores/metabolismo , Regulación del Desarrollo de la Expresión Génica/genética , Regulación de la Expresión Génica de las Plantas/genética , Manihot/metabolismo , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Colombia , Florigena/antagonistas & inhibidores , Florigena/metabolismo , Flores/genética , Perfilación de la Expresión Génica , Manihot/genética , Manihot/crecimiento & desarrollo , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Alineación de Secuencia
13.
Cancer Sci ; 112(6): 2233-2244, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-33743547

RESUMEN

According to TCGA database, mutations in PPP6C (encoding phosphatase PP6) are found in c. 10% of tumors from melanoma patients, in which they coexist with BRAF and NRAS mutations. To assess PP6 function in melanoma carcinogenesis, we generated mice in which we could specifically induce BRAF(V600E) expression and delete Ppp6c in melanocytes. In these mice, melanoma susceptibility following UVB irradiation exhibited the following pattern: Ppp6c semi-deficient (heterozygous) > Ppp6c wild-type > Ppp6c-deficient (homozygous) tumor types. Next-generation sequencing of Ppp6c heterozygous and wild-type melanoma tumors revealed that all harbored Trp53 mutations. However, Ppp6c heterozygous tumors showed a higher Signature 1 (mitotic/mitotic clock) mutation index compared with Ppp6c wild-type tumors, suggesting increased cell division. Analysis of cell lines derived from either Ppp6c heterozygous or wild-type melanoma tissues showed that both formed tumors in nude mice, but Ppp6c heterozygous tumors grew faster compared with those from the wild-type line. Ppp6c knockdown via siRNA in the Ppp6c heterozygous line promoted the accumulation of genomic damage and enhanced apoptosis relative to siRNA controls. We conclude that in the presence of BRAF(V600E) expression and UV-induced Trp53 mutation, Ppp6c haploinsufficiency promotes tumorigenesis.


Asunto(s)
Carcinogénesis/genética , Melanoma/genética , Fosfoproteínas Fosfatasas/genética , Proteínas Proto-Oncogénicas B-raf/genética , Rayos Ultravioleta/efectos adversos , Animales , Carcinogénesis/patología , Carcinogénesis/efectos de la radiación , Exoma/genética , Exoma/efectos de la radiación , Genotipo , Haploinsuficiencia , Humanos , Melanocitos/metabolismo , Melanocitos/patología , Melanocitos/efectos de la radiación , Melanoma/patología , Ratones , Ratones Desnudos , Ratones Transgénicos , Mutación/efectos de la radiación , Células Tumorales Cultivadas , Proteína p53 Supresora de Tumor/genética
14.
Plant Cell Physiol ; 62(1): 8-27, 2021 Mar 25.
Artículo en Inglés | MEDLINE | ID: mdl-33244607

RESUMEN

Bread wheat is a major crop that has long been the focus of basic and breeding research. Assembly of its genome has been difficult because of its large size and allohexaploid nature (AABBDD genome). Following the first reported assembly of the genome of the experimental strain Chinese Spring (CS), the 10+ Wheat Genomes Project was launched to produce multiple assemblies of worldwide modern cultivars. The only Asian cultivar in the project is Norin 61, a representative Japanese cultivar adapted to grow across a broad latitudinal range, mostly characterized by a wet climate and a short growing season. Here, we characterize the key aspects of its chromosome-scale genome assembly spanning 15 Gb with a raw scaffold N50 of 22 Mb. Analysis of the repetitive elements identified chromosomal regions unique to Norin 61 that encompass a tandem array of the pathogenesis-related 13 family. We report novel copy-number variations in the B homeolog of the florigen gene FT1/VRN3, pseudogenization of its D homeolog and the association of its A homeologous alleles with the spring/winter growth habit. Furthermore, the Norin 61 genome carries typical East Asian functional variants different from CS, ranging from a single nucleotide to multi-Mb scale. Examples of such variation are the Fhb1 locus, which confers Fusarium head-blight resistance, Ppd-D1a, which confers early flowering, Glu-D1f for Asian noodle quality and Rht-D1b, which introduced semi-dwarfism during the green revolution. The adoption of Norin 61 as a reference assembly for functional and evolutionary studies will enable comprehensive characterization of the underexploited Asian bread wheat diversity.


Asunto(s)
Resistencia a la Enfermedad/genética , Flores/crecimiento & desarrollo , Genes de Plantas/genética , Genoma de Planta/genética , Triticum/genética , Mapeo Cromosómico , Cromosomas de las Plantas/genética , Citogenética , Asia Oriental , Flores/genética , Fusarium , Genes de Plantas/fisiología , Estudios de Asociación Genética , Variación Genética/genética , Variación Genética/fisiología , Genoma de Planta/fisiología , Genotipo , Filogenia , Alineación de Secuencia , Análisis de Secuencia de ADN , Triticum/crecimiento & desarrollo , Triticum/inmunología , Triticum/fisiología
15.
Int J Mol Sci ; 23(1)2021 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-35008463

RESUMEN

The three-dimensional (3D) arrangement of cells in tissues provides an anatomical basis for analyzing physiological and biochemical aspects of plant and animal cellular development and function. In this study, we established a protocol for tissue clearing and 3D imaging in rice. Our protocol is based on three improvements: clearing with iTOMEI (clearing solution suitable for plants), developing microscopic conditions in which the Z step is optimized for 3D reconstruction, and optimizing cell-wall staining. Our protocol successfully 3D imaged rice shoot apical meristems, florets, and root apical meristems at cellular resolution throughout whole tissues. Using fluorescent reporters of auxin signaling in rice root tips, we also revealed the 3D distribution of auxin signaling events that are activated in the columella, quiescent center, and multiple rows of cells in the stele of the root apical meristem. Examination of cells with higher levels of auxin signaling revealed that only the central row of cells was connected to the quiescent center. Our method provides opportunities to observe the 3D arrangement of cells in rice tissues.


Asunto(s)
Oryza/fisiología , Pared Celular/metabolismo , Pared Celular/fisiología , Imagenología Tridimensional/métodos , Ácidos Indolacéticos/metabolismo , Meristema/metabolismo , Meristema/fisiología , Oryza/metabolismo , Raíces de Plantas/metabolismo , Raíces de Plantas/fisiología , Brotes de la Planta/metabolismo , Brotes de la Planta/fisiología , Plantas/metabolismo , Transducción de Señal/fisiología
16.
Plant Cell Physiol ; 61(8): 1438-1448, 2020 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-32294217

RESUMEN

Agronomically important traits often develop during the later stages of crop growth as consequences of various plant-environment interactions. Therefore, the temporal physiological states that change and accumulate during the crop's life course can significantly affect the eventual phenotypic differences in agronomic traits among crop varieties. Thus, to improve productivity, it is important to elucidate the associations between temporal physiological responses during the growth of different crop varieties and their agronomic traits. However, data representing the dynamics and diversity of physiological states in plants grown under field conditions are sparse. In this study, we quantified the endogenous levels of five phytohormones - auxin, cytokinins (CKs), ABA, jasmonate and salicylic acid - in the leaves of eight diverse barley (Hordeum vulgare) accessions grown under field conditions sampled weekly over their life course to assess the ongoing fluctuations in hormone levels in the different accessions under field growth conditions. Notably, we observed enormous changes over time in the development-related plant hormones, such as auxin and CKs. Using 3' RNA-seq-based transcriptome data from the same samples, we investigated the expression of barley genes orthologous to known hormone-related genes of Arabidopsis throughout the life course. These data illustrated the dynamics and diversity of the physiological states of these field-grown barley accessions. Together, our findings provide new insights into plant-environment interactions, highlighting that there is cultivar diversity in physiological responses during growth under field conditions.


Asunto(s)
Hordeum/fisiología , Reguladores del Crecimiento de las Plantas/fisiología , Ácido Abscísico/análisis , Ciclopentanos/análisis , Citocininas/análisis , Citocininas/fisiología , Hordeum/química , Hordeum/crecimiento & desarrollo , Ácidos Indolacéticos/análisis , Oxilipinas/análisis , Reguladores del Crecimiento de las Plantas/análisis , Ácido Salicílico/análisis
17.
Physiol Plant ; 169(2): 214-227, 2020 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-31925781

RESUMEN

Lateral roots (LRs) determine the overall root system architecture, thus enabling plants to efficiently explore their underground environment for water and nutrients. However, the mechanisms regulating LR development are poorly understood in monocotyledonous plants. We characterized a rice mutant, wavy root elongation growth 1 (weg1), that produced higher number of long and thick LRs (L-type LRs) formed from the curvatures of its wavy parental roots caused by asymmetric cell growth in the elongation zone. Consistent with this phenotype, was the expression of the WEG1 gene, which encodes a putative member of the hydroxyproline-rich glycoprotein family that regulates cell wall extensibility, in the root elongation zone. The asymmetric elongation growth in roots is well known to be regulated by auxin, but we found that the distribution of auxin at the apical region of the mutant and the wild-type roots was symmetric suggesting that the wavy root phenotype in rice is independent of auxin. However, the accumulation of auxin at the convex side of the curvatures, the site of L-type LR formation, suggested that auxin likely induced the formation of L-type LRs. This was supported by the need of a high amount of exogenous auxin to induce the formation of L-type LRs. These results suggest that the MNU-induced weg1 mutated gene regulates the auxin-independent parental root elongation that controls the number of likely auxin-induced L-type LRs, thus reflecting its importance in improving rice root architecture.


Asunto(s)
Glicoproteínas/genética , Oryza/crecimiento & desarrollo , Proteínas de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo , Pared Celular , Regulación de la Expresión Génica de las Plantas , Hidroxiprolina , Ácidos Indolacéticos , Oryza/genética
18.
Int J Mol Sci ; 20(5)2019 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-30818769

RESUMEN

(1) Background: Silene latifolia is a dioecious plant, whose sex is determined by XY-type sex chromosomes. Microbotryum lychnidis-dioicae is a smut fungus that infects S. latifolia plants and causes masculinization in female flowers, as if Microbotryum were acting as a sex-determining gene. Recent large-scale sequencing efforts have promised to provide candidate genes that are involved in the sex determination machinery in plants. These candidate genes are to be analyzed for functional characterization. A virus vector can be a tool for functional gene analyses; (2) Methods: To develop a viral vector system in S. latifolia plants, we selected Apple latent spherical virus (ALSV) as an appropriate virus vector that has a wide host range; (3) Results: Following the optimization of the ALSV inoculation method, S. latifolia plants were infected with ALSV at high rates in the upper leaves. In situ hybridization analysis revealed that ALSV can migrate into the flower meristems in S. latifolia plants. Successful VIGS (virus-induced gene silencing) in S. latifolia plants was demonstrated with knockdown of the phytoene desaturase gene. Finally, the developed method was applied to floral organ genes to evaluate its usability in flowers; (4) Conclusion: The developed system enables functional gene analyses in S. latifolia plants, which can unveil gene functions and networks of S. latifolia plants, such as the mechanisms of sex determination and fungal-induced masculinization.


Asunto(s)
Silenciador del Gen , Secoviridae/fisiología , Silene/genética , Regulación hacia Abajo/genética , Flores/virología , Regulación de la Expresión Génica de las Plantas , Técnicas de Silenciamiento del Gen , Genes de Plantas , Fenotipo , Enfermedades de las Plantas/virología , Reproducibilidad de los Resultados
19.
Plant Cell Physiol ; 59(3): 458-468, 2018 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-29401229

RESUMEN

Hd3a, a rice homolog of FLOWERING LOCUS T (FT), is a florigen that induces flowering. Hd3a forms a ternary 'florigen activation complex' (FAC) with 14-3-3 protein and OsFD1 transcription factor, a rice homolog of FD that induces transcription of OsMADS15, a rice homolog of APETALA1 (AP1), which leads to flowering. TERMINAL FLOWER 1 (TFL1) represses flowering and controls inflorescence architecture. However, the molecular basis for floral repression by TFL1 remains poorly understood. Here we show that RICE CENTRORADIALIS (RCN), rice TFL1-like proteins, compete with Hd3a for 14-3-3 binding. All four RCN genes are predominantly expressed in the vasculature, and RCN proteins are transported to the shoot apex to antagonize florigen activity and regulate inflorescence development. The antagonistic function of RCN to Hd3a is dependent on its 14-3-3 binding activity. Our results suggest a molecular basis for regulation of the balance between florigen FT and anti-florigen TFL1.


Asunto(s)
Proteínas 14-3-3/metabolismo , Inflorescencia/crecimiento & desarrollo , Inflorescencia/metabolismo , Oryza/crecimiento & desarrollo , Oryza/metabolismo , Proteínas de Plantas/metabolismo , Florigena/farmacología , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Genes de Plantas , Inflorescencia/efectos de los fármacos , Meristema/efectos de los fármacos , Meristema/metabolismo , Modelos Biológicos , Especificidad de Órganos/genética , Oryza/efectos de los fármacos , Oryza/genética , Proteínas de Plantas/genética , Plantas Modificadas Genéticamente , Unión Proteica/efectos de los fármacos
20.
AJR Am J Roentgenol ; 211(5): 1106-1111, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-30240295

RESUMEN

OBJECTIVE: The purpose of this study was to investigate the diagnostic performance of adaptive 4D volume perfusion CT covering the entire neck for detecting metastatic nodes in patients with head and neck squamous cell carcinoma. SUBJECTS AND METHODS: Thirty patients with histologically confirmed disease were enrolled. The relation between perfusion parameters and nodal size was analyzed, and perfusion parameters were compared between metastatic and benign nodes. The diagnostic capability for detecting metastatic nodes was evaluated. RESULTS: Significant inverse correlations with nodal size were found for blood flow (r = -0.40, p = 0.002), blood volume (r = -0.32, p = 0.02), and permeability surface product (r = -0.27, p = 0.04) of the metastatic nodes. All three parameters had significantly higher values in association with nodal maximum diameter < 10 mm compared with diameter ≥ 10 mm (blood flow, p = 0.004; blood volume, p = 0.01; permeability surface product, p = 0.02). Among the nodes with maximum diameter < 10 mm, blood flow of the metastatic nodes was significantly higher than that of the benign nodes (p = 0.02), whereas among the nodes ≥ 10 mm in diameter, the mean transit time of the metastatic nodes was significantly lower than that of the benign nodes (p = 0.04). In multivariate analysis, blood flow in nodes with maximum diameter < 10 mm had a significant association with the detection of metastatic nodes. The sensitivity and specificity of blood flow for differentiating metastatic from benign nodes were 73.3% and 70.8%. CONCLUSION: Findings from 4D volume perfusion CT covering the entire neck may be informative for characterization of cervical nodes. It is worthwhile to include the examination in nodal staging of head and neck squamous cell carcinoma.


Asunto(s)
Tomografía Computarizada Cuatridimensional , Ganglios Linfáticos/irrigación sanguínea , Ganglios Linfáticos/patología , Metástasis Linfática/diagnóstico por imagen , Metástasis Linfática/patología , Cuello/diagnóstico por imagen , Carcinoma de Células Escamosas de Cabeza y Cuello/patología , Anciano , Medios de Contraste , Femenino , Humanos , Yohexol/análogos & derivados , Masculino , Persona de Mediana Edad , Dosis de Radiación , Interpretación de Imagen Radiográfica Asistida por Computador , Flujo Sanguíneo Regional , Sensibilidad y Especificidad
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